EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000004752 (Gene tree)
Gene ID: -
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 13290 bases
Position: chrLZNR01020461.1:20146-33435
Accession: 6916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000005336	MBD	PF01429.19	3e-16	1	1
ENSUAMP00000005332	MBD	PF01429.19	3.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000006060	MBD1-202	1950	-	ENSUAMP00000005336	584 (aa)	-	-
ENSUAMT00000006056	MBD1-201	2058	-	ENSUAMP00000005332	620 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000004752's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000004752's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000004752	MBD1	100	83.993	ENSG00000141644	MBD1	93	91.901	Homo_sapiens
ENSUAMG00000004752	MBD1	97	95.032	ENSAMEG00000000238	MBD1	95	95.032	Ailuropoda_melanoleuca
ENSUAMG00000004752	MBD1	67	30.735	ENSATEG00000009608	mbd1b	52	30.562	Anabas_testudineus
ENSUAMG00000004752	MBD1	62	43.659	ENSACAG00000006091	-	100	42.683	Anolis_carolinensis
ENSUAMG00000004752	MBD1	98	82.799	ENSANAG00000036253	MBD1	99	81.541	Aotus_nancymaae
ENSUAMG00000004752	MBD1	58	34.302	ENSACLG00000021383	mbd1b	50	33.831	Astatotilapia_calliptera
ENSUAMG00000004752	MBD1	96	89.112	ENSBTAG00000003801	MBD1	100	83.361	Bos_taurus
ENSUAMG00000004752	MBD1	98	83.305	ENSCJAG00000004959	MBD1	99	80.787	Callithrix_jacchus
ENSUAMG00000004752	MBD1	97	89.280	ENSCAFG00000018928	MBD1	95	89.246	Canis_familiaris
ENSUAMG00000004752	MBD1	100	91.757	ENSCAFG00020024272	MBD1	100	90.031	Canis_lupus_dingo
ENSUAMG00000004752	MBD1	100	82.838	ENSCHIG00000021134	MBD1	100	84.653	Capra_hircus
ENSUAMG00000004752	MBD1	98	82.155	ENSTSYG00000000509	MBD1	99	80.899	Carlito_syrichta
ENSUAMG00000004752	MBD1	99	63.621	ENSCAPG00000015782	MBD1	100	68.165	Cavia_aperea
ENSUAMG00000004752	MBD1	100	66.472	ENSCPOG00000001671	MBD1	96	69.956	Cavia_porcellus
ENSUAMG00000004752	MBD1	100	81.068	ENSCCAG00000034600	MBD1	99	75.208	Cebus_capucinus
ENSUAMG00000004752	MBD1	100	84.323	ENSCATG00000029959	MBD1	100	83.333	Cercocebus_atys
ENSUAMG00000004752	MBD1	97	81.250	ENSCLAG00000007457	MBD1	87	80.417	Chinchilla_lanigera
ENSUAMG00000004752	MBD1	100	84.158	ENSCSAG00000018070	MBD1	100	83.168	Chlorocebus_sabaeus
ENSUAMG00000004752	MBD1	100	84.158	ENSCANG00000033425	MBD1	93	91.901	Colobus_angolensis_palliatus
ENSUAMG00000004752	MBD1	100	71.358	ENSCGRG00001014843	Mbd1	100	70.656	Cricetulus_griseus_chok1gshd
ENSUAMG00000004752	MBD1	100	53.662	ENSCGRG00000014135	Mbd1	94	67.254	Cricetulus_griseus_crigri
ENSUAMG00000004752	MBD1	100	81.935	ENSDNOG00000015998	MBD1	100	83.065	Dasypus_novemcinctus
ENSUAMG00000004752	MBD1	99	67.938	ENSDORG00000013917	Mbd1	89	80.986	Dipodomys_ordii
ENSUAMG00000004752	MBD1	100	86.936	ENSEASG00005003857	MBD1	100	86.625	Equus_asinus_asinus
ENSUAMG00000004752	MBD1	100	90.000	ENSECAG00000011497	MBD1	81	86.625	Equus_caballus
ENSUAMG00000004752	MBD1	100	93.468	ENSFCAG00000015730	MBD1	99	90.865	Felis_catus
ENSUAMG00000004752	MBD1	86	82.792	ENSFDAG00000011085	MBD1	89	82.792	Fukomys_damarensis
ENSUAMG00000004752	MBD1	66	31.553	ENSGACG00000012106	-	61	32.208	Gasterosteus_aculeatus
ENSUAMG00000004752	MBD1	100	83.993	ENSGGOG00000016966	MBD1	93	91.901	Gorilla_gorilla
ENSUAMG00000004752	MBD1	100	80.890	ENSHGLG00000008740	MBD1	100	80.033	Heterocephalus_glaber_female
ENSUAMG00000004752	MBD1	85	88.636	ENSHGLG00100005198	MBD1	98	88.636	Heterocephalus_glaber_male
ENSUAMG00000004752	MBD1	52	52.308	ENSHCOG00000009952	mbd1b	52	32.850	Hippocampus_comes
ENSUAMG00000004752	MBD1	100	78.930	ENSSTOG00000007780	MBD1	100	78.247	Ictidomys_tridecemlineatus
ENSUAMG00000004752	MBD1	98	68.870	ENSJJAG00000022859	Mbd1	88	82.746	Jaculus_jaculus
ENSUAMG00000004752	MBD1	63	42.440	ENSLACG00000002414	-	58	42.204	Latimeria_chalumnae
ENSUAMG00000004752	MBD1	99	72.968	ENSLAFG00000031328	MBD1	100	70.788	Loxodonta_africana
ENSUAMG00000004752	MBD1	100	83.993	ENSMFAG00000026335	MBD1	100	83.003	Macaca_fascicularis
ENSUAMG00000004752	MBD1	100	80.666	ENSMMUG00000009050	MBD1	99	82.504	Macaca_mulatta
ENSUAMG00000004752	MBD1	100	83.993	ENSMNEG00000038822	MBD1	100	83.003	Macaca_nemestrina
ENSUAMG00000004752	MBD1	100	84.158	ENSMLEG00000043121	MBD1	100	83.168	Mandrillus_leucophaeus
ENSUAMG00000004752	MBD1	62	30.529	ENSMAMG00000023341	-	50	66.102	Mastacembelus_armatus
ENSUAMG00000004752	MBD1	58	34.302	ENSMZEG00005010421	mbd1b	50	33.831	Maylandia_zebra
ENSUAMG00000004752	MBD1	100	82.010	ENSMICG00000006414	MBD1	100	82.114	Microcebus_murinus
ENSUAMG00000004752	MBD1	63	43.928	ENSMODG00000001286	-	57	44.503	Monodelphis_domestica
ENSUAMG00000004752	MBD1	99	64.921	ENSMUSG00000024561	Mbd1	100	63.650	Mus_musculus
ENSUAMG00000004752	MBD1	100	64.818	MGP_PahariEiJ_G0019128	Mbd1	100	64.127	Mus_pahari
ENSUAMG00000004752	MBD1	98	66.505	MGP_SPRETEiJ_G0023304	Mbd1	99	64.668	Mus_spretus
ENSUAMG00000004752	MBD1	97	91.506	ENSMPUG00000008843	MBD1	95	89.744	Mustela_putorius_furo
ENSUAMG00000004752	MBD1	97	84.135	ENSMLUG00000008286	MBD1	95	83.788	Myotis_lucifugus
ENSUAMG00000004752	MBD1	98	66.667	ENSNGAG00000011412	Mbd1	89	76.351	Nannospalax_galili
ENSUAMG00000004752	MBD1	98	62.309	ENSNLEG00000032711	-	81	81.690	Nomascus_leucogenys
ENSUAMG00000004752	MBD1	100	83.663	ENSNLEG00000011661	-	93	92.254	Nomascus_leucogenys
ENSUAMG00000004752	MBD1	100	69.421	ENSOPRG00000007647	MBD1	100	69.752	Ochotona_princeps
ENSUAMG00000004752	MBD1	86	86.926	ENSODEG00000018451	MBD1	93	79.870	Octodon_degus
ENSUAMG00000004752	MBD1	84	47.744	ENSOANG00000014593	-	100	46.266	Ornithorhynchus_anatinus
ENSUAMG00000004752	MBD1	97	78.400	ENSOCUG00000006554	MBD1	99	78.135	Oryctolagus_cuniculus
ENSUAMG00000004752	MBD1	100	78.281	ENSOGAG00000003784	MBD1	95	81.013	Otolemur_garnettii
ENSUAMG00000004752	MBD1	97	83.680	ENSOARG00000004218	MBD1	94	83.040	Ovis_aries
ENSUAMG00000004752	MBD1	100	83.993	ENSPPAG00000038886	MBD1	100	83.003	Pan_paniscus
ENSUAMG00000004752	MBD1	100	93.245	ENSPPRG00000021387	MBD1	100	93.245	Panthera_pardus
ENSUAMG00000004752	MBD1	100	93.081	ENSPTIG00000021231	MBD1	100	93.081	Panthera_tigris_altaica
ENSUAMG00000004752	MBD1	100	83.993	ENSPTRG00000010021	MBD1	100	83.003	Pan_troglodytes
ENSUAMG00000004752	MBD1	98	83.811	ENSPANG00000010867	MBD1	99	82.504	Papio_anubis
ENSUAMG00000004752	MBD1	99	60.403	ENSPEMG00000022630	Mbd1	89	68.683	Peromyscus_maniculatus_bairdii
ENSUAMG00000004752	MBD1	96	48.485	ENSPCIG00000027937	-	79	47.500	Phascolarctos_cinereus
ENSUAMG00000004752	MBD1	53	53.261	ENSPFOG00000007511	mbd1b	53	30.805	Poecilia_formosa
ENSUAMG00000004752	MBD1	67	32.187	ENSPMEG00000024145	mbd1b	54	30.805	Poecilia_mexicana
ENSUAMG00000004752	MBD1	100	84.158	ENSPPYG00000009158	MBD1	91	83.168	Pongo_abelii
ENSUAMG00000004752	MBD1	99	75.993	ENSPCAG00000001648	MBD1	90	87.833	Procavia_capensis
ENSUAMG00000004752	MBD1	100	84.539	ENSPCOG00000012450	MBD1	100	84.158	Propithecus_coquereli
ENSUAMG00000004752	MBD1	99	52.685	ENSRNOG00000024104	Mbd1	91	68.145	Rattus_norvegicus
ENSUAMG00000004752	MBD1	100	75.908	ENSRBIG00000041294	MBD1	100	75.083	Rhinopithecus_bieti
ENSUAMG00000004752	MBD1	100	83.663	ENSRROG00000032517	MBD1	93	91.901	Rhinopithecus_roxellana
ENSUAMG00000004752	MBD1	98	82.799	ENSSBOG00000027169	MBD1	91	89.644	Saimiri_boliviensis_boliviensis
ENSUAMG00000004752	MBD1	75	43.441	ENSSHAG00000003661	-	100	44.754	Sarcophilus_harrisii
ENSUAMG00000004752	MBD1	100	91.613	ENSSSCG00000004516	MBD1	100	91.129	Sus_scrofa
ENSUAMG00000004752	MBD1	66	30.353	ENSTRUG00000013422	mbd1b	52	31.121	Takifugu_rubripes
ENSUAMG00000004752	MBD1	71	80.000	ENSTBEG00000012651	-	68	80.000	Tupaia_belangeri
ENSUAMG00000004752	MBD1	100	84.349	ENSTTRG00000015523	MBD1	100	83.361	Tursiops_truncatus
ENSUAMG00000004752	MBD1	100	96.046	ENSUMAG00000002947	MBD1	100	96.046	Ursus_maritimus