EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSUAMG00000007535 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Ursus_americanus
Status
putative
Strand
Minus strand
Length
43314 bases
Position
chrLZNR01001946.1:119087-162400
Accession
2326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUAMP00000009003CPSF73-100_CPF11718.81e-5111
ENSUAMP00000009003Beta-CaspPF10996.86e-3411
ENSUAMP00000009003Lactamase_BPF00753.271.3e-1811
ENSUAMP00000009003RMMBLPF07521.122e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUAMT00000010134CPSF3-2012298-ENSUAMP00000009003696 (aa)--
Gene Model
Click here to download ENSUAMG00000007535's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000007535's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSUAMG00000007535CPSF37038.340ENSUAMG00000012804INTS118238.340
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUAMG00000007535CPSF39896.334ENSG00000119203CPSF3100100.000Homo_sapiens
ENSUAMG00000007535CPSF37296.994ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSUAMG00000007535CPSF39585.714ENSAPOG00000022087cpsf39685.714Acanthochromis_polyacanthus
ENSUAMG00000007535CPSF39896.921ENSAMEG00000008493CPSF39996.921Ailuropoda_melanoleuca
ENSUAMG00000007535CPSF38787.294ENSACIG00000023663CPSF39587.294Amphilophus_citrinellus
ENSUAMG00000007535CPSF38683.940ENSACIG00000009846cpsf39583.940Amphilophus_citrinellus
ENSUAMG00000007535CPSF39585.714ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSUAMG00000007535CPSF39488.872ENSAOCG00000010077CPSF39588.872Amphiprion_ocellaris
ENSUAMG00000007535CPSF39488.872ENSAPEG00000021167CPSF39689.506Amphiprion_percula
ENSUAMG00000007535CPSF39585.866ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSUAMG00000007535CPSF39585.866ENSATEG00000003959cpsf39685.866Anabas_testudineus
ENSUAMG00000007535CPSF39483.915ENSATEG00000014525CPSF39583.915Anabas_testudineus
ENSUAMG00000007535CPSF39396.118ENSAPLG00000006941CPSF39496.118Anas_platyrhynchos
ENSUAMG00000007535CPSF38892.659ENSACAG00000001759CPSF39692.659Anolis_carolinensis
ENSUAMG00000007535CPSF39889.736ENSANAG00000031254CPSF39990.090Aotus_nancymaae
ENSUAMG00000007535CPSF38787.129ENSACLG00000018846CPSF39587.129Astatotilapia_calliptera
ENSUAMG00000007535CPSF39287.051ENSACLG00000014484cpsf39687.051Astatotilapia_calliptera
ENSUAMG00000007535CPSF39488.991ENSAMXG00000004786cpsf39588.991Astyanax_mexicanus
ENSUAMG00000007535CPSF39896.774ENSBTAG00000019735CPSF39996.774Bos_taurus
ENSUAMG00000007535CPSF38959.213WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSUAMG00000007535CPSF39896.334ENSCJAG00000006276CPSF39996.334Callithrix_jacchus
ENSUAMG00000007535CPSF394100.000ENSCAFG00000003375CPSF392100.000Canis_familiaris
ENSUAMG00000007535CPSF389100.000ENSCAFG00020026799CPSF3100100.000Canis_lupus_dingo
ENSUAMG00000007535CPSF39896.774ENSCHIG00000013973CPSF39996.774Capra_hircus
ENSUAMG00000007535CPSF39896.334ENSTSYG00000002967CPSF39996.334Carlito_syrichta
ENSUAMG00000007535CPSF39297.969ENSCAPG00000013851CPSF39697.969Cavia_aperea
ENSUAMG00000007535CPSF39498.021ENSCPOG00000011299CPSF39698.021Cavia_porcellus
ENSUAMG00000007535CPSF39896.188ENSCCAG00000036730CPSF39996.188Cebus_capucinus
ENSUAMG00000007535CPSF39893.704ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSUAMG00000007535CPSF39497.869ENSCLAG00000002727CPSF39697.869Chinchilla_lanigera
ENSUAMG00000007535CPSF39888.563ENSCSAG00000007125CPSF39988.563Chlorocebus_sabaeus
ENSUAMG00000007535CPSF375100.000ENSCHOG00000000180CPSF37675.595Choloepus_hoffmanni
ENSUAMG00000007535CPSF39496.489ENSCPBG00000014074CPSF39596.489Chrysemys_picta_bellii
ENSUAMG00000007535CPSF39469.406ENSCING00000007214-9469.406Ciona_intestinalis
ENSUAMG00000007535CPSF39485.693ENSCANG00000034435CPSF39685.693Colobus_angolensis_palliatus
ENSUAMG00000007535CPSF39499.239ENSCGRG00001013134Cpsf39699.239Cricetulus_griseus_chok1gshd
ENSUAMG00000007535CPSF39499.239ENSCGRG00000018319Cpsf39699.239Cricetulus_griseus_crigri
ENSUAMG00000007535CPSF39487.805ENSCSEG00000002021CPSF39687.621Cynoglossus_semilaevis
ENSUAMG00000007535CPSF39489.160ENSCVAG00000015067CPSF39589.160Cyprinodon_variegatus
ENSUAMG00000007535CPSF39490.061ENSDARG00000027649cpsf39590.061Danio_rerio
ENSUAMG00000007535CPSF39498.024ENSDNOG00000008940CPSF39298.024Dasypus_novemcinctus
ENSUAMG00000007535CPSF39499.078ENSDORG00000014263Cpsf310099.078Dipodomys_ordii
ENSUAMG00000007535CPSF39468.798FBgn0261065Cpsf739568.798Drosophila_melanogaster
ENSUAMG00000007535CPSF39485.868ENSETEG00000003893CPSF310085.868Echinops_telfairi
ENSUAMG00000007535CPSF39382.335ENSEBUG00000009018cpsf39381.297Eptatretus_burgeri
ENSUAMG00000007535CPSF39896.921ENSEASG00005003970CPSF39996.921Equus_asinus_asinus
ENSUAMG00000007535CPSF39896.921ENSECAG00000019911CPSF39899.168Equus_caballus
ENSUAMG00000007535CPSF39483.409ENSEEUG00000015422CPSF39683.409Erinaceus_europaeus
ENSUAMG00000007535CPSF39488.702ENSELUG00000013775cpsf39588.702Esox_lucius
ENSUAMG00000007535CPSF39896.774ENSFCAG00000007852CPSF39996.774Felis_catus
ENSUAMG00000007535CPSF38995.961ENSFALG00000006572CPSF39695.961Ficedula_albicollis
ENSUAMG00000007535CPSF39497.565ENSFDAG00000006317CPSF39597.565Fukomys_damarensis
ENSUAMG00000007535CPSF39485.954ENSFHEG00000014774cpsf39585.954Fundulus_heteroclitus
ENSUAMG00000007535CPSF35865.526ENSFHEG00000012186CPSF39965.526Fundulus_heteroclitus
ENSUAMG00000007535CPSF39487.615ENSGMOG00000003157cpsf39587.615Gadus_morhua
ENSUAMG00000007535CPSF39495.406ENSGALG00000016424CPSF39595.406Gallus_gallus
ENSUAMG00000007535CPSF38683.775ENSGAFG00000019449cpsf39583.775Gambusia_affinis
ENSUAMG00000007535CPSF39489.160ENSGAFG00000008016CPSF39589.160Gambusia_affinis
ENSUAMG00000007535CPSF36394.785ENSGAGG00000025583CPSF38894.785Gopherus_agassizii
ENSUAMG00000007535CPSF39894.118ENSGGOG00000001757CPSF39996.209Gorilla_gorilla
ENSUAMG00000007535CPSF39486.910ENSHBUG00000001188cpsf39686.910Haplochromis_burtoni
ENSUAMG00000007535CPSF35582.415ENSHBUG00000014332CPSF39482.415Haplochromis_burtoni
ENSUAMG00000007535CPSF39894.143ENSHGLG00000000666CPSF39994.143Heterocephalus_glaber_female
ENSUAMG00000007535CPSF39894.143ENSHGLG00100007765CPSF39994.143Heterocephalus_glaber_male
ENSUAMG00000007535CPSF39885.022ENSHCOG00000015957CPSF39785.022Hippocampus_comes
ENSUAMG00000007535CPSF39585.498ENSHCOG00000007251cpsf39685.498Hippocampus_comes
ENSUAMG00000007535CPSF39487.768ENSIPUG00000023488cpsf39587.768Ictalurus_punctatus
ENSUAMG00000007535CPSF39896.334ENSSTOG00000004476CPSF39996.334Ictidomys_tridecemlineatus
ENSUAMG00000007535CPSF39895.308ENSJJAG00000023415Cpsf39995.308Jaculus_jaculus
ENSUAMG00000007535CPSF39485.802ENSKMAG00000002806cpsf39585.802Kryptolebias_marmoratus
ENSUAMG00000007535CPSF39488.262ENSKMAG00000007317CPSF39588.262Kryptolebias_marmoratus
ENSUAMG00000007535CPSF39389.352ENSLBEG00000013492CPSF39889.352Labrus_bergylta
ENSUAMG00000007535CPSF38586.824ENSLBEG00000020569cpsf38686.824Labrus_bergylta
ENSUAMG00000007535CPSF35480.161ENSLBEG00000015018-9980.161Labrus_bergylta
ENSUAMG00000007535CPSF39484.404ENSLACG00000008308CPSF39584.404Latimeria_chalumnae
ENSUAMG00000007535CPSF39489.787ENSLOCG00000016823cpsf39589.787Lepisosteus_oculatus
ENSUAMG00000007535CPSF39794.838ENSLAFG00000009467CPSF39994.838Loxodonta_africana
ENSUAMG00000007535CPSF39896.334ENSMFAG00000001339CPSF39996.334Macaca_fascicularis
ENSUAMG00000007535CPSF39396.124ENSMMUG00000018038CPSF39996.124Macaca_mulatta
ENSUAMG00000007535CPSF39883.578ENSMNEG00000039447CPSF39983.578Macaca_nemestrina
ENSUAMG00000007535CPSF39896.481ENSMLEG00000026825CPSF39996.481Mandrillus_leucophaeus
ENSUAMG00000007535CPSF38786.020ENSMAMG00000008835CPSF39586.020Mastacembelus_armatus
ENSUAMG00000007535CPSF39586.170ENSMAMG00000003076cpsf39686.170Mastacembelus_armatus
ENSUAMG00000007535CPSF39486.910ENSMZEG00005014358cpsf39686.910Maylandia_zebra
ENSUAMG00000007535CPSF39489.329ENSMZEG00005006258CPSF39589.329Maylandia_zebra
ENSUAMG00000007535CPSF39295.462ENSMGAG00000013995CPSF39695.462Meleagris_gallopavo
ENSUAMG00000007535CPSF35491.979ENSMAUG00000000166Cpsf39991.979Mesocricetus_auratus
ENSUAMG00000007535CPSF39891.056ENSMICG00000002363CPSF39991.056Microcebus_murinus
ENSUAMG00000007535CPSF38999.191ENSMOCG00000020067Cpsf39599.191Microtus_ochrogaster
ENSUAMG00000007535CPSF39082.372ENSMMOG00000018212CPSF39582.372Mola_mola
ENSUAMG00000007535CPSF36877.857ENSMMOG00000011923CPSF37977.857Mola_mola
ENSUAMG00000007535CPSF39893.324ENSMODG00000014703CPSF39993.324Monodelphis_domestica
ENSUAMG00000007535CPSF39586.364ENSMALG00000016416cpsf39686.364Monopterus_albus
ENSUAMG00000007535CPSF38487.184ENSMALG00000011474CPSF39687.184Monopterus_albus
ENSUAMG00000007535CPSF39895.748MGP_CAROLIEiJ_G0017640Cpsf39995.748Mus_caroli
ENSUAMG00000007535CPSF39895.748ENSMUSG00000054309Cpsf396100.000Mus_musculus
ENSUAMG00000007535CPSF39895.601MGP_PahariEiJ_G0029397Cpsf39995.601Mus_pahari
ENSUAMG00000007535CPSF39895.748MGP_SPRETEiJ_G0018481Cpsf39995.748Mus_spretus
ENSUAMG00000007535CPSF39896.628ENSMPUG00000013213CPSF39996.628Mustela_putorius_furo
ENSUAMG00000007535CPSF39498.784ENSMLUG00000010636CPSF39698.784Myotis_lucifugus
ENSUAMG00000007535CPSF39895.894ENSNGAG00000019836Cpsf39995.894Nannospalax_galili
ENSUAMG00000007535CPSF38787.129ENSNBRG00000010525CPSF39587.129Neolamprologus_brichardi
ENSUAMG00000007535CPSF39486.454ENSNBRG00000004770cpsf39686.454Neolamprologus_brichardi
ENSUAMG00000007535CPSF39896.334ENSNLEG00000013359CPSF39996.334Nomascus_leucogenys
ENSUAMG00000007535CPSF38967.476ENSMEUG00000013117-9962.610Notamacropus_eugenii
ENSUAMG00000007535CPSF39887.243ENSOPRG00000008902CPSF39987.243Ochotona_princeps
ENSUAMG00000007535CPSF39497.412ENSODEG00000003129CPSF39697.412Octodon_degus
ENSUAMG00000007535CPSF39486.910ENSONIG00000018812cpsf39686.910Oreochromis_niloticus
ENSUAMG00000007535CPSF37797.020ENSOANG00000008577CPSF39597.020Ornithorhynchus_anatinus
ENSUAMG00000007535CPSF39896.334ENSOCUG00000003728CPSF39996.334Oryctolagus_cuniculus
ENSUAMG00000007535CPSF39484.627ENSORLG00000018854cpsf39684.627Oryzias_latipes
ENSUAMG00000007535CPSF39484.475ENSORLG00020013331cpsf39684.475Oryzias_latipes_hni
ENSUAMG00000007535CPSF39484.627ENSORLG00015011017cpsf39684.627Oryzias_latipes_hsok
ENSUAMG00000007535CPSF39584.091ENSOMEG00000010647cpsf39284.091Oryzias_melastigma
ENSUAMG00000007535CPSF39886.364ENSOGAG00000001680CPSF39986.364Otolemur_garnettii
ENSUAMG00000007535CPSF39896.774ENSOARG00000015073CPSF39996.774Ovis_aries
ENSUAMG00000007535CPSF39896.481ENSPPAG00000042457CPSF39996.481Pan_paniscus
ENSUAMG00000007535CPSF39896.774ENSPPRG00000016790CPSF39996.774Panthera_pardus
ENSUAMG00000007535CPSF39796.755ENSPTIG00000003920CPSF39996.755Panthera_tigris_altaica
ENSUAMG00000007535CPSF39896.481ENSPTRG00000011638CPSF39996.481Pan_troglodytes
ENSUAMG00000007535CPSF39896.188ENSPANG00000016798CPSF39996.188Papio_anubis
ENSUAMG00000007535CPSF39490.229ENSPKIG00000023646cpsf39690.000Paramormyrops_kingsleyae
ENSUAMG00000007535CPSF39891.618ENSPSIG00000016144CPSF39991.618Pelodiscus_sinensis
ENSUAMG00000007535CPSF35480.211ENSPMGG00000015311CPSF39380.211Periophthalmus_magnuspinnatus
ENSUAMG00000007535CPSF38185.340ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSUAMG00000007535CPSF39895.601ENSPEMG00000017668Cpsf39995.601Peromyscus_maniculatus_bairdii
ENSUAMG00000007535CPSF37790.317ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSUAMG00000007535CPSF39694.887ENSPCIG00000009823CPSF39697.969Phascolarctos_cinereus
ENSUAMG00000007535CPSF39488.855ENSPFOG00000010418-9588.855Poecilia_formosa
ENSUAMG00000007535CPSF39485.933ENSPFOG00000015922cpsf39585.933Poecilia_formosa
ENSUAMG00000007535CPSF35877.970ENSPLAG00000021300-9977.970Poecilia_latipinna
ENSUAMG00000007535CPSF39485.933ENSPLAG00000000882cpsf39585.933Poecilia_latipinna
ENSUAMG00000007535CPSF39486.086ENSPMEG00000018309cpsf39586.086Poecilia_mexicana
ENSUAMG00000007535CPSF38683.694ENSPREG00000014875cpsf39583.694Poecilia_reticulata
ENSUAMG00000007535CPSF39483.664ENSPREG00000004482CPSF39483.664Poecilia_reticulata
ENSUAMG00000007535CPSF39891.935ENSPPYG00000012666CPSF39991.935Pongo_abelii
ENSUAMG00000007535CPSF39464.209ENSPCAG00000015042CPSF310064.209Procavia_capensis
ENSUAMG00000007535CPSF38692.199ENSPCOG00000023016CPSF39792.199Propithecus_coquereli
ENSUAMG00000007535CPSF39896.481ENSPVAG00000005324CPSF39996.481Pteropus_vampyrus
ENSUAMG00000007535CPSF37891.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSUAMG00000007535CPSF39486.910ENSPNYG00000004405cpsf39686.910Pundamilia_nyererei
ENSUAMG00000007535CPSF39487.957ENSPNAG00000023060cpsf39587.957Pygocentrus_nattereri
ENSUAMG00000007535CPSF39895.748ENSRNOG00000052418Cpsf39995.748Rattus_norvegicus
ENSUAMG00000007535CPSF39890.469ENSRBIG00000041615CPSF39991.628Rhinopithecus_bieti
ENSUAMG00000007535CPSF39896.481ENSRROG00000033792CPSF39996.481Rhinopithecus_roxellana
ENSUAMG00000007535CPSF38343.531YLR277CYSH18443.683Saccharomyces_cerevisiae
ENSUAMG00000007535CPSF39890.116ENSSBOG00000027263CPSF39990.116Saimiri_boliviensis_boliviensis
ENSUAMG00000007535CPSF39895.015ENSSHAG00000007024CPSF39995.015Sarcophilus_harrisii
ENSUAMG00000007535CPSF39489.939ENSSFOG00015002108cpsf39689.638Scleropages_formosus
ENSUAMG00000007535CPSF39387.692ENSSMAG00000020534CPSF39687.692Scophthalmus_maximus
ENSUAMG00000007535CPSF39586.212ENSSDUG00000002828cpsf39486.212Seriola_dumerili
ENSUAMG00000007535CPSF39489.024ENSSDUG00000018498CPSF39589.024Seriola_dumerili
ENSUAMG00000007535CPSF39586.061ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSUAMG00000007535CPSF39489.024ENSSLDG00000005234CPSF39589.024Seriola_lalandi_dorsalis
ENSUAMG00000007535CPSF39878.446ENSSARG00000005186CPSF39978.446Sorex_araneus
ENSUAMG00000007535CPSF39293.468ENSSPUG00000015525CPSF39393.468Sphenodon_punctatus
ENSUAMG00000007535CPSF39486.412ENSSPAG00000018579cpsf39586.412Stegastes_partitus
ENSUAMG00000007535CPSF39488.720ENSSPAG00000002906CPSF39588.720Stegastes_partitus
ENSUAMG00000007535CPSF39896.774ENSSSCG00000020799CPSF39996.774Sus_scrofa
ENSUAMG00000007535CPSF39496.172ENSTGUG00000013016CPSF39596.172Taeniopygia_guttata
ENSUAMG00000007535CPSF35473.867ENSTRUG00000013905CPSF39173.867Takifugu_rubripes
ENSUAMG00000007535CPSF39485.976ENSTRUG00000007030cpsf39485.976Takifugu_rubripes
ENSUAMG00000007535CPSF37493.699ENSTBEG00000002707CPSF37593.699Tupaia_belangeri
ENSUAMG00000007535CPSF38688.043ENSTTRG00000000861CPSF38788.043Tursiops_truncatus
ENSUAMG00000007535CPSF39396.744ENSUMAG00000003676CPSF39996.744Ursus_maritimus
ENSUAMG00000007535CPSF39196.057ENSVPAG00000008041CPSF310096.057Vicugna_pacos
ENSUAMG00000007535CPSF39896.921ENSVVUG00000002194CPSF39996.921Vulpes_vulpes
ENSUAMG00000007535CPSF39490.854ENSXETG00000008263cpsf39590.854Xenopus_tropicalis
ENSUAMG00000007535CPSF39485.845ENSXCOG00000019695cpsf39685.845Xiphophorus_couchianus
ENSUAMG00000007535CPSF35080.692ENSXCOG00000000957-8776.280Xiphophorus_couchianus
ENSUAMG00000007535CPSF39489.008ENSXMAG00000027291CPSF39589.008Xiphophorus_maculatus
ENSUAMG00000007535CPSF39485.540ENSXMAG00000009784cpsf39785.185Xiphophorus_maculatus

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