EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000006476 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 8787 bases
Position: chrLZNR01007020.1:68314-77100
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000007475	CPSF_A	PF03178.15	1.1e-91	1	1
ENSUAMP00000007484	CPSF_A	PF03178.15	2.2e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000008454	CPSF1-201	4272	-	ENSUAMP00000007475	1423 (aa)	-	-
ENSUAMT00000008464	CPSF1-202	4303	-	ENSUAMP00000007484	1422 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000006476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000006476's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000006476	CPSF1	98	96.571	ENSG00000071894	CPSF1	97	96.571	Homo_sapiens
ENSUAMG00000006476	CPSF1	98	78.049	ENSAPOG00000019621	cpsf1	99	78.328	Acanthochromis_polyacanthus
ENSUAMG00000006476	CPSF1	98	97.856	ENSAMEG00000005557	CPSF1	100	97.856	Ailuropoda_melanoleuca
ENSUAMG00000006476	CPSF1	98	78.214	ENSACIG00000006112	cpsf1	97	78.643	Amphilophus_citrinellus
ENSUAMG00000006476	CPSF1	98	79.516	ENSAOCG00000007120	cpsf1	97	79.587	Amphiprion_ocellaris
ENSUAMG00000006476	CPSF1	98	79.602	ENSAPEG00000005755	cpsf1	97	79.986	Amphiprion_percula
ENSUAMG00000006476	CPSF1	97	78.829	ENSATEG00000011097	cpsf1	99	78.512	Anabas_testudineus
ENSUAMG00000006476	CPSF1	91	81.846	ENSACAG00000009655	CPSF1	97	81.846	Anolis_carolinensis
ENSUAMG00000006476	CPSF1	98	96.569	ENSANAG00000036514	CPSF1	97	96.569	Aotus_nancymaae
ENSUAMG00000006476	CPSF1	97	78.843	ENSACLG00000012231	cpsf1	99	78.843	Astatotilapia_calliptera
ENSUAMG00000006476	CPSF1	98	74.140	ENSAMXG00000008485	cpsf1	96	74.427	Astyanax_mexicanus
ENSUAMG00000006476	CPSF1	98	95.432	ENSBTAG00000008355	CPSF1	100	95.461	Bos_taurus
ENSUAMG00000006476	CPSF1	97	32.267	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSUAMG00000006476	CPSF1	98	96.426	ENSCJAG00000021421	CPSF1	97	96.426	Callithrix_jacchus
ENSUAMG00000006476	CPSF1	98	98.641	ENSCAFG00000001600	CPSF1	100	98.641	Canis_familiaris
ENSUAMG00000006476	CPSF1	98	98.498	ENSCAFG00020020821	CPSF1	97	98.498	Canis_lupus_dingo
ENSUAMG00000006476	CPSF1	98	91.738	ENSCHIG00000015833	CPSF1	97	91.738	Capra_hircus
ENSUAMG00000006476	CPSF1	98	96.855	ENSTSYG00000028560	CPSF1	97	96.855	Carlito_syrichta
ENSUAMG00000006476	CPSF1	98	95.429	ENSCAPG00000014921	CPSF1	99	95.429	Cavia_aperea
ENSUAMG00000006476	CPSF1	98	94.853	ENSCPOG00000011448	CPSF1	97	94.853	Cavia_porcellus
ENSUAMG00000006476	CPSF1	98	96.640	ENSCCAG00000037658	CPSF1	97	96.640	Cebus_capucinus
ENSUAMG00000006476	CPSF1	98	96.640	ENSCATG00000037234	CPSF1	97	96.640	Cercocebus_atys
ENSUAMG00000006476	CPSF1	98	96.638	ENSCLAG00000012166	CPSF1	97	96.638	Chinchilla_lanigera
ENSUAMG00000006476	CPSF1	98	96.569	ENSCSAG00000008502	CPSF1	97	96.569	Chlorocebus_sabaeus
ENSUAMG00000006476	CPSF1	97	87.942	ENSCPBG00000018910	CPSF1	93	87.942	Chrysemys_picta_bellii
ENSUAMG00000006476	CPSF1	93	48.063	ENSCING00000000514	-	96	47.988	Ciona_intestinalis
ENSUAMG00000006476	CPSF1	98	47.838	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSUAMG00000006476	CPSF1	98	92.847	ENSCANG00000032760	CPSF1	97	92.847	Colobus_angolensis_palliatus
ENSUAMG00000006476	CPSF1	98	96.280	ENSCGRG00001016344	Cpsf1	97	96.280	Cricetulus_griseus_chok1gshd
ENSUAMG00000006476	CPSF1	98	93.777	ENSCGRG00000003118	Cpsf1	97	93.777	Cricetulus_griseus_crigri
ENSUAMG00000006476	CPSF1	98	77.953	ENSCSEG00000013464	cpsf1	99	77.996	Cynoglossus_semilaevis
ENSUAMG00000006476	CPSF1	86	77.309	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSUAMG00000006476	CPSF1	97	80.187	ENSDARG00000034178	cpsf1	97	79.688	Danio_rerio
ENSUAMG00000006476	CPSF1	65	97.101	ENSDNOG00000043654	CPSF1	89	97.101	Dasypus_novemcinctus
ENSUAMG00000006476	CPSF1	98	96.206	ENSDORG00000006278	Cpsf1	99	96.206	Dipodomys_ordii
ENSUAMG00000006476	CPSF1	97	45.570	FBgn0024698	Cpsf160	96	45.423	Drosophila_melanogaster
ENSUAMG00000006476	CPSF1	78	98.658	ENSETEG00000006022	CPSF1	79	98.658	Echinops_telfairi
ENSUAMG00000006476	CPSF1	98	98.569	ENSEASG00005010774	CPSF1	97	98.569	Equus_asinus_asinus
ENSUAMG00000006476	CPSF1	98	98.569	ENSECAG00000022209	CPSF1	97	98.569	Equus_caballus
ENSUAMG00000006476	CPSF1	97	96.467	ENSEEUG00000000471	CPSF1	96	96.467	Erinaceus_europaeus
ENSUAMG00000006476	CPSF1	98	78.966	ENSELUG00000012271	cpsf1	100	78.729	Esox_lucius
ENSUAMG00000006476	CPSF1	98	96.638	ENSFDAG00000016060	CPSF1	97	96.638	Fukomys_damarensis
ENSUAMG00000006476	CPSF1	98	77.470	ENSFHEG00000016801	cpsf1	97	77.541	Fundulus_heteroclitus
ENSUAMG00000006476	CPSF1	98	78.109	ENSGMOG00000000796	cpsf1	97	78.378	Gadus_morhua
ENSUAMG00000006476	CPSF1	93	83.929	ENSGAFG00000018890	cpsf1	96	83.929	Gambusia_affinis
ENSUAMG00000006476	CPSF1	98	78.910	ENSGACG00000008703	cpsf1	100	76.100	Gasterosteus_aculeatus
ENSUAMG00000006476	CPSF1	98	84.516	ENSGAGG00000004276	CPSF1	98	88.161	Gopherus_agassizii
ENSUAMG00000006476	CPSF1	98	96.781	ENSGGOG00000016185	CPSF1	97	96.781	Gorilla_gorilla
ENSUAMG00000006476	CPSF1	98	79.714	ENSHBUG00000018900	cpsf1	97	79.857	Haplochromis_burtoni
ENSUAMG00000006476	CPSF1	98	96.915	ENSHGLG00000016139	CPSF1	97	96.915	Heterocephalus_glaber_female
ENSUAMG00000006476	CPSF1	98	96.844	ENSHGLG00100009750	CPSF1	97	96.844	Heterocephalus_glaber_male
ENSUAMG00000006476	CPSF1	98	77.442	ENSHCOG00000018509	cpsf1	97	77.583	Hippocampus_comes
ENSUAMG00000006476	CPSF1	97	77.022	ENSIPUG00000011259	cpsf1	97	76.629	Ictalurus_punctatus
ENSUAMG00000006476	CPSF1	98	96.512	ENSSTOG00000009957	CPSF1	99	96.512	Ictidomys_tridecemlineatus
ENSUAMG00000006476	CPSF1	98	96.209	ENSJJAG00000023002	Cpsf1	97	96.209	Jaculus_jaculus
ENSUAMG00000006476	CPSF1	89	85.580	ENSKMAG00000001940	cpsf1	96	85.580	Kryptolebias_marmoratus
ENSUAMG00000006476	CPSF1	98	77.730	ENSLBEG00000003601	cpsf1	97	78.003	Labrus_bergylta
ENSUAMG00000006476	CPSF1	86	81.611	ENSLACG00000000233	CPSF1	97	68.626	Latimeria_chalumnae
ENSUAMG00000006476	CPSF1	98	78.023	ENSLOCG00000008484	cpsf1	97	78.307	Lepisosteus_oculatus
ENSUAMG00000006476	CPSF1	98	96.278	ENSLAFG00000022601	CPSF1	100	96.278	Loxodonta_africana
ENSUAMG00000006476	CPSF1	98	96.497	ENSMFAG00000037013	CPSF1	97	96.497	Macaca_fascicularis
ENSUAMG00000006476	CPSF1	98	96.569	ENSMMUG00000007380	CPSF1	97	96.569	Macaca_mulatta
ENSUAMG00000006476	CPSF1	98	96.779	ENSMNEG00000043564	CPSF1	100	96.779	Macaca_nemestrina
ENSUAMG00000006476	CPSF1	98	96.497	ENSMLEG00000043010	CPSF1	97	96.497	Mandrillus_leucophaeus
ENSUAMG00000006476	CPSF1	97	79.279	ENSMAMG00000003803	cpsf1	99	78.885	Mastacembelus_armatus
ENSUAMG00000006476	CPSF1	97	78.773	ENSMZEG00005001168	cpsf1	97	78.773	Maylandia_zebra
ENSUAMG00000006476	CPSF1	98	96.066	ENSMAUG00000003601	Cpsf1	97	96.066	Mesocricetus_auratus
ENSUAMG00000006476	CPSF1	98	97.282	ENSMICG00000015767	CPSF1	97	97.282	Microcebus_murinus
ENSUAMG00000006476	CPSF1	98	96.352	ENSMOCG00000022758	Cpsf1	97	96.352	Microtus_ochrogaster
ENSUAMG00000006476	CPSF1	98	79.370	ENSMMOG00000021245	cpsf1	96	79.728	Mola_mola
ENSUAMG00000006476	CPSF1	98	93.942	ENSMODG00000010755	CPSF1	97	93.942	Monodelphis_domestica
ENSUAMG00000006476	CPSF1	98	77.669	ENSMALG00000020545	cpsf1	97	78.088	Monopterus_albus
ENSUAMG00000006476	CPSF1	98	96.638	MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.638	Mus_caroli
ENSUAMG00000006476	CPSF1	98	96.567	ENSMUSG00000034022	Cpsf1	97	96.567	Mus_musculus
ENSUAMG00000006476	CPSF1	98	96.495	MGP_PahariEiJ_G0019946	Cpsf1	97	96.495	Mus_pahari
ENSUAMG00000006476	CPSF1	98	96.567	MGP_SPRETEiJ_G0020839	Cpsf1	97	96.567	Mus_spretus
ENSUAMG00000006476	CPSF1	95	97.776	ENSMPUG00000006419	CPSF1	93	97.776	Mustela_putorius_furo
ENSUAMG00000006476	CPSF1	98	96.495	ENSNGAG00000022460	Cpsf1	97	96.495	Nannospalax_galili
ENSUAMG00000006476	CPSF1	97	76.049	ENSNBRG00000000813	cpsf1	96	76.049	Neolamprologus_brichardi
ENSUAMG00000006476	CPSF1	84	84.362	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSUAMG00000006476	CPSF1	83	98.837	ENSMEUG00000014922	CPSF1	85	98.837	Notamacropus_eugenii
ENSUAMG00000006476	CPSF1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSUAMG00000006476	CPSF1	98	96.781	ENSODEG00000013995	CPSF1	97	96.781	Octodon_degus
ENSUAMG00000006476	CPSF1	98	80.143	ENSONIG00000007676	cpsf1	97	80.214	Oreochromis_niloticus
ENSUAMG00000006476	CPSF1	59	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSUAMG00000006476	CPSF1	97	78.313	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSUAMG00000006476	CPSF1	97	78.455	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSUAMG00000006476	CPSF1	97	78.470	ENSORLG00015009979	cpsf1	97	77.926	Oryzias_latipes_hsok
ENSUAMG00000006476	CPSF1	97	78.282	ENSOMEG00000011849	cpsf1	97	77.879	Oryzias_melastigma
ENSUAMG00000006476	CPSF1	98	96.989	ENSOGAG00000000315	CPSF1	97	96.989	Otolemur_garnettii
ENSUAMG00000006476	CPSF1	98	96.783	ENSPPAG00000019280	CPSF1	97	96.783	Pan_paniscus
ENSUAMG00000006476	CPSF1	98	96.783	ENSPTRG00000049288	-	97	96.783	Pan_troglodytes
ENSUAMG00000006476	CPSF1	98	95.084	ENSPTRG00000051253	-	97	95.084	Pan_troglodytes
ENSUAMG00000006476	CPSF1	98	96.636	ENSPANG00000015005	CPSF1	100	96.636	Papio_anubis
ENSUAMG00000006476	CPSF1	97	81.241	ENSPKIG00000002582	cpsf1	100	81.184	Paramormyrops_kingsleyae
ENSUAMG00000006476	CPSF1	98	93.870	ENSPCIG00000009035	CPSF1	97	93.870	Phascolarctos_cinereus
ENSUAMG00000006476	CPSF1	98	76.902	ENSPFOG00000012870	cpsf1	97	76.971	Poecilia_formosa
ENSUAMG00000006476	CPSF1	98	76.709	ENSPREG00000016307	cpsf1	97	76.918	Poecilia_reticulata
ENSUAMG00000006476	CPSF1	98	88.349	ENSPPYG00000018973	CPSF1	97	88.349	Pongo_abelii
ENSUAMG00000006476	CPSF1	92	95.455	ENSPCAG00000011541	CPSF1	94	95.455	Procavia_capensis
ENSUAMG00000006476	CPSF1	98	92.995	ENSPCOG00000020001	CPSF1	97	92.995	Propithecus_coquereli
ENSUAMG00000006476	CPSF1	89	99.429	ENSPVAG00000006761	CPSF1	88	99.429	Pteropus_vampyrus
ENSUAMG00000006476	CPSF1	98	78.647	ENSPNYG00000004906	cpsf1	99	78.984	Pundamilia_nyererei
ENSUAMG00000006476	CPSF1	97	75.648	ENSPNAG00000024395	cpsf1	96	75.648	Pygocentrus_nattereri
ENSUAMG00000006476	CPSF1	98	96.638	ENSRNOG00000030705	Cpsf1	97	96.638	Rattus_norvegicus
ENSUAMG00000006476	CPSF1	98	96.497	ENSRBIG00000044907	CPSF1	97	96.497	Rhinopithecus_bieti
ENSUAMG00000006476	CPSF1	98	96.426	ENSRROG00000044861	CPSF1	97	96.426	Rhinopithecus_roxellana
ENSUAMG00000006476	CPSF1	98	96.779	ENSSBOG00000027177	CPSF1	100	96.779	Saimiri_boliviensis_boliviensis
ENSUAMG00000006476	CPSF1	98	93.799	ENSSHAG00000006500	CPSF1	97	93.799	Sarcophilus_harrisii
ENSUAMG00000006476	CPSF1	96	81.295	ENSSFOG00015004606	cpsf1	100	81.368	Scleropages_formosus
ENSUAMG00000006476	CPSF1	98	78.367	ENSSMAG00000020547	cpsf1	97	78.507	Scophthalmus_maximus
ENSUAMG00000006476	CPSF1	97	79.957	ENSSDUG00000001100	cpsf1	96	80.245	Seriola_dumerili
ENSUAMG00000006476	CPSF1	97	80.087	ENSSLDG00000003619	cpsf1	96	80.375	Seriola_lalandi_dorsalis
ENSUAMG00000006476	CPSF1	87	94.018	ENSSARG00000003643	CPSF1	88	94.018	Sorex_araneus
ENSUAMG00000006476	CPSF1	97	88.150	ENSSPUG00000014396	CPSF1	99	88.150	Sphenodon_punctatus
ENSUAMG00000006476	CPSF1	98	78.103	ENSSPAG00000005349	cpsf1	97	78.522	Stegastes_partitus
ENSUAMG00000006476	CPSF1	98	97.067	ENSSSCG00000005906	CPSF1	97	97.067	Sus_scrofa
ENSUAMG00000006476	CPSF1	97	78.121	ENSTRUG00000013134	cpsf1	99	78.261	Takifugu_rubripes
ENSUAMG00000006476	CPSF1	98	79.022	ENSTNIG00000014027	cpsf1	97	79.093	Tetraodon_nigroviridis
ENSUAMG00000006476	CPSF1	76	92.532	ENSTBEG00000001756	CPSF1	91	92.532	Tupaia_belangeri
ENSUAMG00000006476	CPSF1	88	97.927	ENSTTRG00000001937	CPSF1	87	97.927	Tursiops_truncatus
ENSUAMG00000006476	CPSF1	97	78.788	ENSXCOG00000003608	cpsf1	96	79.004	Xiphophorus_couchianus
ENSUAMG00000006476	CPSF1	97	78.170	ENSXMAG00000005798	cpsf1	96	78.386	Xiphophorus_maculatus