EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000009786 (Gene tree)
Gene ID: -
Gene Symbol: LSM5
Alias: YER146W
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 1440 bases
Position: chrLZNR01007816.1:107212-108651
Accession: 17162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000012056	LSM	PF01423.22	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000013551	LSM5-201	300	-	ENSUAMP00000012056	77 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000009786's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000009786's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000009786	LSM5	68	100.000	ENSG00000106355	LSM5	81	100.000	Homo_sapiens
ENSUAMG00000009786	LSM5	68	86.538	ENSAPOG00000020779	LSM5	61	86.538	Acanthochromis_polyacanthus
ENSUAMG00000009786	LSM5	68	86.538	ENSAPOG00000011743	LSM5	58	86.538	Acanthochromis_polyacanthus
ENSUAMG00000009786	LSM5	68	92.308	ENSAMEG00000006700	LSM5	57	92.308	Ailuropoda_melanoleuca
ENSUAMG00000009786	LSM5	68	86.538	ENSAOCG00000001636	lsm5	57	86.538	Amphiprion_ocellaris
ENSUAMG00000009786	LSM5	68	86.538	ENSAPEG00000008151	lsm5	57	86.538	Amphiprion_percula
ENSUAMG00000009786	LSM5	68	92.308	ENSACAG00000009530	LSM5	87	92.308	Anolis_carolinensis
ENSUAMG00000009786	LSM5	68	98.077	ENSANAG00000034409	-	81	98.077	Aotus_nancymaae
ENSUAMG00000009786	LSM5	68	65.385	ENSANAG00000037758	-	51	65.385	Aotus_nancymaae
ENSUAMG00000009786	LSM5	65	92.000	ENSANAG00000024192	-	75	92.000	Aotus_nancymaae
ENSUAMG00000009786	LSM5	62	85.417	ENSACLG00000012891	lsm5	55	85.417	Astatotilapia_calliptera
ENSUAMG00000009786	LSM5	62	83.333	ENSBTAG00000052014	-	63	83.333	Bos_taurus
ENSUAMG00000009786	LSM5	70	100.000	ENSBTAG00000002332	LSM5	59	100.000	Bos_taurus
ENSUAMG00000009786	LSM5	68	65.385	WBGene00003079	lsm-5	57	65.385	Caenorhabditis_elegans
ENSUAMG00000009786	LSM5	66	74.510	ENSCJAG00000005678	-	57	74.510	Callithrix_jacchus
ENSUAMG00000009786	LSM5	68	100.000	ENSCJAG00000047379	LSM5	81	100.000	Callithrix_jacchus
ENSUAMG00000009786	LSM5	97	90.667	ENSCAFG00000030781	-	87	90.667	Canis_familiaris
ENSUAMG00000009786	LSM5	68	92.308	ENSCAFG00000019261	-	57	92.308	Canis_familiaris
ENSUAMG00000009786	LSM5	68	92.308	ENSCAFG00020004946	LSM5	57	92.308	Canis_lupus_dingo
ENSUAMG00000009786	LSM5	68	92.308	ENSCHIG00000024539	LSM5	57	92.308	Capra_hircus
ENSUAMG00000009786	LSM5	68	92.308	ENSCHIG00000004079	-	58	92.308	Capra_hircus
ENSUAMG00000009786	LSM5	66	68.627	ENSCHIG00000021428	-	58	68.627	Capra_hircus
ENSUAMG00000009786	LSM5	66	100.000	ENSTSYG00000006449	-	80	100.000	Carlito_syrichta
ENSUAMG00000009786	LSM5	68	86.538	ENSTSYG00000036637	-	71	86.538	Carlito_syrichta
ENSUAMG00000009786	LSM5	68	75.000	ENSTSYG00000028728	-	54	75.000	Carlito_syrichta
ENSUAMG00000009786	LSM5	68	92.308	ENSCPOG00000036386	LSM5	97	85.965	Cavia_porcellus
ENSUAMG00000009786	LSM5	68	100.000	ENSCCAG00000037808	-	81	100.000	Cebus_capucinus
ENSUAMG00000009786	LSM5	68	90.385	ENSCCAG00000000821	-	57	90.385	Cebus_capucinus
ENSUAMG00000009786	LSM5	68	90.385	ENSCCAG00000032123	-	57	90.385	Cebus_capucinus
ENSUAMG00000009786	LSM5	68	65.385	ENSCCAG00000032792	-	51	65.385	Cebus_capucinus
ENSUAMG00000009786	LSM5	66	90.196	ENSCATG00000014790	-	88	90.196	Cercocebus_atys
ENSUAMG00000009786	LSM5	68	100.000	ENSCATG00000040218	LSM5	81	100.000	Cercocebus_atys
ENSUAMG00000009786	LSM5	68	78.846	ENSCLAG00000005062	-	51	78.846	Chinchilla_lanigera
ENSUAMG00000009786	LSM5	61	100.000	ENSCLAG00000000202	LSM5	80	100.000	Chinchilla_lanigera
ENSUAMG00000009786	LSM5	68	92.308	ENSCHOG00000005335	LSM5	68	92.308	Choloepus_hoffmanni
ENSUAMG00000009786	LSM5	68	92.308	ENSCPBG00000013685	LSM5	57	92.308	Chrysemys_picta_bellii
ENSUAMG00000009786	LSM5	65	82.000	ENSCING00000020625	-	55	82.000	Ciona_intestinalis
ENSUAMG00000009786	LSM5	61	80.851	ENSCSAVG00000001439	-	53	80.851	Ciona_savignyi
ENSUAMG00000009786	LSM5	68	100.000	ENSCANG00000039909	LSM5	81	100.000	Colobus_angolensis_palliatus
ENSUAMG00000009786	LSM5	68	92.308	ENSCGRG00001015461	Lsm5	97	85.965	Cricetulus_griseus_chok1gshd
ENSUAMG00000009786	LSM5	68	84.615	ENSCVAG00000004262	lsm5	57	84.615	Cyprinodon_variegatus
ENSUAMG00000009786	LSM5	68	84.615	ENSDARG00000071573	lsm5	57	84.615	Danio_rerio
ENSUAMG00000009786	LSM5	68	82.692	ENSDNOG00000049495	-	58	82.692	Dasypus_novemcinctus
ENSUAMG00000009786	LSM5	68	92.308	ENSDNOG00000034958	LSM5	58	92.308	Dasypus_novemcinctus
ENSUAMG00000009786	LSM5	68	92.308	ENSDORG00000009422	Lsm5	57	92.308	Dipodomys_ordii
ENSUAMG00000009786	LSM5	65	74.000	FBgn0035675	CG6610	55	74.000	Drosophila_melanogaster
ENSUAMG00000009786	LSM5	61	80.851	ENSETEG00000001469	-	59	80.851	Echinops_telfairi
ENSUAMG00000009786	LSM5	68	92.308	ENSETEG00000018068	LSM5	57	92.308	Echinops_telfairi
ENSUAMG00000009786	LSM5	69	81.132	ENSETEG00000010651	-	65	81.132	Echinops_telfairi
ENSUAMG00000009786	LSM5	68	84.615	ENSEBUG00000008540	lsm5	57	84.615	Eptatretus_burgeri
ENSUAMG00000009786	LSM5	68	92.308	ENSEASG00005003500	LSM5	57	92.308	Equus_asinus_asinus
ENSUAMG00000009786	LSM5	70	98.148	ENSECAG00000018445	LSM5	66	98.148	Equus_caballus
ENSUAMG00000009786	LSM5	68	84.615	ENSELUG00000007792	lsm5	57	84.615	Esox_lucius
ENSUAMG00000009786	LSM5	68	100.000	ENSFCAG00000000230	LSM5	81	100.000	Felis_catus
ENSUAMG00000009786	LSM5	68	92.308	ENSFDAG00000008767	LSM5	97	85.965	Fukomys_damarensis
ENSUAMG00000009786	LSM5	69	66.038	ENSFDAG00000008685	-	63	66.038	Fukomys_damarensis
ENSUAMG00000009786	LSM5	66	74.510	ENSFHEG00000004011	lsm5	56	74.510	Fundulus_heteroclitus
ENSUAMG00000009786	LSM5	68	84.615	ENSGMOG00000018235	lsm5	58	84.615	Gadus_morhua
ENSUAMG00000009786	LSM5	68	90.385	ENSGALG00000041625	LSM5	57	90.385	Gallus_gallus
ENSUAMG00000009786	LSM5	68	86.538	ENSGACG00000005528	lsm5	57	86.538	Gasterosteus_aculeatus
ENSUAMG00000009786	LSM5	68	92.308	ENSGAGG00000015593	LSM5	57	92.308	Gopherus_agassizii
ENSUAMG00000009786	LSM5	68	100.000	ENSGGOG00000043469	LSM5	81	100.000	Gorilla_gorilla
ENSUAMG00000009786	LSM5	62	85.417	ENSHBUG00000013773	lsm5	55	85.417	Haplochromis_burtoni
ENSUAMG00000009786	LSM5	61	100.000	ENSHGLG00000011765	LSM5	80	100.000	Heterocephalus_glaber_female
ENSUAMG00000009786	LSM5	61	93.617	ENSHGLG00100015610	LSM5	79	93.617	Heterocephalus_glaber_male
ENSUAMG00000009786	LSM5	65	90.000	ENSIPUG00000021095	LSM5	56	90.000	Ictalurus_punctatus
ENSUAMG00000009786	LSM5	57	73.913	ENSSTOG00000033886	-	52	73.913	Ictidomys_tridecemlineatus
ENSUAMG00000009786	LSM5	61	100.000	ENSSTOG00000012662	LSM5	80	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000009786	LSM5	68	82.692	ENSJJAG00000004475	-	66	82.692	Jaculus_jaculus
ENSUAMG00000009786	LSM5	68	88.462	ENSJJAG00000012145	-	57	88.462	Jaculus_jaculus
ENSUAMG00000009786	LSM5	65	94.000	ENSKMAG00000021861	lsm5	54	94.000	Kryptolebias_marmoratus
ENSUAMG00000009786	LSM5	68	90.385	ENSLBEG00000017379	lsm5	85	90.385	Labrus_bergylta
ENSUAMG00000009786	LSM5	68	88.462	ENSLACG00000022448	LSM5	57	88.462	Latimeria_chalumnae
ENSUAMG00000009786	LSM5	68	84.615	ENSLOCG00000012903	lsm5	57	84.615	Lepisosteus_oculatus
ENSUAMG00000009786	LSM5	68	51.923	ENSLAFG00000027938	-	51	51.923	Loxodonta_africana
ENSUAMG00000009786	LSM5	68	92.308	ENSLAFG00000029579	LSM5	57	92.308	Loxodonta_africana
ENSUAMG00000009786	LSM5	62	93.750	ENSMFAG00000031187	-	81	93.750	Macaca_fascicularis
ENSUAMG00000009786	LSM5	68	88.462	ENSMFAG00000030152	-	57	88.462	Macaca_fascicularis
ENSUAMG00000009786	LSM5	68	100.000	ENSMFAG00000038508	LSM5	81	100.000	Macaca_fascicularis
ENSUAMG00000009786	LSM5	68	100.000	ENSMMUG00000045129	-	81	100.000	Macaca_mulatta
ENSUAMG00000009786	LSM5	68	88.462	ENSMMUG00000030131	-	57	88.462	Macaca_mulatta
ENSUAMG00000009786	LSM5	66	90.196	ENSMMUG00000039822	-	62	90.196	Macaca_mulatta
ENSUAMG00000009786	LSM5	68	88.462	ENSMNEG00000037935	-	57	88.462	Macaca_nemestrina
ENSUAMG00000009786	LSM5	70	100.000	ENSMNEG00000015331	LSM5	82	100.000	Macaca_nemestrina
ENSUAMG00000009786	LSM5	65	92.000	ENSMLEG00000034037	-	83	92.000	Mandrillus_leucophaeus
ENSUAMG00000009786	LSM5	68	100.000	ENSMLEG00000024945	LSM5	81	100.000	Mandrillus_leucophaeus
ENSUAMG00000009786	LSM5	66	86.275	ENSMAMG00000012869	lsm5	56	86.275	Mastacembelus_armatus
ENSUAMG00000009786	LSM5	62	85.417	ENSMZEG00005019554	lsm5	55	85.417	Maylandia_zebra
ENSUAMG00000009786	LSM5	68	90.385	ENSMGAG00000012117	LSM5	57	90.385	Meleagris_gallopavo
ENSUAMG00000009786	LSM5	68	92.308	ENSMAUG00000012222	Lsm5	97	85.965	Mesocricetus_auratus
ENSUAMG00000009786	LSM5	68	90.385	ENSMAUG00000008132	-	57	90.385	Mesocricetus_auratus
ENSUAMG00000009786	LSM5	68	100.000	ENSMICG00000005353	LSM5	81	100.000	Microcebus_murinus
ENSUAMG00000009786	LSM5	68	92.308	ENSMOCG00000012018	Lsm5	97	85.965	Microtus_ochrogaster
ENSUAMG00000009786	LSM5	68	92.308	MGP_CAROLIEiJ_G0028421	Lsm5	100	100.000	Mus_caroli
ENSUAMG00000009786	LSM5	61	100.000	ENSMUSG00000091625	Lsm5	100	100.000	Mus_musculus
ENSUAMG00000009786	LSM5	68	92.308	MGP_PahariEiJ_G0022171	Lsm5	100	100.000	Mus_pahari
ENSUAMG00000009786	LSM5	68	92.308	MGP_SPRETEiJ_G0029423	Lsm5	100	100.000	Mus_spretus
ENSUAMG00000009786	LSM5	68	92.308	ENSMLUG00000017028	LSM5	57	92.308	Myotis_lucifugus
ENSUAMG00000009786	LSM5	68	92.308	ENSNGAG00000024142	Lsm5	97	85.965	Nannospalax_galili
ENSUAMG00000009786	LSM5	60	91.304	ENSNBRG00000009964	LSM5	98	91.304	Neolamprologus_brichardi
ENSUAMG00000009786	LSM5	68	100.000	ENSNLEG00000015268	LSM5	81	100.000	Nomascus_leucogenys
ENSUAMG00000009786	LSM5	68	92.308	ENSODEG00000019072	-	57	92.308	Octodon_degus
ENSUAMG00000009786	LSM5	68	92.308	ENSODEG00000008258	-	57	92.308	Octodon_degus
ENSUAMG00000009786	LSM5	51	61.538	ENSOANG00000014540	-	52	61.538	Ornithorhynchus_anatinus
ENSUAMG00000009786	LSM5	68	92.308	ENSOCUG00000029043	LSM5	57	92.308	Oryctolagus_cuniculus
ENSUAMG00000009786	LSM5	68	84.615	ENSORLG00020003019	lsm5	51	84.615	Oryzias_latipes_hni
ENSUAMG00000009786	LSM5	68	84.615	ENSORLG00015003338	lsm5	57	84.615	Oryzias_latipes_hsok
ENSUAMG00000009786	LSM5	68	82.692	ENSOMEG00000001078	lsm5	57	82.692	Oryzias_melastigma
ENSUAMG00000009786	LSM5	68	92.308	ENSOGAG00000013892	LSM5	57	92.308	Otolemur_garnettii
ENSUAMG00000009786	LSM5	68	92.308	ENSOARG00000006944	LSM5	57	92.308	Ovis_aries
ENSUAMG00000009786	LSM5	68	100.000	ENSPPAG00000003697	-	81	100.000	Pan_paniscus
ENSUAMG00000009786	LSM5	68	100.000	ENSPPRG00000002550	LSM5	81	100.000	Panthera_pardus
ENSUAMG00000009786	LSM5	68	100.000	ENSPTIG00000015604	LSM5	81	100.000	Panthera_tigris_altaica
ENSUAMG00000009786	LSM5	83	89.062	ENSPTRG00000019057	LSM5	74	89.062	Pan_troglodytes
ENSUAMG00000009786	LSM5	83	89.062	ENSPTRG00000049488	-	74	89.062	Pan_troglodytes
ENSUAMG00000009786	LSM5	68	100.000	ENSPANG00000032179	-	81	100.000	Papio_anubis
ENSUAMG00000009786	LSM5	68	86.538	ENSPANG00000033477	-	57	86.538	Papio_anubis
ENSUAMG00000009786	LSM5	66	90.196	ENSPANG00000032538	-	62	90.196	Papio_anubis
ENSUAMG00000009786	LSM5	68	84.615	ENSPKIG00000011910	lsm5	57	84.615	Paramormyrops_kingsleyae
ENSUAMG00000009786	LSM5	70	66.667	ENSPEMG00000022375	-	66	66.667	Peromyscus_maniculatus_bairdii
ENSUAMG00000009786	LSM5	74	85.965	ENSPEMG00000019994	-	97	85.965	Peromyscus_maniculatus_bairdii
ENSUAMG00000009786	LSM5	68	84.615	ENSPFOG00000001433	lsm5	57	84.615	Poecilia_formosa
ENSUAMG00000009786	LSM5	65	92.000	ENSPLAG00000009665	lsm5	55	92.000	Poecilia_latipinna
ENSUAMG00000009786	LSM5	68	84.615	ENSPMEG00000022265	lsm5	57	84.615	Poecilia_mexicana
ENSUAMG00000009786	LSM5	68	98.077	ENSPPYG00000017661	LSM5	57	98.077	Pongo_abelii
ENSUAMG00000009786	LSM5	68	92.308	ENSPCAG00000013740	LSM5	64	92.308	Procavia_capensis
ENSUAMG00000009786	LSM5	68	92.308	ENSPVAG00000009786	LSM5	57	92.308	Pteropus_vampyrus
ENSUAMG00000009786	LSM5	62	85.417	ENSPNYG00000022236	lsm5	55	85.417	Pundamilia_nyererei
ENSUAMG00000009786	LSM5	68	82.692	ENSPNAG00000001887	lsm5	57	82.692	Pygocentrus_nattereri
ENSUAMG00000009786	LSM5	68	92.308	ENSRNOG00000042126	Lsm5	57	92.308	Rattus_norvegicus
ENSUAMG00000009786	LSM5	68	84.906	ENSRNOG00000027305	AABR07065089.1	58	84.906	Rattus_norvegicus
ENSUAMG00000009786	LSM5	69	100.000	ENSRBIG00000027803	-	82	100.000	Rhinopithecus_bieti
ENSUAMG00000009786	LSM5	68	92.308	ENSRBIG00000030714	-	57	92.308	Rhinopithecus_bieti
ENSUAMG00000009786	LSM5	68	92.308	ENSRBIG00000024431	-	57	92.308	Rhinopithecus_bieti
ENSUAMG00000009786	LSM5	68	92.308	ENSRBIG00000030340	-	57	92.308	Rhinopithecus_bieti
ENSUAMG00000009786	LSM5	69	100.000	ENSRROG00000042782	-	82	100.000	Rhinopithecus_roxellana
ENSUAMG00000009786	LSM5	68	92.308	ENSRROG00000004655	-	57	92.308	Rhinopithecus_roxellana
ENSUAMG00000009786	LSM5	68	92.308	ENSRROG00000023884	-	57	92.308	Rhinopithecus_roxellana
ENSUAMG00000009786	LSM5	68	63.462	ENSSBOG00000034794	-	51	63.462	Saimiri_boliviensis_boliviensis
ENSUAMG00000009786	LSM5	68	100.000	ENSSBOG00000012312	LSM5	81	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000009786	LSM5	68	90.385	ENSSBOG00000019124	-	57	90.385	Saimiri_boliviensis_boliviensis
ENSUAMG00000009786	LSM5	68	84.615	ENSSFOG00015010099	lsm5	57	84.615	Scleropages_formosus
ENSUAMG00000009786	LSM5	68	84.615	ENSSLDG00000025242	lsm5	57	84.615	Seriola_lalandi_dorsalis
ENSUAMG00000009786	LSM5	55	71.429	ENSSLDG00000008014	-	50	71.429	Seriola_lalandi_dorsalis
ENSUAMG00000009786	LSM5	68	90.385	ENSSARG00000003330	LSM5	57	90.385	Sorex_araneus
ENSUAMG00000009786	LSM5	68	88.462	ENSSPUG00000002690	LSM5	57	88.462	Sphenodon_punctatus
ENSUAMG00000009786	LSM5	65	88.000	ENSSSCG00000029661	-	69	88.000	Sus_scrofa
ENSUAMG00000009786	LSM5	68	92.308	ENSSSCG00000026064	-	57	92.308	Sus_scrofa
ENSUAMG00000009786	LSM5	68	86.538	ENSTGUG00000017539	LSM5	57	86.538	Taeniopygia_guttata
ENSUAMG00000009786	LSM5	62	87.500	ENSTNIG00000008695	lsm5	55	87.500	Tetraodon_nigroviridis
ENSUAMG00000009786	LSM5	68	92.308	ENSTBEG00000004876	LSM5	57	92.308	Tupaia_belangeri
ENSUAMG00000009786	LSM5	68	92.308	ENSTTRG00000004237	LSM5	57	92.308	Tursiops_truncatus
ENSUAMG00000009786	LSM5	68	92.308	ENSVPAG00000009985	LSM5	57	92.308	Vicugna_pacos
ENSUAMG00000009786	LSM5	68	92.308	ENSVVUG00000021311	LSM5	57	92.308	Vulpes_vulpes
ENSUAMG00000009786	LSM5	68	86.538	ENSXETG00000026465	lsm5	63	86.538	Xenopus_tropicalis
ENSUAMG00000009786	LSM5	65	92.000	ENSXMAG00000029988	lsm5	55	92.000	Xiphophorus_maculatus