EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000005475 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 19459 bases
Position: chrLZNR01000223.1:170207-189665
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000006368	ResIII	PF04851.15	2.3e-08	1	1
ENSUAMP00000006397	ResIII	PF04851.15	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000007201	CHD3-201	5319	-	ENSUAMP00000006368	1772 (aa)	-	-
ENSUAMT00000007234	CHD3-202	5517	-	ENSUAMP00000006397	1838 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000005475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000005475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000005475	CHD3	91	81.517	ENSUAMG00000016452	-	99	72.120
ENSUAMG00000005475	CHD3	90	84.977	ENSUAMG00000024509	CHD5	89	81.643
ENSUAMG00000005475	CHD3	53	35.163	ENSUAMG00000024036	CHD6	84	42.540

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000005475	CHD3	99	97.387	ENSG00000170004	CHD3	92	97.387	Homo_sapiens
ENSUAMG00000005475	CHD3	86	81.053	ENSAPOG00000005614	chd3	94	81.053	Acanthochromis_polyacanthus
ENSUAMG00000005475	CHD3	74	97.074	ENSAMEG00000003025	-	100	97.074	Ailuropoda_melanoleuca
ENSUAMG00000005475	CHD3	87	87.861	ENSACIG00000019671	chd3	99	87.861	Amphilophus_citrinellus
ENSUAMG00000005475	CHD3	95	83.830	ENSAOCG00000023784	chd3	97	81.053	Amphiprion_ocellaris
ENSUAMG00000005475	CHD3	95	83.830	ENSAPEG00000006341	chd3	82	83.830	Amphiprion_percula
ENSUAMG00000005475	CHD3	95	81.893	ENSATEG00000000848	chd3	95	82.105	Anabas_testudineus
ENSUAMG00000005475	CHD3	96	87.967	ENSACAG00000004276	CHD3	89	84.253	Anolis_carolinensis
ENSUAMG00000005475	CHD3	99	97.278	ENSANAG00000034323	CHD3	97	97.278	Aotus_nancymaae
ENSUAMG00000005475	CHD3	93	80.449	ENSACLG00000009222	chd3	95	73.847	Astatotilapia_calliptera
ENSUAMG00000005475	CHD3	99	96.844	ENSBTAG00000014377	CHD3	91	96.832	Bos_taurus
ENSUAMG00000005475	CHD3	99	97.224	ENSCJAG00000014766	CHD3	92	97.224	Callithrix_jacchus
ENSUAMG00000005475	CHD3	99	97.823	ENSCAFG00000016859	CHD3	92	97.823	Canis_familiaris
ENSUAMG00000005475	CHD3	99	97.823	ENSCAFG00020007422	CHD3	99	97.823	Canis_lupus_dingo
ENSUAMG00000005475	CHD3	99	97.333	ENSCHIG00000016737	CHD3	93	97.333	Capra_hircus
ENSUAMG00000005475	CHD3	99	97.169	ENSTSYG00000035658	CHD3	99	94.628	Carlito_syrichta
ENSUAMG00000005475	CHD3	99	94.774	ENSCAPG00000014864	CHD3	91	94.774	Cavia_aperea
ENSUAMG00000005475	CHD3	99	96.625	ENSCPOG00000022653	CHD3	91	96.625	Cavia_porcellus
ENSUAMG00000005475	CHD3	99	97.115	ENSCCAG00000034792	CHD3	92	97.115	Cebus_capucinus
ENSUAMG00000005475	CHD3	99	97.115	ENSCATG00000041717	CHD3	92	97.115	Cercocebus_atys
ENSUAMG00000005475	CHD3	99	96.952	ENSCLAG00000010523	CHD3	93	96.952	Chinchilla_lanigera
ENSUAMG00000005475	CHD3	99	96.952	ENSCSAG00000011122	CHD3	93	96.952	Chlorocebus_sabaeus
ENSUAMG00000005475	CHD3	92	85.387	ENSCPBG00000011966	CHD3	99	84.751	Chrysemys_picta_bellii
ENSUAMG00000005475	CHD3	99	97.060	ENSCANG00000037641	CHD3	99	94.089	Colobus_angolensis_palliatus
ENSUAMG00000005475	CHD3	98	97.009	ENSCGRG00001011306	Chd3	93	95.647	Cricetulus_griseus_chok1gshd
ENSUAMG00000005475	CHD3	94	89.391	ENSCGRG00000007878	Chd3	92	88.986	Cricetulus_griseus_crigri
ENSUAMG00000005475	CHD3	93	88.208	ENSCSEG00000004489	chd3	98	73.798	Cynoglossus_semilaevis
ENSUAMG00000005475	CHD3	98	74.183	ENSCVAG00000007293	chd3	98	74.739	Cyprinodon_variegatus
ENSUAMG00000005475	CHD3	93	82.274	ENSDARG00000021405	chd3	100	73.630	Danio_rerio
ENSUAMG00000005475	CHD3	99	81.257	ENSDNOG00000047846	CHD3	91	80.661	Dasypus_novemcinctus
ENSUAMG00000005475	CHD3	99	96.353	ENSDORG00000010713	Chd3	93	96.353	Dipodomys_ordii
ENSUAMG00000005475	CHD3	96	96.581	ENSETEG00000017733	CHD3	93	92.654	Echinops_telfairi
ENSUAMG00000005475	CHD3	72	86.893	ENSEBUG00000008310	chd3	85	83.871	Eptatretus_burgeri
ENSUAMG00000005475	CHD3	99	97.169	ENSEASG00005019360	CHD3	99	97.169	Equus_asinus_asinus
ENSUAMG00000005475	CHD3	99	97.224	ENSECAG00000010051	CHD3	99	97.224	Equus_caballus
ENSUAMG00000005475	CHD3	92	98.305	ENSEEUG00000015205	CHD3	86	98.305	Erinaceus_europaeus
ENSUAMG00000005475	CHD3	85	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSUAMG00000005475	CHD3	99	97.278	ENSFCAG00000009629	CHD3	89	97.278	Felis_catus
ENSUAMG00000005475	CHD3	99	96.734	ENSFDAG00000008220	CHD3	92	96.734	Fukomys_damarensis
ENSUAMG00000005475	CHD3	91	82.759	ENSGMOG00000013599	chd3	84	82.759	Gadus_morhua
ENSUAMG00000005475	CHD3	62	73.596	ENSGAFG00000004055	chd3	99	75.175	Gambusia_affinis
ENSUAMG00000005475	CHD3	99	71.122	ENSGACG00000019275	chd3	94	71.551	Gasterosteus_aculeatus
ENSUAMG00000005475	CHD3	82	84.421	ENSGAGG00000013164	CHD3	98	84.621	Gopherus_agassizii
ENSUAMG00000005475	CHD3	99	97.333	ENSGGOG00000013496	CHD3	99	94.304	Gorilla_gorilla
ENSUAMG00000005475	CHD3	99	96.734	ENSHGLG00000012017	CHD3	92	96.734	Heterocephalus_glaber_female
ENSUAMG00000005475	CHD3	88	91.304	ENSHGLG00100013902	CHD3	91	91.304	Heterocephalus_glaber_male
ENSUAMG00000005475	CHD3	91	88.837	ENSHCOG00000010170	chd3	83	88.837	Hippocampus_comes
ENSUAMG00000005475	CHD3	90	79.223	ENSIPUG00000003271	chd3	96	78.532	Ictalurus_punctatus
ENSUAMG00000005475	CHD3	99	96.952	ENSSTOG00000025907	CHD3	93	96.952	Ictidomys_tridecemlineatus
ENSUAMG00000005475	CHD3	99	96.081	ENSJJAG00000017633	Chd3	93	96.081	Jaculus_jaculus
ENSUAMG00000005475	CHD3	87	90.047	ENSKMAG00000019292	chd3	95	73.835	Kryptolebias_marmoratus
ENSUAMG00000005475	CHD3	94	74.728	ENSLBEG00000028485	chd3	92	71.571	Labrus_bergylta
ENSUAMG00000005475	CHD3	98	74.306	ENSLACG00000008031	CHD3	94	73.709	Latimeria_chalumnae
ENSUAMG00000005475	CHD3	95	86.307	ENSLOCG00000013965	chd3	85	86.307	Lepisosteus_oculatus
ENSUAMG00000005475	CHD3	95	92.991	ENSLAFG00000000572	CHD3	93	92.991	Loxodonta_africana
ENSUAMG00000005475	CHD3	99	97.060	ENSMFAG00000020113	CHD3	99	95.267	Macaca_fascicularis
ENSUAMG00000005475	CHD3	99	94.502	ENSMMUG00000022221	CHD3	92	93.869	Macaca_mulatta
ENSUAMG00000005475	CHD3	100	96.464	ENSMNEG00000001728	CHD3	99	96.464	Macaca_nemestrina
ENSUAMG00000005475	CHD3	99	97.115	ENSMLEG00000032249	CHD3	92	97.115	Mandrillus_leucophaeus
ENSUAMG00000005475	CHD3	92	74.284	ENSMAMG00000000564	chd3	94	86.705	Mastacembelus_armatus
ENSUAMG00000005475	CHD3	99	95.430	ENSMAUG00000013873	Chd3	99	93.025	Mesocricetus_auratus
ENSUAMG00000005475	CHD3	99	97.006	ENSMICG00000008741	CHD3	92	94.137	Microcebus_murinus
ENSUAMG00000005475	CHD3	99	95.593	ENSMOCG00000004848	Chd3	93	95.484	Microtus_ochrogaster
ENSUAMG00000005475	CHD3	94	88.991	ENSMMOG00000012699	chd3	90	88.991	Mola_mola
ENSUAMG00000005475	CHD3	99	91.458	ENSMODG00000007509	CHD3	99	91.404	Monodelphis_domestica
ENSUAMG00000005475	CHD3	99	95.435	MGP_CAROLIEiJ_G0016564	Chd3	93	94.105	Mus_caroli
ENSUAMG00000005475	CHD3	98	97.009	ENSMUSG00000018474	Chd3	93	94.216	Mus_musculus
ENSUAMG00000005475	CHD3	99	95.813	MGP_PahariEiJ_G0017695	Chd3	93	94.324	Mus_pahari
ENSUAMG00000005475	CHD3	98	97.009	MGP_SPRETEiJ_G0017400	Chd3	93	94.160	Mus_spretus
ENSUAMG00000005475	CHD3	94	97.674	ENSMPUG00000008861	CHD3	100	97.674	Mustela_putorius_furo
ENSUAMG00000005475	CHD3	99	96.629	ENSMLUG00000014643	-	92	96.629	Myotis_lucifugus
ENSUAMG00000005475	CHD3	99	96.135	ENSNGAG00000000773	Chd3	91	96.135	Nannospalax_galili
ENSUAMG00000005475	CHD3	92	74.007	ENSNBRG00000000636	chd3	97	75.787	Neolamprologus_brichardi
ENSUAMG00000005475	CHD3	99	93.205	ENSNLEG00000009770	CHD3	93	93.934	Nomascus_leucogenys
ENSUAMG00000005475	CHD3	86	95.726	ENSMEUG00000005852	CHD3	80	95.726	Notamacropus_eugenii
ENSUAMG00000005475	CHD3	99	95.101	ENSOPRG00000011069	CHD3	98	95.101	Ochotona_princeps
ENSUAMG00000005475	CHD3	99	96.625	ENSODEG00000017785	CHD3	92	96.625	Octodon_degus
ENSUAMG00000005475	CHD3	95	84.322	ENSONIG00000009292	chd3	89	84.322	Oreochromis_niloticus
ENSUAMG00000005475	CHD3	99	91.712	ENSOCUG00000029299	CHD3	93	91.554	Oryctolagus_cuniculus
ENSUAMG00000005475	CHD3	86	71.555	ENSORLG00000007107	chd3	93	72.124	Oryzias_latipes
ENSUAMG00000005475	CHD3	56	80.332	ENSORLG00020008387	chd3	94	73.559	Oryzias_latipes_hni
ENSUAMG00000005475	CHD3	87	82.000	ENSOMEG00000013691	chd3	99	75.902	Oryzias_melastigma
ENSUAMG00000005475	CHD3	99	96.788	ENSOGAG00000003216	CHD3	93	96.788	Otolemur_garnettii
ENSUAMG00000005475	CHD3	99	94.728	ENSOARG00000017855	CHD3	92	94.728	Ovis_aries
ENSUAMG00000005475	CHD3	99	94.855	ENSPPAG00000032886	CHD3	99	93.626	Pan_paniscus
ENSUAMG00000005475	CHD3	99	97.496	ENSPPRG00000000626	CHD3	92	97.496	Panthera_pardus
ENSUAMG00000005475	CHD3	99	97.441	ENSPTRG00000008714	CHD3	99	94.465	Pan_troglodytes
ENSUAMG00000005475	CHD3	99	97.115	ENSPANG00000023938	CHD3	99	95.321	Papio_anubis
ENSUAMG00000005475	CHD3	96	81.890	ENSPKIG00000006305	chd3	94	78.859	Paramormyrops_kingsleyae
ENSUAMG00000005475	CHD3	59	88.626	ENSPSIG00000010177	CHD3	98	88.899	Pelodiscus_sinensis
ENSUAMG00000005475	CHD3	99	95.647	ENSPEMG00000014262	Chd3	92	95.539	Peromyscus_maniculatus_bairdii
ENSUAMG00000005475	CHD3	99	91.621	ENSPCIG00000005442	CHD3	93	95.528	Phascolarctos_cinereus
ENSUAMG00000005475	CHD3	95	83.898	ENSPFOG00000012464	chd3	81	83.898	Poecilia_formosa
ENSUAMG00000005475	CHD3	89	83.401	ENSPLAG00000002887	chd3	89	83.401	Poecilia_latipinna
ENSUAMG00000005475	CHD3	52	79.191	ENSPMEG00000016725	chd3	91	72.594	Poecilia_mexicana
ENSUAMG00000005475	CHD3	92	80.769	ENSPREG00000011044	chd3	93	79.042	Poecilia_reticulata
ENSUAMG00000005475	CHD3	99	94.502	ENSPPYG00000007940	CHD3	93	94.502	Pongo_abelii
ENSUAMG00000005475	CHD3	96	96.481	ENSPCAG00000004350	CHD3	90	96.481	Procavia_capensis
ENSUAMG00000005475	CHD3	99	96.897	ENSPCOG00000020952	CHD3	92	96.844	Propithecus_coquereli
ENSUAMG00000005475	CHD3	86	98.037	ENSPVAG00000016344	CHD3	80	98.037	Pteropus_vampyrus
ENSUAMG00000005475	CHD3	96	78.925	ENSPNAG00000020393	chd3	98	79.274	Pygocentrus_nattereri
ENSUAMG00000005475	CHD3	99	95.217	ENSRNOG00000009722	Chd3	99	95.109	Rattus_norvegicus
ENSUAMG00000005475	CHD3	100	93.451	ENSRBIG00000033562	CHD3	99	93.451	Rhinopithecus_bieti
ENSUAMG00000005475	CHD3	100	94.912	ENSRROG00000029554	CHD3	99	94.912	Rhinopithecus_roxellana
ENSUAMG00000005475	CHD3	100	96.681	ENSSBOG00000020719	CHD3	99	96.681	Saimiri_boliviensis_boliviensis
ENSUAMG00000005475	CHD3	99	91.567	ENSSHAG00000014412	CHD3	93	91.458	Sarcophilus_harrisii
ENSUAMG00000005475	CHD3	94	78.790	ENSSFOG00015023123	chd3	97	73.885	Scleropages_formosus
ENSUAMG00000005475	CHD3	88	92.271	ENSSMAG00000006451	chd3	95	81.579	Scophthalmus_maximus
ENSUAMG00000005475	CHD3	58	71.935	ENSSDUG00000005792	chd3	95	72.848	Seriola_dumerili
ENSUAMG00000005475	CHD3	95	83.830	ENSSPAG00000013694	chd3	97	86.705	Stegastes_partitus
ENSUAMG00000005475	CHD3	99	96.899	ENSSSCG00000021363	CHD3	99	96.899	Sus_scrofa
ENSUAMG00000005475	CHD3	82	74.784	ENSTRUG00000014990	chd3	89	75.116	Takifugu_rubripes
ENSUAMG00000005475	CHD3	99	72.993	ENSTNIG00000012998	chd3	93	73.054	Tetraodon_nigroviridis
ENSUAMG00000005475	CHD3	68	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSUAMG00000005475	CHD3	99	97.660	ENSTTRG00000010295	CHD3	90	97.660	Tursiops_truncatus
ENSUAMG00000005475	CHD3	60	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSUAMG00000005475	CHD3	99	97.823	ENSVVUG00000028011	CHD3	96	97.823	Vulpes_vulpes
ENSUAMG00000005475	CHD3	99	73.594	ENSXETG00000012991	chd3	90	73.287	Xenopus_tropicalis
ENSUAMG00000005475	CHD3	50	91.429	ENSXCOG00000000809	chd3	93	81.081	Xiphophorus_couchianus
ENSUAMG00000005475	CHD3	87	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus