EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000008051 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 10536 bases
Position: chrLZNR01003057.1:218713-229248
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000009705	zf-CCCH	PF00642.24	3.2e-20	1	2
ENSUAMP00000009705	zf-CCCH	PF00642.24	3.2e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000010926	CPSF4-201	1132	-	ENSUAMP00000009705	259 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000008051's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000008051's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000008051	CPSF4	52	67.407	ENSUAMG00000007728	CPSF4L	86	67.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000008051	CPSF4	85	98.649	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSUAMG00000008051	CPSF4	51	66.452	ENSAPOG00000004921	cpsf4	87	66.452	Acanthochromis_polyacanthus
ENSUAMG00000008051	CPSF4	85	89.474	ENSAMEG00000006252	CPSF4	92	89.474	Ailuropoda_melanoleuca
ENSUAMG00000008051	CPSF4	85	86.425	ENSACIG00000009248	cpsf4	93	84.513	Amphilophus_citrinellus
ENSUAMG00000008051	CPSF4	85	80.658	ENSAOCG00000019616	cpsf4	92	80.658	Amphiprion_ocellaris
ENSUAMG00000008051	CPSF4	85	80.658	ENSAPEG00000011679	cpsf4	92	80.658	Amphiprion_percula
ENSUAMG00000008051	CPSF4	85	83.772	ENSATEG00000007010	cpsf4	91	82.667	Anabas_testudineus
ENSUAMG00000008051	CPSF4	85	81.377	ENSACAG00000012941	CPSF4	82	80.567	Anolis_carolinensis
ENSUAMG00000008051	CPSF4	85	88.664	ENSANAG00000021360	CPSF4	92	88.664	Aotus_nancymaae
ENSUAMG00000008051	CPSF4	73	91.579	ENSACLG00000010374	cpsf4	79	93.220	Astatotilapia_calliptera
ENSUAMG00000008051	CPSF4	86	78.400	ENSAMXG00000031647	cpsf4	98	79.116	Astyanax_mexicanus
ENSUAMG00000008051	CPSF4	85	99.095	ENSBTAG00000002090	CPSF4	91	99.095	Bos_taurus
ENSUAMG00000008051	CPSF4	85	88.664	ENSCJAG00000015826	CPSF4	92	88.664	Callithrix_jacchus
ENSUAMG00000008051	CPSF4	85	89.069	ENSCAFG00000015036	CPSF4	99	88.824	Canis_familiaris
ENSUAMG00000008051	CPSF4	85	79.352	ENSCAFG00020014462	CPSF4	92	82.186	Canis_lupus_dingo
ENSUAMG00000008051	CPSF4	85	88.664	ENSCHIG00000014313	CPSF4	92	88.664	Capra_hircus
ENSUAMG00000008051	CPSF4	88	88.646	ENSTSYG00000014604	-	91	90.090	Carlito_syrichta
ENSUAMG00000008051	CPSF4	85	98.649	ENSTSYG00000005712	-	91	98.649	Carlito_syrichta
ENSUAMG00000008051	CPSF4	76	90.955	ENSTSYG00000008195	-	89	92.079	Carlito_syrichta
ENSUAMG00000008051	CPSF4	66	86.735	ENSCAPG00000013881	CPSF4	78	86.735	Cavia_aperea
ENSUAMG00000008051	CPSF4	85	99.550	ENSCPOG00000001783	CPSF4	91	99.550	Cavia_porcellus
ENSUAMG00000008051	CPSF4	85	88.664	ENSCCAG00000028291	CPSF4	92	88.664	Cebus_capucinus
ENSUAMG00000008051	CPSF4	85	90.950	ENSCATG00000038440	CPSF4	92	88.664	Cercocebus_atys
ENSUAMG00000008051	CPSF4	85	89.069	ENSCLAG00000007050	CPSF4	92	89.069	Chinchilla_lanigera
ENSUAMG00000008051	CPSF4	85	88.664	ENSCSAG00000017795	CPSF4	92	88.664	Chlorocebus_sabaeus
ENSUAMG00000008051	CPSF4	64	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSUAMG00000008051	CPSF4	65	79.381	ENSCPBG00000020869	CPSF4	90	78.351	Chrysemys_picta_bellii
ENSUAMG00000008051	CPSF4	67	71.264	ENSCING00000021080	-	68	70.056	Ciona_intestinalis
ENSUAMG00000008051	CPSF4	69	71.910	ENSCSAVG00000011469	-	60	72.254	Ciona_savignyi
ENSUAMG00000008051	CPSF4	85	90.045	ENSCANG00000019384	CPSF4	92	88.664	Colobus_angolensis_palliatus
ENSUAMG00000008051	CPSF4	85	99.550	ENSCGRG00001024184	Cpsf4	91	99.550	Cricetulus_griseus_chok1gshd
ENSUAMG00000008051	CPSF4	85	89.474	ENSCGRG00000013892	Cpsf4	92	89.474	Cricetulus_griseus_crigri
ENSUAMG00000008051	CPSF4	73	91.053	ENSCSEG00000019055	cpsf4	92	78.601	Cynoglossus_semilaevis
ENSUAMG00000008051	CPSF4	85	79.012	ENSCVAG00000016528	cpsf4	92	79.012	Cyprinodon_variegatus
ENSUAMG00000008051	CPSF4	85	77.510	ENSDARG00000020217	cpsf4	92	77.912	Danio_rerio
ENSUAMG00000008051	CPSF4	85	89.069	ENSDNOG00000006344	CPSF4	92	89.069	Dasypus_novemcinctus
ENSUAMG00000008051	CPSF4	65	86.154	ENSDORG00000000742	Cpsf4	90	86.154	Dipodomys_ordii
ENSUAMG00000008051	CPSF4	66	70.115	FBgn0015621	Clp	59	70.115	Drosophila_melanogaster
ENSUAMG00000008051	CPSF4	64	98.788	ENSETEG00000002608	CPSF4	61	98.788	Echinops_telfairi
ENSUAMG00000008051	CPSF4	87	70.870	ENSEBUG00000012552	cpsf4	92	69.828	Eptatretus_burgeri
ENSUAMG00000008051	CPSF4	85	99.550	ENSEASG00005002487	CPSF4	91	99.550	Equus_asinus_asinus
ENSUAMG00000008051	CPSF4	85	89.474	ENSECAG00000007525	CPSF4	92	89.474	Equus_caballus
ENSUAMG00000008051	CPSF4	85	76.800	ENSELUG00000011481	cpsf4	92	76.800	Esox_lucius
ENSUAMG00000008051	CPSF4	85	89.474	ENSFCAG00000015070	CPSF4	92	89.474	Felis_catus
ENSUAMG00000008051	CPSF4	64	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSUAMG00000008051	CPSF4	85	94.570	ENSFALG00000013799	CPSF4	91	94.570	Ficedula_albicollis
ENSUAMG00000008051	CPSF4	75	87.330	ENSFDAG00000014092	CPSF4	91	87.330	Fukomys_damarensis
ENSUAMG00000008051	CPSF4	85	79.424	ENSFHEG00000010880	cpsf4	92	79.424	Fundulus_heteroclitus
ENSUAMG00000008051	CPSF4	85	78.814	ENSGMOG00000002330	cpsf4	93	74.689	Gadus_morhua
ENSUAMG00000008051	CPSF4	89	42.857	ENSGALG00000004441	-	55	51.064	Gallus_gallus
ENSUAMG00000008051	CPSF4	85	94.570	ENSGALG00000004714	CPSF4	91	94.570	Gallus_gallus
ENSUAMG00000008051	CPSF4	85	78.512	ENSGAFG00000010580	cpsf4	92	79.752	Gambusia_affinis
ENSUAMG00000008051	CPSF4	85	80.603	ENSGACG00000007792	cpsf4	91	80.603	Gasterosteus_aculeatus
ENSUAMG00000008051	CPSF4	70	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSUAMG00000008051	CPSF4	85	82.996	ENSGAGG00000021835	CPSF4	92	82.186	Gopherus_agassizii
ENSUAMG00000008051	CPSF4	85	88.664	ENSGGOG00000015131	CPSF4	92	88.664	Gorilla_gorilla
ENSUAMG00000008051	CPSF4	85	78.189	ENSHBUG00000013699	cpsf4	92	78.189	Haplochromis_burtoni
ENSUAMG00000008051	CPSF4	85	86.345	ENSHGLG00000017150	CPSF4	92	88.353	Heterocephalus_glaber_female
ENSUAMG00000008051	CPSF4	68	70.056	ENSHGLG00100017302	-	81	70.056	Heterocephalus_glaber_male
ENSUAMG00000008051	CPSF4	72	81.776	ENSHGLG00100009215	-	91	79.907	Heterocephalus_glaber_male
ENSUAMG00000008051	CPSF4	85	78.601	ENSHCOG00000004397	cpsf4	92	78.601	Hippocampus_comes
ENSUAMG00000008051	CPSF4	85	77.108	ENSIPUG00000017147	cpsf4	92	74.699	Ictalurus_punctatus
ENSUAMG00000008051	CPSF4	85	100.000	ENSSTOG00000001688	CPSF4	91	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000008051	CPSF4	85	89.069	ENSJJAG00000019426	Cpsf4	92	89.069	Jaculus_jaculus
ENSUAMG00000008051	CPSF4	85	77.778	ENSKMAG00000015642	cpsf4	92	77.778	Kryptolebias_marmoratus
ENSUAMG00000008051	CPSF4	85	81.048	ENSLACG00000010938	CPSF4	92	81.048	Latimeria_chalumnae
ENSUAMG00000008051	CPSF4	85	65.022	ENSLACG00000018470	-	93	62.343	Latimeria_chalumnae
ENSUAMG00000008051	CPSF4	85	79.757	ENSLOCG00000004814	cpsf4	92	79.352	Lepisosteus_oculatus
ENSUAMG00000008051	CPSF4	85	89.069	ENSLAFG00000000159	CPSF4	92	89.069	Loxodonta_africana
ENSUAMG00000008051	CPSF4	85	90.045	ENSMFAG00000001462	CPSF4	88	98.225	Macaca_fascicularis
ENSUAMG00000008051	CPSF4	85	88.664	ENSMMUG00000019191	CPSF4	92	88.664	Macaca_mulatta
ENSUAMG00000008051	CPSF4	85	90.045	ENSMNEG00000032306	CPSF4	92	88.664	Macaca_nemestrina
ENSUAMG00000008051	CPSF4	85	90.950	ENSMLEG00000034721	CPSF4	92	88.664	Mandrillus_leucophaeus
ENSUAMG00000008051	CPSF4	85	79.098	ENSMAMG00000006244	cpsf4	92	79.592	Mastacembelus_armatus
ENSUAMG00000008051	CPSF4	85	78.189	ENSMZEG00005007515	cpsf4	92	78.189	Maylandia_zebra
ENSUAMG00000008051	CPSF4	72	94.118	ENSMGAG00000004235	CPSF4	92	91.667	Meleagris_gallopavo
ENSUAMG00000008051	CPSF4	85	89.474	ENSMAUG00000021253	Cpsf4	92	89.474	Mesocricetus_auratus
ENSUAMG00000008051	CPSF4	85	88.664	ENSMICG00000017429	CPSF4	92	88.664	Microcebus_murinus
ENSUAMG00000008051	CPSF4	85	89.474	ENSMOCG00000014901	Cpsf4	92	89.474	Microtus_ochrogaster
ENSUAMG00000008051	CPSF4	85	79.508	ENSMMOG00000001813	cpsf4	95	86.667	Mola_mola
ENSUAMG00000008051	CPSF4	85	84.211	ENSMODG00000001367	CPSF4	92	83.401	Monodelphis_domestica
ENSUAMG00000008051	CPSF4	85	79.592	ENSMALG00000012611	cpsf4	92	79.592	Monopterus_albus
ENSUAMG00000008051	CPSF4	85	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	91	100.000	Mus_caroli
ENSUAMG00000008051	CPSF4	85	100.000	ENSMUSG00000029625	Cpsf4	91	100.000	Mus_musculus
ENSUAMG00000008051	CPSF4	85	100.000	MGP_PahariEiJ_G0024581	Cpsf4	91	100.000	Mus_pahari
ENSUAMG00000008051	CPSF4	85	99.548	MGP_SPRETEiJ_G0029013	Cpsf4	91	99.548	Mus_spretus
ENSUAMG00000008051	CPSF4	85	89.474	ENSMPUG00000016508	CPSF4	92	89.474	Mustela_putorius_furo
ENSUAMG00000008051	CPSF4	72	98.930	ENSMLUG00000010980	CPSF4	89	98.930	Myotis_lucifugus
ENSUAMG00000008051	CPSF4	85	89.069	ENSNGAG00000001567	Cpsf4	92	89.069	Nannospalax_galili
ENSUAMG00000008051	CPSF4	76	77.169	ENSNBRG00000003943	cpsf4	89	77.169	Neolamprologus_brichardi
ENSUAMG00000008051	CPSF4	85	98.649	ENSNLEG00000011074	CPSF4	91	98.649	Nomascus_leucogenys
ENSUAMG00000008051	CPSF4	85	84.211	ENSMEUG00000006955	CPSF4	92	83.401	Notamacropus_eugenii
ENSUAMG00000008051	CPSF4	85	88.664	ENSOPRG00000013663	CPSF4	92	88.664	Ochotona_princeps
ENSUAMG00000008051	CPSF4	85	84.234	ENSODEG00000018283	-	83	84.234	Octodon_degus
ENSUAMG00000008051	CPSF4	85	71.548	ENSODEG00000009779	-	90	71.548	Octodon_degus
ENSUAMG00000008051	CPSF4	85	89.474	ENSODEG00000011181	-	92	89.474	Octodon_degus
ENSUAMG00000008051	CPSF4	85	78.189	ENSONIG00000008495	cpsf4	92	78.189	Oreochromis_niloticus
ENSUAMG00000008051	CPSF4	72	83.962	ENSOANG00000007729	CPSF4	91	81.132	Ornithorhynchus_anatinus
ENSUAMG00000008051	CPSF4	89	53.585	ENSOANG00000009568	-	63	67.978	Ornithorhynchus_anatinus
ENSUAMG00000008051	CPSF4	85	88.664	ENSOCUG00000002437	CPSF4	64	88.664	Oryctolagus_cuniculus
ENSUAMG00000008051	CPSF4	85	78.601	ENSORLG00000022798	cpsf4	91	79.835	Oryzias_latipes
ENSUAMG00000008051	CPSF4	85	78.601	ENSORLG00020008548	cpsf4	92	75.720	Oryzias_latipes_hni
ENSUAMG00000008051	CPSF4	85	78.189	ENSORLG00015019575	cpsf4	92	75.309	Oryzias_latipes_hsok
ENSUAMG00000008051	CPSF4	85	77.366	ENSOMEG00000005176	cpsf4	94	73.387	Oryzias_melastigma
ENSUAMG00000008051	CPSF4	85	89.069	ENSOGAG00000010884	CPSF4	92	89.069	Otolemur_garnettii
ENSUAMG00000008051	CPSF4	85	76.096	ENSOARG00000018668	CPSF4	92	74.900	Ovis_aries
ENSUAMG00000008051	CPSF4	85	88.259	ENSPPAG00000043355	CPSF4	92	88.259	Pan_paniscus
ENSUAMG00000008051	CPSF4	85	89.474	ENSPPRG00000003134	CPSF4	92	89.474	Panthera_pardus
ENSUAMG00000008051	CPSF4	75	87.727	ENSPTIG00000005604	CPSF4	82	87.727	Panthera_tigris_altaica
ENSUAMG00000008051	CPSF4	85	88.259	ENSPTRG00000019453	CPSF4	92	88.259	Pan_troglodytes
ENSUAMG00000008051	CPSF4	85	90.045	ENSPANG00000023123	CPSF4	92	88.664	Papio_anubis
ENSUAMG00000008051	CPSF4	85	78.571	ENSPKIG00000014278	cpsf4	92	78.571	Paramormyrops_kingsleyae
ENSUAMG00000008051	CPSF4	65	79.381	ENSPSIG00000011229	CPSF4	90	78.351	Pelodiscus_sinensis
ENSUAMG00000008051	CPSF4	68	65.341	ENSPSIG00000018198	-	91	65.341	Pelodiscus_sinensis
ENSUAMG00000008051	CPSF4	85	80.090	ENSPMGG00000017735	cpsf4	90	76.233	Periophthalmus_magnuspinnatus
ENSUAMG00000008051	CPSF4	85	89.474	ENSPEMG00000004508	Cpsf4	92	89.474	Peromyscus_maniculatus_bairdii
ENSUAMG00000008051	CPSF4	85	84.211	ENSPCIG00000024776	CPSF4	92	83.401	Phascolarctos_cinereus
ENSUAMG00000008051	CPSF4	85	78.512	ENSPFOG00000014912	cpsf4	92	79.752	Poecilia_formosa
ENSUAMG00000008051	CPSF4	85	77.679	ENSPLAG00000009599	cpsf4	93	75.983	Poecilia_latipinna
ENSUAMG00000008051	CPSF4	85	78.512	ENSPMEG00000009790	cpsf4	92	79.752	Poecilia_mexicana
ENSUAMG00000008051	CPSF4	85	77.686	ENSPREG00000018166	cpsf4	92	74.583	Poecilia_reticulata
ENSUAMG00000008051	CPSF4	72	85.849	ENSPPYG00000017378	CPSF4	91	85.849	Pongo_abelii
ENSUAMG00000008051	CPSF4	85	88.259	ENSPCAG00000001892	CPSF4	92	88.259	Procavia_capensis
ENSUAMG00000008051	CPSF4	85	89.069	ENSPCOG00000012771	CPSF4	92	89.069	Propithecus_coquereli
ENSUAMG00000008051	CPSF4	85	82.186	ENSPVAG00000007531	CPSF4	92	82.186	Pteropus_vampyrus
ENSUAMG00000008051	CPSF4	85	78.189	ENSPNYG00000018559	cpsf4	92	78.189	Pundamilia_nyererei
ENSUAMG00000008051	CPSF4	85	79.839	ENSPNAG00000003736	cpsf4	92	80.242	Pygocentrus_nattereri
ENSUAMG00000008051	CPSF4	85	100.000	ENSRNOG00000000985	Cpsf4	91	100.000	Rattus_norvegicus
ENSUAMG00000008051	CPSF4	72	86.792	ENSRBIG00000033886	CPSF4	91	86.792	Rhinopithecus_bieti
ENSUAMG00000008051	CPSF4	89	97.845	ENSRROG00000040431	CPSF4	94	97.845	Rhinopithecus_roxellana
ENSUAMG00000008051	CPSF4	85	88.664	ENSSBOG00000020493	CPSF4	88	98.225	Saimiri_boliviensis_boliviensis
ENSUAMG00000008051	CPSF4	85	84.211	ENSSHAG00000011533	CPSF4	92	83.401	Sarcophilus_harrisii
ENSUAMG00000008051	CPSF4	85	79.921	ENSSFOG00015007883	cpsf4	92	79.921	Scleropages_formosus
ENSUAMG00000008051	CPSF4	85	85.650	ENSSMAG00000006374	cpsf4	91	85.650	Scophthalmus_maximus
ENSUAMG00000008051	CPSF4	85	79.918	ENSSDUG00000018887	cpsf4	92	79.918	Seriola_dumerili
ENSUAMG00000008051	CPSF4	85	79.918	ENSSLDG00000019078	cpsf4	92	79.918	Seriola_lalandi_dorsalis
ENSUAMG00000008051	CPSF4	72	87.264	ENSSARG00000012416	CPSF4	91	87.264	Sorex_araneus
ENSUAMG00000008051	CPSF4	85	83.806	ENSSPUG00000003549	CPSF4	92	81.781	Sphenodon_punctatus
ENSUAMG00000008051	CPSF4	74	72.396	ENSSPUG00000014803	-	78	77.841	Sphenodon_punctatus
ENSUAMG00000008051	CPSF4	85	86.878	ENSSPAG00000006174	cpsf4	91	86.878	Stegastes_partitus
ENSUAMG00000008051	CPSF4	85	99.099	ENSSSCG00000026896	CPSF4	91	99.099	Sus_scrofa
ENSUAMG00000008051	CPSF4	85	93.274	ENSTGUG00000007552	CPSF4	91	93.274	Taeniopygia_guttata
ENSUAMG00000008051	CPSF4	87	77.959	ENSTRUG00000024220	cpsf4	94	77.642	Takifugu_rubripes
ENSUAMG00000008051	CPSF4	87	77.551	ENSTNIG00000006265	cpsf4	94	78.049	Tetraodon_nigroviridis
ENSUAMG00000008051	CPSF4	72	74.057	ENSTBEG00000011406	CPSF4	90	73.113	Tupaia_belangeri
ENSUAMG00000008051	CPSF4	73	99.474	ENSTTRG00000003007	CPSF4	71	99.474	Tursiops_truncatus
ENSUAMG00000008051	CPSF4	85	100.000	ENSUMAG00000009474	CPSF4	91	100.000	Ursus_maritimus
ENSUAMG00000008051	CPSF4	85	99.099	ENSVVUG00000008824	CPSF4	91	99.099	Vulpes_vulpes
ENSUAMG00000008051	CPSF4	85	77.432	ENSXETG00000009892	cpsf4	92	79.377	Xenopus_tropicalis
ENSUAMG00000008051	CPSF4	87	60.558	ENSXETG00000004641	cpsf4l	94	59.127	Xenopus_tropicalis
ENSUAMG00000008051	CPSF4	85	78.099	ENSXCOG00000016040	cpsf4	92	79.339	Xiphophorus_couchianus
ENSUAMG00000008051	CPSF4	85	78.512	ENSXMAG00000024670	cpsf4	92	79.752	Xiphophorus_maculatus