EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000005639 (Gene tree)
Gene ID: -
Gene Symbol: NCL
Alias: C23|Nsr1
Full Name: nucleolin
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 6848 bases
Position: chrLZNR01004974.1:27616-34463
Accession: 7667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000006426	RRM_1	PF00076.22	3.9e-59	1	4
ENSUAMP00000006426	RRM_1	PF00076.22	3.9e-59	2	4
ENSUAMP00000006426	RRM_1	PF00076.22	3.9e-59	3	4
ENSUAMP00000006426	RRM_1	PF00076.22	3.9e-59	4	4
ENSUAMP00000006425	RRM_1	PF00076.22	1.3e-58	1	4
ENSUAMP00000006425	RRM_1	PF00076.22	1.3e-58	2	4
ENSUAMP00000006425	RRM_1	PF00076.22	1.3e-58	3	4
ENSUAMP00000006425	RRM_1	PF00076.22	1.3e-58	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000007266	NCL-201	1944	-	ENSUAMP00000006425	647 (aa)	-	-
ENSUAMT00000007267	NCL-202	1512	-	ENSUAMP00000006426	503 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000005639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000005639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000005639	NCL	69	33.871	ENSUAMG00000009532	TIAL1	71	33.871
ENSUAMG00000005639	NCL	67	31.325	ENSUAMG00000025833	TIA1	74	31.073
ENSUAMG00000005639	NCL	69	32.184	ENSUAMG00000024428	PABPC1	60	32.184

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000005639	NCL	100	93.638	ENSG00000115053	NCL	100	90.541	Homo_sapiens
ENSUAMG00000005639	NCL	100	98.211	ENSAMEG00000016289	NCL	73	96.962	Ailuropoda_melanoleuca
ENSUAMG00000005639	NCL	94	76.712	ENSANAG00000024378	-	77	79.592	Aotus_nancymaae
ENSUAMG00000005639	NCL	87	97.039	ENSANAG00000035814	-	75	93.000	Aotus_nancymaae
ENSUAMG00000005639	NCL	100	95.464	ENSBTAG00000016174	NCL	73	92.961	Bos_taurus
ENSUAMG00000005639	NCL	81	92.977	ENSBTAG00000026909	-	85	92.977	Bos_taurus
ENSUAMG00000005639	NCL	53	90.984	ENSBTAG00000050728	-	71	90.984	Bos_taurus
ENSUAMG00000005639	NCL	99	81.852	ENSBTAG00000051320	-	67	90.610	Bos_taurus
ENSUAMG00000005639	NCL	87	97.039	ENSCJAG00000013538	NCL	71	96.316	Callithrix_jacchus
ENSUAMG00000005639	NCL	100	96.223	ENSCAFG00000011037	NCL	70	96.223	Canis_familiaris
ENSUAMG00000005639	NCL	100	96.620	ENSCAFG00020023145	NCL	77	95.511	Canis_lupus_dingo
ENSUAMG00000005639	NCL	88	80.813	ENSCHIG00000012143	-	67	82.632	Capra_hircus
ENSUAMG00000005639	NCL	87	94.533	ENSCHIG00000021052	-	81	96.853	Capra_hircus
ENSUAMG00000005639	NCL	88	86.130	ENSCHIG00000026149	-	53	91.029	Capra_hircus
ENSUAMG00000005639	NCL	100	93.651	ENSCHIG00000010894	-	74	94.724	Capra_hircus
ENSUAMG00000005639	NCL	86	81.671	ENSTSYG00000036886	-	62	85.000	Carlito_syrichta
ENSUAMG00000005639	NCL	83	95.973	ENSTSYG00000029779	-	74	94.408	Carlito_syrichta
ENSUAMG00000005639	NCL	80	96.834	ENSTSYG00000004355	-	67	96.579	Carlito_syrichta
ENSUAMG00000005639	NCL	89	89.749	ENSCAPG00000009405	NCL	72	87.895	Cavia_aperea
ENSUAMG00000005639	NCL	89	94.077	ENSCPOG00000001034	NCL	72	93.140	Cavia_porcellus
ENSUAMG00000005639	NCL	84	88.442	ENSCCAG00000000551	-	93	88.557	Cebus_capucinus
ENSUAMG00000005639	NCL	87	94.533	ENSCCAG00000021040	-	54	96.570	Cebus_capucinus
ENSUAMG00000005639	NCL	100	93.241	ENSCATG00000037033	NCL	72	96.842	Cercocebus_atys
ENSUAMG00000005639	NCL	100	89.264	ENSCLAG00000013080	NCL	76	87.224	Chinchilla_lanigera
ENSUAMG00000005639	NCL	87	97.273	ENSCSAG00000006660	NCL	95	97.273	Chlorocebus_sabaeus
ENSUAMG00000005639	NCL	87	77.294	ENSCHOG00000012860	NCL	78	81.746	Choloepus_hoffmanni
ENSUAMG00000005639	NCL	77	92.268	ENSCANG00000036756	NCL	88	93.229	Colobus_angolensis_palliatus
ENSUAMG00000005639	NCL	76	78.646	ENSCGRG00001022350	-	88	65.763	Cricetulus_griseus_chok1gshd
ENSUAMG00000005639	NCL	88	83.296	ENSCGRG00001024315	-	67	88.684	Cricetulus_griseus_chok1gshd
ENSUAMG00000005639	NCL	88	85.553	ENSCGRG00000017894	-	88	71.382	Cricetulus_griseus_crigri
ENSUAMG00000005639	NCL	76	78.646	ENSCGRG00000000507	-	56	78.421	Cricetulus_griseus_crigri
ENSUAMG00000005639	NCL	87	93.651	ENSDNOG00000010783	-	75	92.118	Dasypus_novemcinctus
ENSUAMG00000005639	NCL	89	82.086	ENSDNOG00000046347	-	81	81.406	Dasypus_novemcinctus
ENSUAMG00000005639	NCL	73	73.224	ENSDORG00000023596	-	52	72.237	Dipodomys_ordii
ENSUAMG00000005639	NCL	79	83.641	ENSDORG00000012513	-	54	83.641	Dipodomys_ordii
ENSUAMG00000005639	NCL	84	60.223	ENSETEG00000008139	-	92	60.297	Echinops_telfairi
ENSUAMG00000005639	NCL	87	61.905	ENSETEG00000008553	-	80	65.000	Echinops_telfairi
ENSUAMG00000005639	NCL	75	90.716	ENSETEG00000014756	-	86	90.765	Echinops_telfairi
ENSUAMG00000005639	NCL	76	91.316	ENSETEG00000018937	-	53	91.293	Echinops_telfairi
ENSUAMG00000005639	NCL	100	96.832	ENSEASG00005008488	NCL	96	93.974	Equus_asinus_asinus
ENSUAMG00000005639	NCL	100	97.228	ENSECAG00000021868	NCL	75	94.621	Equus_caballus
ENSUAMG00000005639	NCL	75	90.501	ENSEEUG00000005913	NCL	54	90.501	Erinaceus_europaeus
ENSUAMG00000005639	NCL	100	96.429	ENSFCAG00000027622	NCL	70	96.429	Felis_catus
ENSUAMG00000005639	NCL	87	94.533	ENSFDAG00000014291	NCL	54	93.668	Fukomys_damarensis
ENSUAMG00000005639	NCL	100	94.036	ENSGGOG00000004300	NCL	84	92.834	Gorilla_gorilla
ENSUAMG00000005639	NCL	93	94.761	ENSHGLG00000002031	-	76	90.394	Heterocephalus_glaber_female
ENSUAMG00000005639	NCL	88	79.592	ENSHGLG00000011069	-	55	85.450	Heterocephalus_glaber_female
ENSUAMG00000005639	NCL	84	76.600	ENSHGLG00100000745	-	59	84.350	Heterocephalus_glaber_male
ENSUAMG00000005639	NCL	93	94.533	ENSHGLG00100014537	-	62	94.533	Heterocephalus_glaber_male
ENSUAMG00000005639	NCL	87	78.815	ENSJJAG00000016165	Ncl	87	81.888	Jaculus_jaculus
ENSUAMG00000005639	NCL	88	78.104	ENSLAFG00000013061	NCL	71	85.827	Loxodonta_africana
ENSUAMG00000005639	NCL	100	94.036	ENSMFAG00000040385	NCL	74	94.710	Macaca_fascicularis
ENSUAMG00000005639	NCL	100	94.036	ENSMMUG00000018094	NCL	77	98.929	Macaca_mulatta
ENSUAMG00000005639	NCL	100	94.036	ENSMNEG00000023839	NCL	79	98.929	Macaca_nemestrina
ENSUAMG00000005639	NCL	100	93.241	ENSMLEG00000028935	NCL	72	96.842	Mandrillus_leucophaeus
ENSUAMG00000005639	NCL	100	93.439	ENSMICG00000002538	-	71	91.646	Microcebus_murinus
ENSUAMG00000005639	NCL	86	80.321	ENSMICG00000029975	-	76	79.608	Microcebus_murinus
ENSUAMG00000005639	NCL	88	81.941	MGP_CAROLIEiJ_G0014362	Ncl	67	86.579	Mus_caroli
ENSUAMG00000005639	NCL	88	82.393	ENSMUSG00000026234	Ncl	67	86.316	Mus_musculus
ENSUAMG00000005639	NCL	88	81.716	MGP_PahariEiJ_G0027599	Ncl	53	86.544	Mus_pahari
ENSUAMG00000005639	NCL	88	82.167	MGP_SPRETEiJ_G0015164	Ncl	67	86.316	Mus_spretus
ENSUAMG00000005639	NCL	52	98.936	ENSMPUG00000004834	-	96	98.936	Mustela_putorius_furo
ENSUAMG00000005639	NCL	100	93.837	ENSMLUG00000014547	NCL	86	78.339	Myotis_lucifugus
ENSUAMG00000005639	NCL	75	73.867	ENSNGAG00000006188	-	54	73.087	Nannospalax_galili
ENSUAMG00000005639	NCL	88	85.327	ENSNGAG00000002454	-	53	89.974	Nannospalax_galili
ENSUAMG00000005639	NCL	100	79.319	ENSNLEG00000014107	-	79	84.466	Nomascus_leucogenys
ENSUAMG00000005639	NCL	100	74.553	ENSODEG00000002441	-	74	84.746	Octodon_degus
ENSUAMG00000005639	NCL	100	67.687	ENSODEG00000007803	-	55	62.360	Octodon_degus
ENSUAMG00000005639	NCL	89	89.977	ENSODEG00000003281	-	72	89.974	Octodon_degus
ENSUAMG00000005639	NCL	75	89.655	ENSODEG00000002748	-	85	74.606	Octodon_degus
ENSUAMG00000005639	NCL	87	95.227	ENSOCUG00000004312	NCL	67	95.216	Oryctolagus_cuniculus
ENSUAMG00000005639	NCL	75	87.599	ENSOGAG00000027852	NCL	81	81.855	Otolemur_garnettii
ENSUAMG00000005639	NCL	77	80.570	ENSOARG00000004072	-	61	81.003	Ovis_aries
ENSUAMG00000005639	NCL	88	90.476	ENSOARG00000013710	-	64	96.042	Ovis_aries
ENSUAMG00000005639	NCL	88	91.256	ENSOARG00000020709	-	70	96.606	Ovis_aries
ENSUAMG00000005639	NCL	100	93.042	ENSPPAG00000011619	NCL	84	92.834	Pan_paniscus
ENSUAMG00000005639	NCL	100	96.223	ENSPPRG00000012603	NCL	75	94.541	Panthera_pardus
ENSUAMG00000005639	NCL	100	96.223	ENSPTIG00000010393	NCL	75	94.541	Panthera_tigris_altaica
ENSUAMG00000005639	NCL	100	94.235	ENSPTRG00000013025	NCL	84	93.160	Pan_troglodytes
ENSUAMG00000005639	NCL	100	94.036	ENSPANG00000010292	NCL	74	94.710	Papio_anubis
ENSUAMG00000005639	NCL	100	86.337	ENSPPYG00000013265	NCL	71	81.995	Pongo_abelii
ENSUAMG00000005639	NCL	88	91.648	ENSPCOG00000003051	-	53	96.306	Propithecus_coquereli
ENSUAMG00000005639	NCL	87	84.773	ENSPCOG00000004160	-	74	89.418	Propithecus_coquereli
ENSUAMG00000005639	NCL	100	95.030	ENSPVAG00000000297	NCL	53	98.417	Pteropus_vampyrus
ENSUAMG00000005639	NCL	88	84.650	ENSRNOG00000018273	Ncl	67	88.421	Rattus_norvegicus
ENSUAMG00000005639	NCL	88	91.196	ENSRBIG00000037525	-	71	89.877	Rhinopithecus_bieti
ENSUAMG00000005639	NCL	85	97.232	ENSRBIG00000035396	-	84	95.302	Rhinopithecus_bieti
ENSUAMG00000005639	NCL	93	98.577	ENSRROG00000028756	-	79	98.577	Rhinopithecus_roxellana
ENSUAMG00000005639	NCL	99	88.076	ENSRROG00000036103	-	81	88.043	Rhinopithecus_roxellana
ENSUAMG00000005639	NCL	87	96.811	ENSSBOG00000029193	-	53	96.306	Saimiri_boliviensis_boliviensis
ENSUAMG00000005639	NCL	84	74.429	ENSSBOG00000023094	-	68	75.510	Saimiri_boliviensis_boliviensis
ENSUAMG00000005639	NCL	100	85.317	ENSSBOG00000027549	-	77	89.294	Saimiri_boliviensis_boliviensis
ENSUAMG00000005639	NCL	75	97.889	ENSSSCG00000016275	NCL	52	97.889	Sus_scrofa
ENSUAMG00000005639	NCL	78	84.697	ENSTBEG00000001546	-	85	71.523	Tupaia_belangeri
ENSUAMG00000005639	NCL	82	76.829	ENSTBEG00000002469	-	62	81.714	Tupaia_belangeri
ENSUAMG00000005639	NCL	87	93.364	ENSTTRG00000009094	NCL	71	97.619	Tursiops_truncatus
ENSUAMG00000005639	NCL	100	99.205	ENSUMAG00000015789	NCL	74	99.231	Ursus_maritimus
ENSUAMG00000005639	NCL	82	75.122	ENSVPAG00000001796	NCL	63	86.735	Vicugna_pacos
ENSUAMG00000005639	NCL	100	91.849	ENSVVUG00000025564	NCL	94	91.523	Vulpes_vulpes