EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000006313 (Gene tree)
Gene ID: -
Gene Symbol: LSM12
Alias: FLJ30656
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 20215 bases
Position: chrLZNR01006987.1:89855-110069
Accession: 26407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000007254	AD	PF09793.9	2.3e-24	1	1
ENSUAMP00000007252	AD	PF09793.9	2.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000008214	LSM12-201	935	-	ENSUAMP00000007252	161 (aa)	-	-
ENSUAMT00000008216	LSM12-202	588	-	ENSUAMP00000007254	195 (aa)	-	UPI0000021A76

Gene Model

Click here to download ENSUAMG00000006313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000006313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000006313	LSM12	100	100.000	ENSG00000161654	LSM12	100	100.000	Homo_sapiens
ENSUAMG00000006313	LSM12	100	86.224	ENSAPOG00000007907	lsm12b	100	86.224	Acanthochromis_polyacanthus
ENSUAMG00000006313	LSM12	100	97.980	ENSAMEG00000018321	LSM12	100	97.980	Ailuropoda_melanoleuca
ENSUAMG00000006313	LSM12	100	84.184	ENSACIG00000008538	lsm12b	100	84.184	Amphilophus_citrinellus
ENSUAMG00000006313	LSM12	100	85.714	ENSAOCG00000021847	lsm12b	88	85.714	Amphiprion_ocellaris
ENSUAMG00000006313	LSM12	100	85.714	ENSAPEG00000002252	lsm12b	100	85.714	Amphiprion_percula
ENSUAMG00000006313	LSM12	100	85.204	ENSATEG00000005705	lsm12b	100	85.204	Anabas_testudineus
ENSUAMG00000006313	LSM12	99	93.782	ENSACAG00000004618	LSM12	99	93.782	Anolis_carolinensis
ENSUAMG00000006313	LSM12	100	100.000	ENSANAG00000029011	LSM12	100	100.000	Aotus_nancymaae
ENSUAMG00000006313	LSM12	100	84.694	ENSACLG00000026332	lsm12b	100	84.694	Astatotilapia_calliptera
ENSUAMG00000006313	LSM12	100	84.694	ENSAMXG00000032952	lsm12b	100	84.694	Astyanax_mexicanus
ENSUAMG00000006313	LSM12	100	79.082	ENSAMXG00000036117	lsm12a	91	79.082	Astyanax_mexicanus
ENSUAMG00000006313	LSM12	100	100.000	ENSBTAG00000016252	LSM12	100	100.000	Bos_taurus
ENSUAMG00000006313	LSM12	100	100.000	ENSCJAG00000048480	LSM12	100	100.000	Callithrix_jacchus
ENSUAMG00000006313	LSM12	100	100.000	ENSCAFG00000014379	LSM12	92	100.000	Canis_familiaris
ENSUAMG00000006313	LSM12	100	100.000	ENSCAFG00020012173	LSM12	100	100.000	Canis_lupus_dingo
ENSUAMG00000006313	LSM12	100	100.000	ENSCHIG00000018175	LSM12	100	100.000	Capra_hircus
ENSUAMG00000006313	LSM12	100	100.000	ENSTSYG00000036361	LSM12	100	100.000	Carlito_syrichta
ENSUAMG00000006313	LSM12	98	98.089	ENSCAPG00000009647	LSM12	86	98.089	Cavia_aperea
ENSUAMG00000006313	LSM12	100	97.949	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSUAMG00000006313	LSM12	100	100.000	ENSCCAG00000032905	LSM12	100	100.000	Cebus_capucinus
ENSUAMG00000006313	LSM12	100	100.000	ENSCATG00000030577	-	100	100.000	Cercocebus_atys
ENSUAMG00000006313	LSM12	100	98.974	ENSCLAG00000015759	LSM12	100	98.974	Chinchilla_lanigera
ENSUAMG00000006313	LSM12	100	99.487	ENSCSAG00000003486	LSM12	100	99.487	Chlorocebus_sabaeus
ENSUAMG00000006313	LSM12	68	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSUAMG00000006313	LSM12	99	93.264	ENSCPBG00000027105	LSM12	99	93.264	Chrysemys_picta_bellii
ENSUAMG00000006313	LSM12	100	100.000	ENSCANG00000043328	LSM12	100	100.000	Colobus_angolensis_palliatus
ENSUAMG00000006313	LSM12	100	100.000	ENSCGRG00001002094	Lsm12	100	100.000	Cricetulus_griseus_chok1gshd
ENSUAMG00000006313	LSM12	96	99.351	ENSCGRG00000004316	Lsm12	95	92.857	Cricetulus_griseus_crigri
ENSUAMG00000006313	LSM12	100	84.694	ENSCSEG00000008434	lsm12b	100	84.694	Cynoglossus_semilaevis
ENSUAMG00000006313	LSM12	100	84.694	ENSCVAG00000008755	lsm12b	100	84.694	Cyprinodon_variegatus
ENSUAMG00000006313	LSM12	100	77.041	ENSDARG00000028848	lsm12a	100	77.041	Danio_rerio
ENSUAMG00000006313	LSM12	100	85.204	ENSDARG00000109510	lsm12b	100	85.204	Danio_rerio
ENSUAMG00000006313	LSM12	100	99.487	ENSDNOG00000002418	LSM12	91	99.487	Dasypus_novemcinctus
ENSUAMG00000006313	LSM12	100	100.000	ENSDORG00000016381	Lsm12	100	100.000	Dipodomys_ordii
ENSUAMG00000006313	LSM12	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSUAMG00000006313	LSM12	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSUAMG00000006313	LSM12	98	85.443	ENSETEG00000011012	-	100	88.000	Echinops_telfairi
ENSUAMG00000006313	LSM12	100	99.487	ENSETEG00000008374	LSM12	100	99.487	Echinops_telfairi
ENSUAMG00000006313	LSM12	84	63.415	ENSEBUG00000016299	lsm12a	92	63.415	Eptatretus_burgeri
ENSUAMG00000006313	LSM12	100	100.000	ENSEASG00005010155	LSM12	100	100.000	Equus_asinus_asinus
ENSUAMG00000006313	LSM12	100	100.000	ENSECAG00000009071	LSM12	100	100.000	Equus_caballus
ENSUAMG00000006313	LSM12	95	98.693	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSUAMG00000006313	LSM12	100	84.184	ENSELUG00000015538	lsm12b	100	79.592	Esox_lucius
ENSUAMG00000006313	LSM12	100	82.143	ENSELUG00000000256	-	100	82.143	Esox_lucius
ENSUAMG00000006313	LSM12	100	100.000	ENSFCAG00000037021	LSM12	100	100.000	Felis_catus
ENSUAMG00000006313	LSM12	92	99.324	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSUAMG00000006313	LSM12	100	83.673	ENSFHEG00000019913	lsm12b	100	83.673	Fundulus_heteroclitus
ENSUAMG00000006313	LSM12	98	81.646	ENSGMOG00000015449	lsm12b	100	84.177	Gadus_morhua
ENSUAMG00000006313	LSM12	95	94.118	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSUAMG00000006313	LSM12	100	84.184	ENSGAFG00000011829	lsm12b	100	84.184	Gambusia_affinis
ENSUAMG00000006313	LSM12	98	82.278	ENSGACG00000003428	lsm12b	100	84.810	Gasterosteus_aculeatus
ENSUAMG00000006313	LSM12	99	94.301	ENSGAGG00000021965	LSM12	99	94.301	Gopherus_agassizii
ENSUAMG00000006313	LSM12	100	100.000	ENSGGOG00000010589	-	100	100.000	Gorilla_gorilla
ENSUAMG00000006313	LSM12	96	85.065	ENSHBUG00000007667	lsm12b	74	85.629	Haplochromis_burtoni
ENSUAMG00000006313	LSM12	100	100.000	ENSHGLG00000011411	LSM12	100	100.000	Heterocephalus_glaber_female
ENSUAMG00000006313	LSM12	100	98.758	ENSHGLG00100000241	LSM12	86	98.758	Heterocephalus_glaber_male
ENSUAMG00000006313	LSM12	100	84.184	ENSHCOG00000002094	lsm12b	100	84.184	Hippocampus_comes
ENSUAMG00000006313	LSM12	99	75.773	ENSIPUG00000008936	lsm12a	99	75.773	Ictalurus_punctatus
ENSUAMG00000006313	LSM12	100	85.204	ENSIPUG00000014800	lsm12	100	85.204	Ictalurus_punctatus
ENSUAMG00000006313	LSM12	100	100.000	ENSSTOG00000007403	LSM12	100	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000006313	LSM12	81	84.906	ENSJJAG00000014652	-	95	84.906	Jaculus_jaculus
ENSUAMG00000006313	LSM12	100	98.974	ENSJJAG00000004364	-	100	98.974	Jaculus_jaculus
ENSUAMG00000006313	LSM12	97	87.895	ENSJJAG00000011793	-	100	87.895	Jaculus_jaculus
ENSUAMG00000006313	LSM12	86	86.310	ENSKMAG00000007704	lsm12b	57	86.310	Kryptolebias_marmoratus
ENSUAMG00000006313	LSM12	100	85.714	ENSLBEG00000027999	lsm12b	100	85.714	Labrus_bergylta
ENSUAMG00000006313	LSM12	99	90.155	ENSLACG00000015981	LSM12	99	90.155	Latimeria_chalumnae
ENSUAMG00000006313	LSM12	100	83.673	ENSLOCG00000013079	lsm12b	99	83.673	Lepisosteus_oculatus
ENSUAMG00000006313	LSM12	100	100.000	ENSLAFG00000005202	LSM12	100	100.000	Loxodonta_africana
ENSUAMG00000006313	LSM12	100	100.000	ENSMFAG00000031376	LSM12	100	100.000	Macaca_fascicularis
ENSUAMG00000006313	LSM12	65	86.207	ENSMMUG00000042106	-	100	86.207	Macaca_mulatta
ENSUAMG00000006313	LSM12	100	100.000	ENSMMUG00000006804	LSM12	100	100.000	Macaca_mulatta
ENSUAMG00000006313	LSM12	65	86.207	ENSMMUG00000038408	-	100	86.207	Macaca_mulatta
ENSUAMG00000006313	LSM12	100	100.000	ENSMNEG00000030594	-	100	100.000	Macaca_nemestrina
ENSUAMG00000006313	LSM12	100	100.000	ENSMLEG00000039934	LSM12	100	100.000	Mandrillus_leucophaeus
ENSUAMG00000006313	LSM12	100	85.204	ENSMAMG00000004279	lsm12b	100	85.204	Mastacembelus_armatus
ENSUAMG00000006313	LSM12	100	84.694	ENSMZEG00005005754	lsm12b	100	84.694	Maylandia_zebra
ENSUAMG00000006313	LSM12	100	99.487	ENSMICG00000037219	LSM12	100	99.487	Microcebus_murinus
ENSUAMG00000006313	LSM12	100	100.000	ENSMOCG00000019878	-	100	100.000	Microtus_ochrogaster
ENSUAMG00000006313	LSM12	100	84.103	ENSMOCG00000017015	-	86	84.103	Microtus_ochrogaster
ENSUAMG00000006313	LSM12	100	85.204	ENSMMOG00000020848	lsm12b	100	85.204	Mola_mola
ENSUAMG00000006313	LSM12	100	85.204	ENSMALG00000007578	lsm12b	100	85.204	Monopterus_albus
ENSUAMG00000006313	LSM12	100	99.487	MGP_CAROLIEiJ_G0017241	Lsm12	100	99.487	Mus_caroli
ENSUAMG00000006313	LSM12	100	100.000	ENSMUSG00000020922	Lsm12	100	100.000	Mus_musculus
ENSUAMG00000006313	LSM12	100	91.981	MGP_PahariEiJ_G0018371	Lsm12	100	100.000	Mus_pahari
ENSUAMG00000006313	LSM12	100	99.487	MGP_SPRETEiJ_G0018084	Lsm12	100	99.487	Mus_spretus
ENSUAMG00000006313	LSM12	100	99.487	ENSMLUG00000006391	LSM12	100	99.487	Myotis_lucifugus
ENSUAMG00000006313	LSM12	94	74.172	ENSNGAG00000015429	-	100	67.327	Nannospalax_galili
ENSUAMG00000006313	LSM12	100	100.000	ENSNGAG00000001870	Lsm12	100	100.000	Nannospalax_galili
ENSUAMG00000006313	LSM12	100	84.694	ENSNBRG00000006266	lsm12b	100	84.694	Neolamprologus_brichardi
ENSUAMG00000006313	LSM12	100	100.000	ENSNLEG00000005580	-	100	100.000	Nomascus_leucogenys
ENSUAMG00000006313	LSM12	85	98.182	ENSMEUG00000007501	-	100	98.182	Notamacropus_eugenii
ENSUAMG00000006313	LSM12	100	100.000	ENSOPRG00000008552	LSM12	100	100.000	Ochotona_princeps
ENSUAMG00000006313	LSM12	100	98.462	ENSODEG00000017998	-	100	98.462	Octodon_degus
ENSUAMG00000006313	LSM12	100	88.718	ENSODEG00000007886	-	74	88.718	Octodon_degus
ENSUAMG00000006313	LSM12	100	84.694	ENSONIG00000007933	lsm12b	100	84.694	Oreochromis_niloticus
ENSUAMG00000006313	LSM12	50	90.123	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSUAMG00000006313	LSM12	99	92.268	ENSOCUG00000024823	-	100	92.268	Oryctolagus_cuniculus
ENSUAMG00000006313	LSM12	99	93.299	ENSOCUG00000027889	-	100	93.299	Oryctolagus_cuniculus
ENSUAMG00000006313	LSM12	99	93.299	ENSOCUG00000021254	-	100	93.299	Oryctolagus_cuniculus
ENSUAMG00000006313	LSM12	100	97.980	ENSOCUG00000008566	-	100	97.980	Oryctolagus_cuniculus
ENSUAMG00000006313	LSM12	100	85.204	ENSORLG00000011310	lsm12b	100	85.204	Oryzias_latipes
ENSUAMG00000006313	LSM12	100	85.204	ENSORLG00020002060	lsm12b	92	85.204	Oryzias_latipes_hni
ENSUAMG00000006313	LSM12	100	85.204	ENSORLG00015001647	lsm12b	92	85.204	Oryzias_latipes_hsok
ENSUAMG00000006313	LSM12	100	85.204	ENSOMEG00000006184	lsm12b	92	85.204	Oryzias_melastigma
ENSUAMG00000006313	LSM12	100	99.487	ENSOGAG00000010489	LSM12	100	99.487	Otolemur_garnettii
ENSUAMG00000006313	LSM12	100	98.137	ENSOARG00000006589	LSM12	100	96.517	Ovis_aries
ENSUAMG00000006313	LSM12	95	100.000	ENSPPAG00000034974	-	92	100.000	Pan_paniscus
ENSUAMG00000006313	LSM12	100	100.000	ENSPPRG00000023420	LSM12	100	100.000	Panthera_pardus
ENSUAMG00000006313	LSM12	73	96.396	ENSPTIG00000014850	-	100	96.396	Panthera_tigris_altaica
ENSUAMG00000006313	LSM12	95	100.000	ENSPTIG00000012704	-	82	100.000	Panthera_tigris_altaica
ENSUAMG00000006313	LSM12	100	100.000	ENSPTRG00000009261	LSM12	100	100.000	Pan_troglodytes
ENSUAMG00000006313	LSM12	100	100.000	ENSPANG00000021315	-	100	100.000	Papio_anubis
ENSUAMG00000006313	LSM12	100	86.224	ENSPKIG00000021058	lsm12b	100	86.224	Paramormyrops_kingsleyae
ENSUAMG00000006313	LSM12	99	76.804	ENSPKIG00000017932	-	99	76.804	Paramormyrops_kingsleyae
ENSUAMG00000006313	LSM12	100	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSUAMG00000006313	LSM12	100	100.000	ENSPEMG00000012199	Lsm12	100	100.000	Peromyscus_maniculatus_bairdii
ENSUAMG00000006313	LSM12	88	66.279	ENSPMAG00000005461	lsm12a	99	66.279	Petromyzon_marinus
ENSUAMG00000006313	LSM12	100	96.923	ENSPCIG00000020244	LSM12	100	96.923	Phascolarctos_cinereus
ENSUAMG00000006313	LSM12	100	83.163	ENSPFOG00000015930	lsm12b	100	83.163	Poecilia_formosa
ENSUAMG00000006313	LSM12	100	83.163	ENSPLAG00000021089	lsm12b	100	83.163	Poecilia_latipinna
ENSUAMG00000006313	LSM12	100	83.163	ENSPMEG00000012961	lsm12b	100	83.163	Poecilia_mexicana
ENSUAMG00000006313	LSM12	98	81.646	ENSPREG00000010236	lsm12b	95	85.380	Poecilia_reticulata
ENSUAMG00000006313	LSM12	100	100.000	ENSPPYG00000008344	LSM12	100	100.000	Pongo_abelii
ENSUAMG00000006313	LSM12	82	99.371	ENSPCAG00000008790	LSM12	100	99.371	Procavia_capensis
ENSUAMG00000006313	LSM12	100	100.000	ENSPCOG00000027951	LSM12	100	100.000	Propithecus_coquereli
ENSUAMG00000006313	LSM12	100	99.487	ENSPVAG00000013706	LSM12	100	99.487	Pteropus_vampyrus
ENSUAMG00000006313	LSM12	100	84.694	ENSPNYG00000003386	lsm12b	100	84.694	Pundamilia_nyererei
ENSUAMG00000006313	LSM12	100	77.041	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSUAMG00000006313	LSM12	100	83.163	ENSPNAG00000004186	lsm12b	100	83.163	Pygocentrus_nattereri
ENSUAMG00000006313	LSM12	100	100.000	ENSRNOG00000020894	Lsm12	100	100.000	Rattus_norvegicus
ENSUAMG00000006313	LSM12	100	100.000	ENSRBIG00000027910	LSM12	100	100.000	Rhinopithecus_bieti
ENSUAMG00000006313	LSM12	100	100.000	ENSRROG00000045530	-	100	100.000	Rhinopithecus_roxellana
ENSUAMG00000006313	LSM12	100	60.513	ENSRROG00000000537	-	80	82.759	Rhinopithecus_roxellana
ENSUAMG00000006313	LSM12	73	32.061	YHR121W	-	68	32.061	Saccharomyces_cerevisiae
ENSUAMG00000006313	LSM12	100	100.000	ENSSBOG00000025310	LSM12	100	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000006313	LSM12	98	94.304	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSUAMG00000006313	LSM12	100	83.163	ENSSFOG00015020392	lsm12a	100	83.163	Scleropages_formosus
ENSUAMG00000006313	LSM12	100	86.224	ENSSFOG00015009612	lsm12	100	86.224	Scleropages_formosus
ENSUAMG00000006313	LSM12	100	85.204	ENSSMAG00000008089	lsm12b	100	85.204	Scophthalmus_maximus
ENSUAMG00000006313	LSM12	100	86.224	ENSSDUG00000012711	lsm12b	100	86.224	Seriola_dumerili
ENSUAMG00000006313	LSM12	100	86.224	ENSSLDG00000007404	lsm12b	100	86.224	Seriola_lalandi_dorsalis
ENSUAMG00000006313	LSM12	95	99.346	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSUAMG00000006313	LSM12	99	94.819	ENSSPUG00000011984	LSM12	99	94.819	Sphenodon_punctatus
ENSUAMG00000006313	LSM12	100	85.714	ENSSPAG00000017058	lsm12b	100	85.714	Stegastes_partitus
ENSUAMG00000006313	LSM12	100	100.000	ENSSSCG00000032394	LSM12	100	100.000	Sus_scrofa
ENSUAMG00000006313	LSM12	100	84.184	ENSTRUG00000007121	lsm12b	100	84.184	Takifugu_rubripes
ENSUAMG00000006313	LSM12	100	84.694	ENSTNIG00000014436	lsm12b	100	84.694	Tetraodon_nigroviridis
ENSUAMG00000006313	LSM12	100	96.410	ENSTBEG00000012392	-	100	96.410	Tupaia_belangeri
ENSUAMG00000006313	LSM12	100	99.487	ENSTBEG00000012523	-	100	99.487	Tupaia_belangeri
ENSUAMG00000006313	LSM12	100	100.000	ENSTTRG00000010433	LSM12	100	100.000	Tursiops_truncatus
ENSUAMG00000006313	LSM12	100	100.000	ENSUMAG00000012987	LSM12	91	100.000	Ursus_maritimus
ENSUAMG00000006313	LSM12	100	94.359	ENSVPAG00000011145	LSM12	100	94.359	Vicugna_pacos
ENSUAMG00000006313	LSM12	100	100.000	ENSVVUG00000017581	LSM12	100	100.000	Vulpes_vulpes
ENSUAMG00000006313	LSM12	91	65.753	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSUAMG00000006313	LSM12	100	84.184	ENSXCOG00000003994	lsm12b	100	84.184	Xiphophorus_couchianus
ENSUAMG00000006313	LSM12	100	84.184	ENSXMAG00000020950	lsm12b	100	84.184	Xiphophorus_maculatus