EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000005984 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: COD|SNRPB1|Sm-B/B'|SmB/SmB'|snRNP-B
Full Name: -
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 8198 bases
Position: chrLZNR01001912.1:80152-88349
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000006862	LSM	PF01423.22	6.4e-20	1	1
ENSUAMP00000006860	LSM	PF01423.22	6.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000007762	-	645	-	ENSUAMP00000006860	214 (aa)	-	-
ENSUAMT00000007764	-	967	-	ENSUAMP00000006862	209 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000005984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000005984's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000005984	-	78	96.296	ENSUAMG00000016284	SNRPN	56	96.296

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000005984	-	83	100.000	ENSG00000125835	SNRPB	75	100.000	Homo_sapiens
ENSUAMG00000005984	-	87	92.818	ENSAPOG00000019606	snrpb	56	94.643	Acanthochromis_polyacanthus
ENSUAMG00000005984	-	82	100.000	ENSAMEG00000011353	SNRPB	71	100.000	Ailuropoda_melanoleuca
ENSUAMG00000005984	-	84	91.429	ENSACIG00000014480	snrpb	71	94.444	Amphilophus_citrinellus
ENSUAMG00000005984	-	87	91.713	ENSAOCG00000006876	snrpb	69	94.643	Amphiprion_ocellaris
ENSUAMG00000005984	-	87	91.713	ENSAPEG00000021585	snrpb	71	94.643	Amphiprion_percula
ENSUAMG00000005984	-	87	92.265	ENSATEG00000009836	snrpb	69	94.048	Anabas_testudineus
ENSUAMG00000005984	-	80	95.808	ENSACAG00000002053	SNRPB	92	76.056	Anolis_carolinensis
ENSUAMG00000005984	-	86	92.778	ENSANAG00000036271	-	73	92.778	Aotus_nancymaae
ENSUAMG00000005984	-	83	100.000	ENSANAG00000024443	-	75	100.000	Aotus_nancymaae
ENSUAMG00000005984	-	87	91.713	ENSACLG00000014707	snrpb	69	94.643	Astatotilapia_calliptera
ENSUAMG00000005984	-	80	91.667	ENSAMXG00000029434	snrpb	70	94.048	Astyanax_mexicanus
ENSUAMG00000005984	-	90	99.471	ENSBTAG00000001038	SNRPB	78	99.471	Bos_taurus
ENSUAMG00000005984	-	80	93.452	ENSCJAG00000023097	-	70	93.452	Callithrix_jacchus
ENSUAMG00000005984	-	83	100.000	ENSCJAG00000020971	-	75	100.000	Callithrix_jacchus
ENSUAMG00000005984	-	83	100.000	ENSCAFG00000006693	-	75	100.000	Canis_familiaris
ENSUAMG00000005984	-	87	88.043	ENSCAFG00000031109	-	72	84.393	Canis_familiaris
ENSUAMG00000005984	-	83	100.000	ENSCAFG00020016981	-	72	100.000	Canis_lupus_dingo
ENSUAMG00000005984	-	88	99.454	ENSCHIG00000025449	-	78	99.444	Capra_hircus
ENSUAMG00000005984	-	83	100.000	ENSTSYG00000014498	-	75	100.000	Carlito_syrichta
ENSUAMG00000005984	-	88	75.410	ENSTSYG00000032303	-	55	79.333	Carlito_syrichta
ENSUAMG00000005984	-	82	100.000	ENSCAPG00000012669	SNRPB	75	100.000	Cavia_aperea
ENSUAMG00000005984	-	83	100.000	ENSCPOG00000039408	SNRPB	75	100.000	Cavia_porcellus
ENSUAMG00000005984	-	83	100.000	ENSCCAG00000026002	SNRPB	75	100.000	Cebus_capucinus
ENSUAMG00000005984	-	61	88.189	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSUAMG00000005984	-	83	100.000	ENSCATG00000030230	SNRPB	75	100.000	Cercocebus_atys
ENSUAMG00000005984	-	83	100.000	ENSCLAG00000012442	SNRPB	71	100.000	Chinchilla_lanigera
ENSUAMG00000005984	-	83	100.000	ENSCSAG00000010840	SNRPB	75	100.000	Chlorocebus_sabaeus
ENSUAMG00000005984	-	84	96.571	ENSCPBG00000026801	SNRPB	76	96.571	Chrysemys_picta_bellii
ENSUAMG00000005984	-	83	100.000	ENSCANG00000019461	SNRPB	75	100.000	Colobus_angolensis_palliatus
ENSUAMG00000005984	-	88	99.454	ENSCGRG00001023046	Snrpb	76	99.454	Cricetulus_griseus_chok1gshd
ENSUAMG00000005984	-	91	97.368	ENSCGRG00000010423	Snrpb	73	100.000	Cricetulus_griseus_crigri
ENSUAMG00000005984	-	88	91.803	ENSCSEG00000020328	snrpb	70	94.643	Cynoglossus_semilaevis
ENSUAMG00000005984	-	80	92.857	ENSDARG00000011125	snrpb	69	94.643	Danio_rerio
ENSUAMG00000005984	-	83	94.220	ENSDNOG00000007896	-	71	94.220	Dasypus_novemcinctus
ENSUAMG00000005984	-	83	100.000	ENSDNOG00000015545	-	72	100.000	Dasypus_novemcinctus
ENSUAMG00000005984	-	85	99.435	ENSDORG00000029558	Snrpb	76	99.425	Dipodomys_ordii
ENSUAMG00000005984	-	88	63.388	FBgn0262601	SmB	74	70.470	Drosophila_melanogaster
ENSUAMG00000005984	-	88	78.689	ENSETEG00000006830	SNRPB	74	77.381	Echinops_telfairi
ENSUAMG00000005984	-	87	80.108	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSUAMG00000005984	-	83	99.422	ENSEASG00005012991	SNRPB	75	99.422	Equus_asinus_asinus
ENSUAMG00000005984	-	83	100.000	ENSECAG00000011944	SNRPB	75	100.000	Equus_caballus
ENSUAMG00000005984	-	83	100.000	ENSEEUG00000015568	SNRPB	61	100.000	Erinaceus_europaeus
ENSUAMG00000005984	-	80	91.071	ENSELUG00000014564	snrpb	71	93.210	Esox_lucius
ENSUAMG00000005984	-	83	100.000	ENSFCAG00000034090	-	75	100.000	Felis_catus
ENSUAMG00000005984	-	84	96.000	ENSFALG00000004866	SNRPB	69	96.875	Ficedula_albicollis
ENSUAMG00000005984	-	83	100.000	ENSFDAG00000009937	SNRPB	75	100.000	Fukomys_damarensis
ENSUAMG00000005984	-	88	96.175	ENSGALG00000035421	SNRPN	70	97.024	Gallus_gallus
ENSUAMG00000005984	-	82	91.860	ENSGAFG00000019558	snrpb	72	94.012	Gambusia_affinis
ENSUAMG00000005984	-	88	90.710	ENSGACG00000003262	snrpb	70	94.643	Gasterosteus_aculeatus
ENSUAMG00000005984	-	84	96.571	ENSGAGG00000001308	SNRPB	73	96.571	Gopherus_agassizii
ENSUAMG00000005984	-	83	100.000	ENSGGOG00000016138	SNRPB	75	100.000	Gorilla_gorilla
ENSUAMG00000005984	-	87	91.713	ENSHBUG00000008369	snrpb	69	94.643	Haplochromis_burtoni
ENSUAMG00000005984	-	72	90.000	ENSHGLG00000016505	-	72	90.000	Heterocephalus_glaber_female
ENSUAMG00000005984	-	83	100.000	ENSHGLG00000016241	-	75	100.000	Heterocephalus_glaber_female
ENSUAMG00000005984	-	83	100.000	ENSHGLG00100012877	-	75	100.000	Heterocephalus_glaber_male
ENSUAMG00000005984	-	72	90.000	ENSHGLG00100004178	-	72	90.000	Heterocephalus_glaber_male
ENSUAMG00000005984	-	88	91.803	ENSHCOG00000014888	snrpb	70	94.643	Hippocampus_comes
ENSUAMG00000005984	-	80	92.857	ENSIPUG00000024569	SNRPB	70	94.643	Ictalurus_punctatus
ENSUAMG00000005984	-	83	98.266	ENSSTOG00000033664	-	72	98.266	Ictidomys_tridecemlineatus
ENSUAMG00000005984	-	75	92.638	ENSSTOG00000027821	-	75	92.073	Ictidomys_tridecemlineatus
ENSUAMG00000005984	-	83	100.000	ENSJJAG00000024170	Snrpb	75	100.000	Jaculus_jaculus
ENSUAMG00000005984	-	83	94.220	ENSKMAG00000014494	snrpb	68	95.238	Kryptolebias_marmoratus
ENSUAMG00000005984	-	88	91.803	ENSLBEG00000005678	snrpb	70	94.643	Labrus_bergylta
ENSUAMG00000005984	-	88	92.896	ENSLACG00000011459	SNRPB	75	92.778	Latimeria_chalumnae
ENSUAMG00000005984	-	80	94.048	ENSLOCG00000002687	snrpb	70	95.238	Lepisosteus_oculatus
ENSUAMG00000005984	-	87	95.055	ENSLAFG00000017588	SNRPB	77	94.972	Loxodonta_africana
ENSUAMG00000005984	-	83	100.000	ENSMFAG00000038756	SNRPB	75	100.000	Macaca_fascicularis
ENSUAMG00000005984	-	92	97.927	ENSMMUG00000010050	SNRPB	79	97.927	Macaca_mulatta
ENSUAMG00000005984	-	83	100.000	ENSMNEG00000027954	SNRPB	75	100.000	Macaca_nemestrina
ENSUAMG00000005984	-	83	100.000	ENSMLEG00000022346	SNRPB	75	100.000	Mandrillus_leucophaeus
ENSUAMG00000005984	-	86	91.667	ENSMAMG00000009294	snrpb	67	94.611	Mastacembelus_armatus
ENSUAMG00000005984	-	87	91.713	ENSMZEG00005011856	snrpb	69	94.643	Maylandia_zebra
ENSUAMG00000005984	-	88	99.454	ENSMICG00000016519	SNRPB	78	99.444	Microcebus_murinus
ENSUAMG00000005984	-	87	89.503	ENSMICG00000015983	-	78	90.000	Microcebus_murinus
ENSUAMG00000005984	-	83	99.422	ENSMOCG00000002892	-	75	99.422	Microtus_ochrogaster
ENSUAMG00000005984	-	67	82.014	ENSMOCG00000021362	-	82	59.259	Microtus_ochrogaster
ENSUAMG00000005984	-	87	91.758	ENSMMOG00000013226	snrpb	71	94.611	Mola_mola
ENSUAMG00000005984	-	87	92.265	ENSMALG00000020839	snrpb	56	94.048	Monopterus_albus
ENSUAMG00000005984	-	83	100.000	MGP_CAROLIEiJ_G0024293	Snrpb	75	100.000	Mus_caroli
ENSUAMG00000005984	-	83	100.000	ENSMUSG00000027404	Snrpb	75	100.000	Mus_musculus
ENSUAMG00000005984	-	83	100.000	MGP_PahariEiJ_G0025738	Snrpb	75	100.000	Mus_pahari
ENSUAMG00000005984	-	83	100.000	MGP_SPRETEiJ_G0025213	Snrpb	75	100.000	Mus_spretus
ENSUAMG00000005984	-	83	100.000	ENSMPUG00000009283	SNRPB	75	100.000	Mustela_putorius_furo
ENSUAMG00000005984	-	88	96.175	ENSMLUG00000016951	SNRPB	74	96.111	Myotis_lucifugus
ENSUAMG00000005984	-	83	100.000	ENSNGAG00000012051	Snrpb	75	100.000	Nannospalax_galili
ENSUAMG00000005984	-	87	88.950	ENSNBRG00000006353	snrpb	62	93.293	Neolamprologus_brichardi
ENSUAMG00000005984	-	83	100.000	ENSNLEG00000029067	SNRPB	73	100.000	Nomascus_leucogenys
ENSUAMG00000005984	-	82	98.837	ENSMEUG00000015625	SNRPB	76	98.837	Notamacropus_eugenii
ENSUAMG00000005984	-	83	100.000	ENSODEG00000004305	-	75	100.000	Octodon_degus
ENSUAMG00000005984	-	80	93.452	ENSODEG00000016060	-	70	95.833	Octodon_degus
ENSUAMG00000005984	-	87	91.713	ENSONIG00000000248	snrpb	69	94.643	Oreochromis_niloticus
ENSUAMG00000005984	-	87	71.271	ENSOCUG00000026813	-	70	72.561	Oryctolagus_cuniculus
ENSUAMG00000005984	-	88	99.454	ENSOCUG00000014042	-	75	99.444	Oryctolagus_cuniculus
ENSUAMG00000005984	-	86	93.296	ENSOCUG00000022423	-	86	96.429	Oryctolagus_cuniculus
ENSUAMG00000005984	-	88	95.628	ENSOCUG00000021456	-	75	95.556	Oryctolagus_cuniculus
ENSUAMG00000005984	-	88	97.268	ENSOCUG00000028215	-	75	97.222	Oryctolagus_cuniculus
ENSUAMG00000005984	-	87	92.308	ENSORLG00000021862	snrpb	69	94.643	Oryzias_latipes
ENSUAMG00000005984	-	83	100.000	ENSOGAG00000016149	SNRPB	72	100.000	Otolemur_garnettii
ENSUAMG00000005984	-	88	99.454	ENSOARG00000006740	SNRPB	78	99.444	Ovis_aries
ENSUAMG00000005984	-	83	100.000	ENSPPAG00000036314	SNRPB	75	100.000	Pan_paniscus
ENSUAMG00000005984	-	83	100.000	ENSPPRG00000003233	-	75	100.000	Panthera_pardus
ENSUAMG00000005984	-	82	100.000	ENSPTIG00000007468	SNRPB	74	100.000	Panthera_tigris_altaica
ENSUAMG00000005984	-	83	100.000	ENSPTRG00000013176	SNRPB	75	100.000	Pan_troglodytes
ENSUAMG00000005984	-	83	100.000	ENSPANG00000020362	SNRPB	72	100.000	Papio_anubis
ENSUAMG00000005984	-	80	92.262	ENSPKIG00000002865	snrpb	70	94.048	Paramormyrops_kingsleyae
ENSUAMG00000005984	-	83	96.552	ENSPSIG00000014125	SNRPB	72	96.552	Pelodiscus_sinensis
ENSUAMG00000005984	-	85	90.449	ENSPMGG00000016349	snrpb	69	92.025	Periophthalmus_magnuspinnatus
ENSUAMG00000005984	-	83	100.000	ENSPEMG00000007948	Snrpb	75	100.000	Peromyscus_maniculatus_bairdii
ENSUAMG00000005984	-	82	98.837	ENSPCIG00000004694	SNRPB	71	98.837	Phascolarctos_cinereus
ENSUAMG00000005984	-	71	95.973	ENSPFOG00000011802	snrpb	63	95.973	Poecilia_formosa
ENSUAMG00000005984	-	74	85.806	ENSPLAG00000014130	snrpb	59	95.556	Poecilia_latipinna
ENSUAMG00000005984	-	65	95.556	ENSPREG00000015515	snrpb	62	95.556	Poecilia_reticulata
ENSUAMG00000005984	-	83	100.000	ENSPPYG00000010841	SNRPB	75	100.000	Pongo_abelii
ENSUAMG00000005984	-	83	100.000	ENSPCOG00000013686	SNRPB	75	100.000	Propithecus_coquereli
ENSUAMG00000005984	-	83	98.844	ENSPVAG00000017013	SNRPB	60	98.844	Pteropus_vampyrus
ENSUAMG00000005984	-	87	91.713	ENSPNYG00000014788	snrpb	69	94.643	Pundamilia_nyererei
ENSUAMG00000005984	-	80	92.262	ENSPNAG00000016126	snrpb	70	94.643	Pygocentrus_nattereri
ENSUAMG00000005984	-	83	100.000	ENSRNOG00000006961	Snrpb	75	100.000	Rattus_norvegicus
ENSUAMG00000005984	-	82	100.000	ENSRBIG00000040505	SNRPB	75	100.000	Rhinopithecus_bieti
ENSUAMG00000005984	-	83	100.000	ENSRROG00000036094	SNRPB	75	100.000	Rhinopithecus_roxellana
ENSUAMG00000005984	-	83	100.000	ENSSBOG00000027310	SNRPB	75	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000005984	-	83	99.422	ENSSHAG00000010394	SNRPB	72	99.422	Sarcophilus_harrisii
ENSUAMG00000005984	-	80	92.262	ENSSFOG00015002870	snrpb	70	93.452	Scleropages_formosus
ENSUAMG00000005984	-	88	91.257	ENSSMAG00000006766	snrpb	70	94.048	Scophthalmus_maximus
ENSUAMG00000005984	-	87	91.713	ENSSDUG00000018539	snrpb	69	94.643	Seriola_dumerili
ENSUAMG00000005984	-	87	91.713	ENSSLDG00000022391	snrpb	69	94.643	Seriola_lalandi_dorsalis
ENSUAMG00000005984	-	82	84.884	ENSSARG00000003084	SNRPB	74	84.884	Sorex_araneus
ENSUAMG00000005984	-	83	96.552	ENSSPUG00000015659	SNRPB	73	96.552	Sphenodon_punctatus
ENSUAMG00000005984	-	87	91.713	ENSSPAG00000021992	snrpb	69	94.643	Stegastes_partitus
ENSUAMG00000005984	-	88	77.596	ENSSSCG00000011966	-	89	58.173	Sus_scrofa
ENSUAMG00000005984	-	88	99.454	ENSSSCG00000040857	-	78	99.444	Sus_scrofa
ENSUAMG00000005984	-	81	82.353	ENSTGUG00000005684	SNRPB	58	95.652	Taeniopygia_guttata
ENSUAMG00000005984	-	88	91.803	ENSTRUG00000023094	snrpb	72	94.048	Takifugu_rubripes
ENSUAMG00000005984	-	88	91.803	ENSTNIG00000002991	snrpb	70	94.048	Tetraodon_nigroviridis
ENSUAMG00000005984	-	100	98.157	ENSUMAG00000002123	-	100	98.157	Ursus_maritimus
ENSUAMG00000005984	-	83	99.422	ENSVVUG00000025654	-	72	99.422	Vulpes_vulpes
ENSUAMG00000005984	-	88	80.328	ENSVVUG00000010086	-	71	81.548	Vulpes_vulpes
ENSUAMG00000005984	-	86	95.556	ENSXETG00000027266	snrpb	72	95.294	Xenopus_tropicalis
ENSUAMG00000005984	-	82	78.947	ENSXMAG00000028767	snrpb	58	95.556	Xiphophorus_maculatus