EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000008142 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 13041 bases
Position: chrLZNR01021337.1:3021-16061
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000009834	SMN	PF06003.12	2.2e-16	1	1
ENSUAMP00000009836	SMN	PF06003.12	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000011069	SMNDC1-201	1363	-	ENSUAMP00000009834	199 (aa)	-	UPI00005A4F30
ENSUAMT00000011071	SMNDC1-202	717	-	ENSUAMP00000009836	238 (aa)	-	UPI000046A342

Gene Model

Click here to download ENSUAMG00000008142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000008142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000008142	SMNDC1	100	99.580	ENSG00000119953	SMNDC1	100	99.580	Homo_sapiens
ENSUAMG00000008142	SMNDC1	100	74.790	ENSAPOG00000021772	smndc1	100	74.790	Acanthochromis_polyacanthus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSAMEG00000005251	SMNDC1	100	100.000	Ailuropoda_melanoleuca
ENSUAMG00000008142	SMNDC1	100	77.406	ENSACIG00000004819	smndc1	100	77.406	Amphilophus_citrinellus
ENSUAMG00000008142	SMNDC1	100	74.790	ENSAOCG00000017869	smndc1	100	74.790	Amphiprion_ocellaris
ENSUAMG00000008142	SMNDC1	100	74.790	ENSAPEG00000007752	smndc1	100	74.790	Amphiprion_percula
ENSUAMG00000008142	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSUAMG00000008142	SMNDC1	99	96.465	ENSAPLG00000004322	SMNDC1	100	96.465	Anas_platyrhynchos
ENSUAMG00000008142	SMNDC1	100	94.958	ENSACAG00000005983	SMNDC1	100	94.958	Anolis_carolinensis
ENSUAMG00000008142	SMNDC1	100	100.000	ENSANAG00000032875	SMNDC1	100	100.000	Aotus_nancymaae
ENSUAMG00000008142	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSUAMG00000008142	SMNDC1	100	76.050	ENSAMXG00000020310	smndc1	100	76.050	Astyanax_mexicanus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSBTAG00000000551	SMNDC1	100	99.580	Bos_taurus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCJAG00000018624	SMNDC1	100	100.000	Callithrix_jacchus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCAFG00000010720	SMNDC1	100	100.000	Canis_familiaris
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCAFG00020011913	SMNDC1	100	100.000	Canis_lupus_dingo
ENSUAMG00000008142	SMNDC1	100	99.580	ENSCHIG00000010604	SMNDC1	100	99.580	Capra_hircus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSTSYG00000026454	SMNDC1	100	99.580	Carlito_syrichta
ENSUAMG00000008142	SMNDC1	100	84.167	ENSCAPG00000009132	SMNDC1	100	99.005	Cavia_aperea
ENSUAMG00000008142	SMNDC1	100	99.160	ENSCPOG00000031666	SMNDC1	100	99.160	Cavia_porcellus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCCAG00000021793	SMNDC1	100	100.000	Cebus_capucinus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSCATG00000035910	SMNDC1	100	99.580	Cercocebus_atys
ENSUAMG00000008142	SMNDC1	100	98.739	ENSCLAG00000002838	SMNDC1	100	98.739	Chinchilla_lanigera
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCSAG00000005169	SMNDC1	100	100.000	Chlorocebus_sabaeus
ENSUAMG00000008142	SMNDC1	81	99.482	ENSCHOG00000002936	SMNDC1	100	99.482	Choloepus_hoffmanni
ENSUAMG00000008142	SMNDC1	100	97.899	ENSCPBG00000012837	SMNDC1	100	97.899	Chrysemys_picta_bellii
ENSUAMG00000008142	SMNDC1	100	100.000	ENSCANG00000031720	-	100	100.000	Colobus_angolensis_palliatus
ENSUAMG00000008142	SMNDC1	100	92.017	ENSCANG00000034620	-	100	92.017	Colobus_angolensis_palliatus
ENSUAMG00000008142	SMNDC1	100	78.992	ENSCANG00000036994	-	100	78.992	Colobus_angolensis_palliatus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSCGRG00001012973	Smndc1	100	99.160	Cricetulus_griseus_chok1gshd
ENSUAMG00000008142	SMNDC1	100	99.160	ENSCGRG00000012396	Smndc1	100	99.160	Cricetulus_griseus_crigri
ENSUAMG00000008142	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSUAMG00000008142	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSUAMG00000008142	SMNDC1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSUAMG00000008142	SMNDC1	100	100.000	ENSDNOG00000016387	SMNDC1	83	100.000	Dasypus_novemcinctus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSDORG00000023715	Smndc1	100	100.000	Dipodomys_ordii
ENSUAMG00000008142	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSUAMG00000008142	SMNDC1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSUAMG00000008142	SMNDC1	100	100.000	ENSEASG00005014930	SMNDC1	100	100.000	Equus_asinus_asinus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSECAG00000029973	SMNDC1	100	100.000	Equus_caballus
ENSUAMG00000008142	SMNDC1	99	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSUAMG00000008142	SMNDC1	100	77.731	ENSELUG00000000227	smndc1	100	77.731	Esox_lucius
ENSUAMG00000008142	SMNDC1	100	100.000	ENSFCAG00000027353	SMNDC1	100	100.000	Felis_catus
ENSUAMG00000008142	SMNDC1	100	96.218	ENSFALG00000002306	SMNDC1	100	96.218	Ficedula_albicollis
ENSUAMG00000008142	SMNDC1	100	98.739	ENSFDAG00000006468	SMNDC1	100	98.739	Fukomys_damarensis
ENSUAMG00000008142	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSUAMG00000008142	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSUAMG00000008142	SMNDC1	100	96.218	ENSGALG00000008561	SMNDC1	100	96.218	Gallus_gallus
ENSUAMG00000008142	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSUAMG00000008142	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSUAMG00000008142	SMNDC1	100	97.899	ENSGAGG00000024547	SMNDC1	100	97.899	Gopherus_agassizii
ENSUAMG00000008142	SMNDC1	100	100.000	ENSGGOG00000010071	SMNDC1	100	100.000	Gorilla_gorilla
ENSUAMG00000008142	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSUAMG00000008142	SMNDC1	100	68.852	ENSHGLG00000001157	-	100	65.714	Heterocephalus_glaber_female
ENSUAMG00000008142	SMNDC1	100	98.739	ENSHGLG00000013390	-	100	98.739	Heterocephalus_glaber_female
ENSUAMG00000008142	SMNDC1	100	98.739	ENSHGLG00100004814	-	100	98.739	Heterocephalus_glaber_male
ENSUAMG00000008142	SMNDC1	100	77.049	ENSHGLG00100004278	-	100	76.639	Heterocephalus_glaber_male
ENSUAMG00000008142	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSUAMG00000008142	SMNDC1	100	77.311	ENSIPUG00000004217	smndc1	100	77.311	Ictalurus_punctatus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSSTOG00000006088	SMNDC1	100	99.580	Ictidomys_tridecemlineatus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSJJAG00000019974	Smndc1	100	99.160	Jaculus_jaculus
ENSUAMG00000008142	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSUAMG00000008142	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSUAMG00000008142	SMNDC1	100	84.034	ENSLACG00000007784	SMNDC1	100	84.034	Latimeria_chalumnae
ENSUAMG00000008142	SMNDC1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSLAFG00000014353	SMNDC1	100	99.580	Loxodonta_africana
ENSUAMG00000008142	SMNDC1	100	100.000	ENSMFAG00000002433	-	100	100.000	Macaca_fascicularis
ENSUAMG00000008142	SMNDC1	100	81.933	ENSMFAG00000038381	-	100	81.933	Macaca_fascicularis
ENSUAMG00000008142	SMNDC1	100	100.000	ENSMMUG00000007775	SMNDC1	100	100.000	Macaca_mulatta
ENSUAMG00000008142	SMNDC1	100	81.933	ENSMMUG00000045875	-	100	81.933	Macaca_mulatta
ENSUAMG00000008142	SMNDC1	100	100.000	ENSMNEG00000042963	-	100	100.000	Macaca_nemestrina
ENSUAMG00000008142	SMNDC1	100	88.235	ENSMNEG00000033853	-	100	88.235	Macaca_nemestrina
ENSUAMG00000008142	SMNDC1	100	93.724	ENSMLEG00000040236	SMNDC1	100	93.305	Mandrillus_leucophaeus
ENSUAMG00000008142	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSUAMG00000008142	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSUAMG00000008142	SMNDC1	99	95.960	ENSMGAG00000010777	SMNDC1	84	96.000	Meleagris_gallopavo
ENSUAMG00000008142	SMNDC1	100	100.000	ENSMAUG00000012243	-	100	100.000	Mesocricetus_auratus
ENSUAMG00000008142	SMNDC1	99	80.591	ENSMAUG00000005459	-	93	80.591	Mesocricetus_auratus
ENSUAMG00000008142	SMNDC1	100	86.134	ENSMICG00000031640	-	100	86.134	Microcebus_murinus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSMICG00000027336	-	100	99.160	Microcebus_murinus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSMOCG00000002458	Smndc1	100	99.580	Microtus_ochrogaster
ENSUAMG00000008142	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSUAMG00000008142	SMNDC1	100	99.160	ENSMODG00000010542	SMNDC1	100	99.160	Monodelphis_domestica
ENSUAMG00000008142	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSUAMG00000008142	SMNDC1	100	98.739	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.739	Mus_caroli
ENSUAMG00000008142	SMNDC1	100	99.160	ENSMUSG00000025024	Smndc1	100	99.160	Mus_musculus
ENSUAMG00000008142	SMNDC1	100	98.739	MGP_PahariEiJ_G0014560	Smndc1	100	98.739	Mus_pahari
ENSUAMG00000008142	SMNDC1	100	99.160	MGP_SPRETEiJ_G0023993	Smndc1	100	99.160	Mus_spretus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSMPUG00000002089	SMNDC1	100	100.000	Mustela_putorius_furo
ENSUAMG00000008142	SMNDC1	100	98.739	ENSMLUG00000016007	SMNDC1	100	98.739	Myotis_lucifugus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSNGAG00000006833	Smndc1	100	99.160	Nannospalax_galili
ENSUAMG00000008142	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSUAMG00000008142	SMNDC1	100	100.000	ENSNLEG00000015471	SMNDC1	100	100.000	Nomascus_leucogenys
ENSUAMG00000008142	SMNDC1	98	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSUAMG00000008142	SMNDC1	100	99.160	ENSOPRG00000015348	SMNDC1	100	99.160	Ochotona_princeps
ENSUAMG00000008142	SMNDC1	99	73.232	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSUAMG00000008142	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSUAMG00000008142	SMNDC1	100	97.899	ENSOANG00000001598	SMNDC1	100	97.899	Ornithorhynchus_anatinus
ENSUAMG00000008142	SMNDC1	100	75.630	ENSOCUG00000012274	-	100	77.311	Oryctolagus_cuniculus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSOCUG00000008145	-	100	99.160	Oryctolagus_cuniculus
ENSUAMG00000008142	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSUAMG00000008142	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSUAMG00000008142	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSUAMG00000008142	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSUAMG00000008142	SMNDC1	100	99.580	ENSOGAG00000000571	SMNDC1	100	99.580	Otolemur_garnettii
ENSUAMG00000008142	SMNDC1	100	99.580	ENSOARG00000009500	SMNDC1	100	99.580	Ovis_aries
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPPAG00000027815	SMNDC1	100	100.000	Pan_paniscus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPPRG00000013749	SMNDC1	100	100.000	Panthera_pardus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPTIG00000011451	SMNDC1	100	100.000	Panthera_tigris_altaica
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPTRG00000002937	SMNDC1	100	100.000	Pan_troglodytes
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPANG00000020805	-	100	100.000	Papio_anubis
ENSUAMG00000008142	SMNDC1	100	94.118	ENSPANG00000031346	-	100	94.118	Papio_anubis
ENSUAMG00000008142	SMNDC1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSUAMG00000008142	SMNDC1	100	97.479	ENSPSIG00000012257	SMNDC1	100	97.479	Pelodiscus_sinensis
ENSUAMG00000008142	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPEMG00000022058	Smndc1	100	100.000	Peromyscus_maniculatus_bairdii
ENSUAMG00000008142	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSUAMG00000008142	SMNDC1	97	63.043	ENSPCIG00000009693	-	100	63.043	Phascolarctos_cinereus
ENSUAMG00000008142	SMNDC1	100	99.160	ENSPCIG00000018419	SMNDC1	100	99.160	Phascolarctos_cinereus
ENSUAMG00000008142	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSUAMG00000008142	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSUAMG00000008142	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSUAMG00000008142	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSUAMG00000008142	SMNDC1	100	100.000	ENSPPYG00000002643	SMNDC1	100	100.000	Pongo_abelii
ENSUAMG00000008142	SMNDC1	81	98.446	ENSPCAG00000016183	SMNDC1	100	98.446	Procavia_capensis
ENSUAMG00000008142	SMNDC1	100	99.580	ENSPCOG00000024343	SMNDC1	100	99.580	Propithecus_coquereli
ENSUAMG00000008142	SMNDC1	100	76.050	ENSPVAG00000004368	SMNDC1	100	76.050	Pteropus_vampyrus
ENSUAMG00000008142	SMNDC1	100	75.879	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSUAMG00000008142	SMNDC1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSUAMG00000008142	SMNDC1	100	98.739	ENSRNOG00000014833	Smndc1	100	98.739	Rattus_norvegicus
ENSUAMG00000008142	SMNDC1	100	83.613	ENSRBIG00000032452	-	100	83.613	Rhinopithecus_bieti
ENSUAMG00000008142	SMNDC1	100	99.580	ENSRBIG00000000224	-	100	99.580	Rhinopithecus_bieti
ENSUAMG00000008142	SMNDC1	100	84.034	ENSRROG00000039125	-	100	84.034	Rhinopithecus_roxellana
ENSUAMG00000008142	SMNDC1	100	100.000	ENSRROG00000044992	-	100	100.000	Rhinopithecus_roxellana
ENSUAMG00000008142	SMNDC1	100	100.000	ENSSBOG00000026789	SMNDC1	100	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000008142	SMNDC1	100	99.160	ENSSHAG00000015189	SMNDC1	100	99.160	Sarcophilus_harrisii
ENSUAMG00000008142	SMNDC1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSUAMG00000008142	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSUAMG00000008142	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSUAMG00000008142	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSUAMG00000008142	SMNDC1	100	98.739	ENSSARG00000006063	SMNDC1	100	98.739	Sorex_araneus
ENSUAMG00000008142	SMNDC1	100	96.218	ENSSPUG00000004574	SMNDC1	100	96.218	Sphenodon_punctatus
ENSUAMG00000008142	SMNDC1	100	74.370	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSUAMG00000008142	SMNDC1	100	99.580	ENSSSCG00000030507	SMNDC1	100	99.580	Sus_scrofa
ENSUAMG00000008142	SMNDC1	100	96.218	ENSTGUG00000010599	SMNDC1	100	96.218	Taeniopygia_guttata
ENSUAMG00000008142	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSUAMG00000008142	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSUAMG00000008142	SMNDC1	100	99.580	ENSTBEG00000014337	SMNDC1	100	99.580	Tupaia_belangeri
ENSUAMG00000008142	SMNDC1	100	100.000	ENSUMAG00000023722	SMNDC1	100	100.000	Ursus_maritimus
ENSUAMG00000008142	SMNDC1	99	99.495	ENSVPAG00000003402	SMNDC1	100	99.495	Vicugna_pacos
ENSUAMG00000008142	SMNDC1	100	100.000	ENSVVUG00000007820	SMNDC1	100	100.000	Vulpes_vulpes
ENSUAMG00000008142	SMNDC1	60	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSUAMG00000008142	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSUAMG00000008142	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus