EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000007093 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 35330 bases
Position: chrLZNR01000643.1:21-35350
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000008400	UPF1_Zn_bind	PF09416.10	7.9e-75	1	1
ENSUAMP00000008400	ResIII	PF04851.15	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000009472	UPF1-201	3633	-	ENSUAMP00000008400	1119 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000007093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000007093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000007093	UPF1	100	99.553	ENSG00000005007	UPF1	100	99.553	Homo_sapiens
ENSUAMG00000007093	UPF1	100	92.596	ENSAPOG00000010916	-	100	92.596	Acanthochromis_polyacanthus
ENSUAMG00000007093	UPF1	100	91.370	ENSAPOG00000023773	upf1	100	91.459	Acanthochromis_polyacanthus
ENSUAMG00000007093	UPF1	100	97.617	ENSAMEG00000011474	UPF1	100	97.617	Ailuropoda_melanoleuca
ENSUAMG00000007093	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSUAMG00000007093	UPF1	100	91.200	ENSACIG00000019949	upf1	100	91.548	Amphilophus_citrinellus
ENSUAMG00000007093	UPF1	100	90.885	ENSAOCG00000018519	upf1	100	91.454	Amphiprion_ocellaris
ENSUAMG00000007093	UPF1	100	92.596	ENSAOCG00000006352	-	100	92.596	Amphiprion_ocellaris
ENSUAMG00000007093	UPF1	100	92.596	ENSAPEG00000006292	-	100	92.596	Amphiprion_percula
ENSUAMG00000007093	UPF1	100	90.885	ENSAPEG00000016344	upf1	100	91.454	Amphiprion_percula
ENSUAMG00000007093	UPF1	100	92.685	ENSATEG00000016606	-	100	92.685	Anabas_testudineus
ENSUAMG00000007093	UPF1	100	90.062	ENSATEG00000017867	upf1	100	90.853	Anabas_testudineus
ENSUAMG00000007093	UPF1	93	98.008	ENSAPLG00000009175	UPF1	100	98.008	Anas_platyrhynchos
ENSUAMG00000007093	UPF1	95	95.911	ENSANAG00000024107	UPF1	97	95.911	Aotus_nancymaae
ENSUAMG00000007093	UPF1	100	90.933	ENSACLG00000007181	upf1	100	91.281	Astatotilapia_calliptera
ENSUAMG00000007093	UPF1	100	92.328	ENSACLG00000022630	-	100	92.239	Astatotilapia_calliptera
ENSUAMG00000007093	UPF1	100	93.137	ENSAMXG00000042187	upf1	100	93.583	Astyanax_mexicanus
ENSUAMG00000007093	UPF1	100	98.496	ENSBTAG00000020922	UPF1	100	98.496	Bos_taurus
ENSUAMG00000007093	UPF1	89	50.940	WBGene00004880	smg-2	99	48.075	Caenorhabditis_elegans
ENSUAMG00000007093	UPF1	100	98.584	ENSCJAG00000019627	UPF1	100	98.584	Callithrix_jacchus
ENSUAMG00000007093	UPF1	100	98.938	ENSCAFG00000014578	UPF1	100	98.938	Canis_familiaris
ENSUAMG00000007093	UPF1	100	99.911	ENSCAFG00020012347	UPF1	100	99.911	Canis_lupus_dingo
ENSUAMG00000007093	UPF1	100	99.464	ENSCHIG00000011018	UPF1	100	99.464	Capra_hircus
ENSUAMG00000007093	UPF1	96	96.759	ENSTSYG00000008877	UPF1	99	96.759	Carlito_syrichta
ENSUAMG00000007093	UPF1	93	97.907	ENSCAPG00000005758	UPF1	95	97.907	Cavia_aperea
ENSUAMG00000007093	UPF1	100	95.675	ENSCPOG00000025463	UPF1	100	95.675	Cavia_porcellus
ENSUAMG00000007093	UPF1	100	99.553	ENSCCAG00000032175	UPF1	100	99.553	Cebus_capucinus
ENSUAMG00000007093	UPF1	93	98.479	ENSCATG00000040306	UPF1	98	98.479	Cercocebus_atys
ENSUAMG00000007093	UPF1	96	96.953	ENSCLAG00000004037	UPF1	99	98.478	Chinchilla_lanigera
ENSUAMG00000007093	UPF1	100	99.464	ENSCSAG00000005276	UPF1	100	99.464	Chlorocebus_sabaeus
ENSUAMG00000007093	UPF1	100	96.975	ENSCPBG00000012513	UPF1	100	96.975	Chrysemys_picta_bellii
ENSUAMG00000007093	UPF1	78	78.146	ENSCING00000021399	-	99	78.146	Ciona_intestinalis
ENSUAMG00000007093	UPF1	99	71.820	ENSCSAVG00000006533	-	99	71.908	Ciona_savignyi
ENSUAMG00000007093	UPF1	95	97.572	ENSCANG00000029819	UPF1	99	97.572	Colobus_angolensis_palliatus
ENSUAMG00000007093	UPF1	100	98.481	ENSCGRG00001021067	Upf1	100	98.481	Cricetulus_griseus_chok1gshd
ENSUAMG00000007093	UPF1	94	97.097	ENSCGRG00000013480	Upf1	99	97.097	Cricetulus_griseus_crigri
ENSUAMG00000007093	UPF1	100	92.589	ENSCSEG00000016159	-	100	92.500	Cynoglossus_semilaevis
ENSUAMG00000007093	UPF1	100	86.173	ENSCSEG00000017239	upf1	100	86.262	Cynoglossus_semilaevis
ENSUAMG00000007093	UPF1	100	92.239	ENSCVAG00000010561	upf1	100	92.150	Cyprinodon_variegatus
ENSUAMG00000007093	UPF1	100	92.959	ENSDARG00000016302	upf1	100	93.405	Danio_rerio
ENSUAMG00000007093	UPF1	95	94.585	ENSDORG00000009984	Upf1	95	95.627	Dipodomys_ordii
ENSUAMG00000007093	UPF1	85	70.764	FBgn0030354	Upf1	84	67.273	Drosophila_melanogaster
ENSUAMG00000007093	UPF1	55	84.951	ENSEBUG00000010069	upf1	96	85.113	Eptatretus_burgeri
ENSUAMG00000007093	UPF1	100	99.464	ENSEASG00005006549	UPF1	100	99.464	Equus_asinus_asinus
ENSUAMG00000007093	UPF1	100	99.464	ENSECAG00000010639	UPF1	100	99.464	Equus_caballus
ENSUAMG00000007093	UPF1	100	91.755	ENSELUG00000012916	-	100	91.674	Esox_lucius
ENSUAMG00000007093	UPF1	100	90.328	ENSELUG00000020917	upf1	100	90.594	Esox_lucius
ENSUAMG00000007093	UPF1	100	98.938	ENSFCAG00000009757	UPF1	100	98.938	Felis_catus
ENSUAMG00000007093	UPF1	96	96.849	ENSFALG00000009312	UPF1	99	96.849	Ficedula_albicollis
ENSUAMG00000007093	UPF1	97	95.875	ENSFDAG00000014816	UPF1	99	98.382	Fukomys_damarensis
ENSUAMG00000007093	UPF1	100	88.407	ENSFHEG00000006428	upf1	100	88.407	Fundulus_heteroclitus
ENSUAMG00000007093	UPF1	85	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSUAMG00000007093	UPF1	100	91.078	ENSGMOG00000007541	upf1	100	91.519	Gadus_morhua
ENSUAMG00000007093	UPF1	100	97.855	ENSGALG00000003220	UPF1	100	97.855	Gallus_gallus
ENSUAMG00000007093	UPF1	100	92.143	ENSGAFG00000004831	upf1	100	92.054	Gambusia_affinis
ENSUAMG00000007093	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSUAMG00000007093	UPF1	100	97.321	ENSGAGG00000022217	UPF1	100	97.321	Gopherus_agassizii
ENSUAMG00000007093	UPF1	93	99.712	ENSGGOG00000002608	UPF1	99	99.712	Gorilla_gorilla
ENSUAMG00000007093	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSUAMG00000007093	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSUAMG00000007093	UPF1	100	98.053	ENSHGLG00000010900	UPF1	100	98.053	Heterocephalus_glaber_female
ENSUAMG00000007093	UPF1	96	94.645	ENSHGLG00100005904	UPF1	99	94.645	Heterocephalus_glaber_male
ENSUAMG00000007093	UPF1	100	91.607	ENSHCOG00000008918	upf1	100	94.004	Hippocampus_comes
ENSUAMG00000007093	UPF1	100	93.583	ENSIPUG00000005108	UPF1	100	93.939	Ictalurus_punctatus
ENSUAMG00000007093	UPF1	100	99.374	ENSSTOG00000009196	UPF1	100	99.374	Ictidomys_tridecemlineatus
ENSUAMG00000007093	UPF1	100	97.080	ENSJJAG00000023151	Upf1	100	97.080	Jaculus_jaculus
ENSUAMG00000007093	UPF1	100	92.596	ENSKMAG00000004962	upf1	100	92.507	Kryptolebias_marmoratus
ENSUAMG00000007093	UPF1	100	92.335	ENSLBEG00000027848	-	100	92.335	Labrus_bergylta
ENSUAMG00000007093	UPF1	100	89.427	ENSLBEG00000014862	upf1	100	90.573	Labrus_bergylta
ENSUAMG00000007093	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSUAMG00000007093	UPF1	100	95.089	ENSLOCG00000002072	upf1	100	95.089	Lepisosteus_oculatus
ENSUAMG00000007093	UPF1	100	97.699	ENSLAFG00000014963	UPF1	100	97.699	Loxodonta_africana
ENSUAMG00000007093	UPF1	100	98.584	ENSMFAG00000037748	UPF1	100	98.584	Macaca_fascicularis
ENSUAMG00000007093	UPF1	100	98.584	ENSMMUG00000023286	UPF1	100	98.584	Macaca_mulatta
ENSUAMG00000007093	UPF1	100	98.584	ENSMNEG00000000046	UPF1	100	98.584	Macaca_nemestrina
ENSUAMG00000007093	UPF1	93	98.668	ENSMLEG00000028404	UPF1	99	98.668	Mandrillus_leucophaeus
ENSUAMG00000007093	UPF1	100	89.798	ENSMAMG00000006229	upf1	100	90.765	Mastacembelus_armatus
ENSUAMG00000007093	UPF1	100	91.711	ENSMAMG00000006231	-	100	92.157	Mastacembelus_armatus
ENSUAMG00000007093	UPF1	100	89.895	ENSMZEG00005003489	upf1	100	91.078	Maylandia_zebra
ENSUAMG00000007093	UPF1	100	92.328	ENSMZEG00005016386	-	100	92.239	Maylandia_zebra
ENSUAMG00000007093	UPF1	93	97.624	ENSMGAG00000004745	UPF1	100	97.624	Meleagris_gallopavo
ENSUAMG00000007093	UPF1	95	96.382	ENSMAUG00000011398	Upf1	97	96.382	Mesocricetus_auratus
ENSUAMG00000007093	UPF1	100	99.285	ENSMICG00000001659	UPF1	100	99.285	Microcebus_murinus
ENSUAMG00000007093	UPF1	100	97.434	ENSMOCG00000005699	Upf1	100	97.434	Microtus_ochrogaster
ENSUAMG00000007093	UPF1	93	92.440	ENSMMOG00000007537	-	99	92.536	Mola_mola
ENSUAMG00000007093	UPF1	100	90.617	ENSMMOG00000007881	upf1	100	91.071	Mola_mola
ENSUAMG00000007093	UPF1	100	97.176	ENSMODG00000003689	UPF1	100	97.176	Monodelphis_domestica
ENSUAMG00000007093	UPF1	100	91.385	ENSMALG00000018100	-	100	91.385	Monopterus_albus
ENSUAMG00000007093	UPF1	100	90.885	ENSMALG00000000144	upf1	100	91.153	Monopterus_albus
ENSUAMG00000007093	UPF1	100	98.391	MGP_CAROLIEiJ_G0031142	Upf1	100	98.391	Mus_caroli
ENSUAMG00000007093	UPF1	100	98.391	ENSMUSG00000058301	Upf1	100	98.391	Mus_musculus
ENSUAMG00000007093	UPF1	100	98.391	MGP_PahariEiJ_G0021607	Upf1	100	98.391	Mus_pahari
ENSUAMG00000007093	UPF1	100	98.391	MGP_SPRETEiJ_G0032260	Upf1	100	98.391	Mus_spretus
ENSUAMG00000007093	UPF1	100	99.911	ENSMPUG00000015516	UPF1	100	99.911	Mustela_putorius_furo
ENSUAMG00000007093	UPF1	99	99.462	ENSMLUG00000012122	UPF1	99	99.462	Myotis_lucifugus
ENSUAMG00000007093	UPF1	100	97.434	ENSNGAG00000024107	Upf1	100	97.434	Nannospalax_galili
ENSUAMG00000007093	UPF1	100	88.985	ENSNBRG00000022069	-	100	93.975	Neolamprologus_brichardi
ENSUAMG00000007093	UPF1	100	89.244	ENSNBRG00000000670	upf1	100	89.591	Neolamprologus_brichardi
ENSUAMG00000007093	UPF1	93	92.864	ENSNLEG00000006062	UPF1	99	92.864	Nomascus_leucogenys
ENSUAMG00000007093	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSUAMG00000007093	UPF1	93	91.635	ENSOPRG00000014018	UPF1	99	91.635	Ochotona_princeps
ENSUAMG00000007093	UPF1	100	96.637	ENSODEG00000012426	UPF1	100	96.637	Octodon_degus
ENSUAMG00000007093	UPF1	100	92.417	ENSONIG00000012729	-	100	92.328	Oreochromis_niloticus
ENSUAMG00000007093	UPF1	100	90.158	ENSONIG00000010452	upf1	100	91.343	Oreochromis_niloticus
ENSUAMG00000007093	UPF1	100	96.378	ENSOANG00000004568	UPF1	100	96.378	Ornithorhynchus_anatinus
ENSUAMG00000007093	UPF1	100	92.507	ENSORLG00000008453	upf1	100	92.507	Oryzias_latipes
ENSUAMG00000007093	UPF1	100	92.424	ENSORLG00020014758	upf1	100	92.424	Oryzias_latipes_hni
ENSUAMG00000007093	UPF1	100	92.424	ENSORLG00015010165	upf1	100	92.424	Oryzias_latipes_hsok
ENSUAMG00000007093	UPF1	100	92.596	ENSOMEG00000003665	upf1	100	92.507	Oryzias_melastigma
ENSUAMG00000007093	UPF1	100	99.643	ENSOGAG00000012866	UPF1	100	99.643	Otolemur_garnettii
ENSUAMG00000007093	UPF1	96	96.504	ENSOARG00000010739	UPF1	100	96.504	Ovis_aries
ENSUAMG00000007093	UPF1	95	97.572	ENSPPAG00000043884	UPF1	97	97.572	Pan_paniscus
ENSUAMG00000007093	UPF1	100	98.938	ENSPPRG00000023470	UPF1	100	98.938	Panthera_pardus
ENSUAMG00000007093	UPF1	93	97.793	ENSPTIG00000010159	UPF1	99	97.793	Panthera_tigris_altaica
ENSUAMG00000007093	UPF1	100	98.584	ENSPTRG00000010721	UPF1	100	98.584	Pan_troglodytes
ENSUAMG00000007093	UPF1	100	98.584	ENSPANG00000008847	UPF1	100	98.584	Papio_anubis
ENSUAMG00000007093	UPF1	91	94.829	ENSPKIG00000006069	upf1	99	92.344	Paramormyrops_kingsleyae
ENSUAMG00000007093	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSUAMG00000007093	UPF1	100	89.235	ENSPMGG00000017327	upf1	100	89.343	Periophthalmus_magnuspinnatus
ENSUAMG00000007093	UPF1	100	97.522	ENSPEMG00000001085	Upf1	100	97.522	Peromyscus_maniculatus_bairdii
ENSUAMG00000007093	UPF1	100	86.879	ENSPMAG00000001206	upf1	100	86.613	Petromyzon_marinus
ENSUAMG00000007093	UPF1	100	98.660	ENSPCIG00000006156	UPF1	100	98.660	Phascolarctos_cinereus
ENSUAMG00000007093	UPF1	100	89.381	ENSPLAG00000018155	-	100	89.292	Poecilia_latipinna
ENSUAMG00000007093	UPF1	100	92.232	ENSPLAG00000016232	-	100	92.143	Poecilia_latipinna
ENSUAMG00000007093	UPF1	100	89.929	ENSPMEG00000011443	-	100	89.840	Poecilia_mexicana
ENSUAMG00000007093	UPF1	100	92.150	ENSPMEG00000016319	-	100	92.061	Poecilia_mexicana
ENSUAMG00000007093	UPF1	100	92.054	ENSPREG00000011247	-	100	91.964	Poecilia_reticulata
ENSUAMG00000007093	UPF1	100	89.823	ENSPREG00000009940	upf1	100	89.823	Poecilia_reticulata
ENSUAMG00000007093	UPF1	100	93.628	ENSPPYG00000009752	UPF1	100	93.628	Pongo_abelii
ENSUAMG00000007093	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSUAMG00000007093	UPF1	100	98.496	ENSPCOG00000023813	UPF1	100	98.496	Propithecus_coquereli
ENSUAMG00000007093	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSUAMG00000007093	UPF1	100	92.328	ENSPNYG00000016731	-	100	92.239	Pundamilia_nyererei
ENSUAMG00000007093	UPF1	100	89.895	ENSPNYG00000003694	upf1	100	91.078	Pundamilia_nyererei
ENSUAMG00000007093	UPF1	100	93.137	ENSPNAG00000025614	upf1	100	93.583	Pygocentrus_nattereri
ENSUAMG00000007093	UPF1	100	98.391	ENSRNOG00000020134	Upf1	100	98.391	Rattus_norvegicus
ENSUAMG00000007093	UPF1	95	95.238	ENSRBIG00000013894	UPF1	98	99.671	Rhinopithecus_bieti
ENSUAMG00000007093	UPF1	95	97.572	ENSRROG00000040935	UPF1	98	99.671	Rhinopithecus_roxellana
ENSUAMG00000007093	UPF1	71	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSUAMG00000007093	UPF1	96	96.409	ENSSBOG00000023632	UPF1	98	96.409	Saimiri_boliviensis_boliviensis
ENSUAMG00000007093	UPF1	93	97.911	ENSSHAG00000010499	UPF1	100	97.911	Sarcophilus_harrisii
ENSUAMG00000007093	UPF1	100	95.004	ENSSFOG00015021095	upf1	99	97.315	Scleropages_formosus
ENSUAMG00000007093	UPF1	100	89.075	ENSSMAG00000005055	upf1	100	89.877	Scophthalmus_maximus
ENSUAMG00000007093	UPF1	100	92.424	ENSSMAG00000021018	-	100	92.424	Scophthalmus_maximus
ENSUAMG00000007093	UPF1	100	92.692	ENSSDUG00000009629	-	100	92.692	Seriola_dumerili
ENSUAMG00000007093	UPF1	100	90.062	ENSSDUG00000013320	upf1	100	91.029	Seriola_dumerili
ENSUAMG00000007093	UPF1	100	92.692	ENSSLDG00000006878	-	100	92.692	Seriola_lalandi_dorsalis
ENSUAMG00000007093	UPF1	100	90.861	ENSSLDG00000020868	upf1	100	91.320	Seriola_lalandi_dorsalis
ENSUAMG00000007093	UPF1	100	97.140	ENSSPUG00000010538	UPF1	100	97.140	Sphenodon_punctatus
ENSUAMG00000007093	UPF1	100	89.375	ENSSPAG00000000003	upf1	100	89.314	Stegastes_partitus
ENSUAMG00000007093	UPF1	100	92.679	ENSSPAG00000011521	-	100	92.589	Stegastes_partitus
ENSUAMG00000007093	UPF1	100	99.374	ENSSSCG00000039301	UPF1	100	99.374	Sus_scrofa
ENSUAMG00000007093	UPF1	83	89.597	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSUAMG00000007093	UPF1	100	90.527	ENSTRUG00000000150	upf1	100	90.527	Takifugu_rubripes
ENSUAMG00000007093	UPF1	100	91.518	ENSTRUG00000005131	-	100	91.518	Takifugu_rubripes
ENSUAMG00000007093	UPF1	100	95.532	ENSTTRG00000011544	UPF1	100	95.532	Tursiops_truncatus
ENSUAMG00000007093	UPF1	95	98.775	ENSUMAG00000006652	UPF1	99	100.000	Ursus_maritimus
ENSUAMG00000007093	UPF1	100	99.911	ENSVVUG00000007797	UPF1	100	99.911	Vulpes_vulpes
ENSUAMG00000007093	UPF1	100	82.555	ENSXETG00000013602	upf1	100	82.555	Xenopus_tropicalis
ENSUAMG00000007093	UPF1	92	94.762	ENSXCOG00000005764	-	100	94.762	Xiphophorus_couchianus
ENSUAMG00000007093	UPF1	97	89.751	ENSXCOG00000015275	-	96	89.658	Xiphophorus_couchianus
ENSUAMG00000007093	UPF1	100	90.000	ENSXMAG00000001703	-	100	89.911	Xiphophorus_maculatus
ENSUAMG00000007093	UPF1	100	91.971	ENSXMAG00000002540	-	100	91.882	Xiphophorus_maculatus