EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000011636 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 3052 bases
Position: chrLZNR01008316.1:62324-65375
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000014502	APOBEC_N	PF08210.11	4.6e-27	1	1
ENSUAMP00000014502	APOBEC_C	PF05240.14	1.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000016271	APOBEC1-201	735	-	ENSUAMP00000014502	244 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000011636's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000011636's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000011636	APOBEC1	56	31.884	ENSUAMG00000011642	AICDA	74	30.702
ENSUAMG00000011636	APOBEC1	52	36.364	ENSUAMG00000004433	-	74	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000011636	APOBEC1	95	80.519	ENSG00000111701	APOBEC1	98	80.519	Homo_sapiens
ENSUAMG00000011636	APOBEC1	97	97.458	ENSAMEG00000007098	APOBEC1	100	97.458	Ailuropoda_melanoleuca
ENSUAMG00000011636	APOBEC1	70	41.520	ENSACAG00000028578	-	93	41.520	Anolis_carolinensis
ENSUAMG00000011636	APOBEC1	99	74.380	ENSANAG00000027743	APOBEC1	98	74.380	Aotus_nancymaae
ENSUAMG00000011636	APOBEC1	95	74.459	ENSBTAG00000014683	APOBEC1	98	74.459	Bos_taurus
ENSUAMG00000011636	APOBEC1	91	77.376	ENSCJAG00000005398	APOBEC1	100	77.376	Callithrix_jacchus
ENSUAMG00000011636	APOBEC1	95	86.266	ENSCAFG00000013901	APOBEC1	99	86.266	Canis_familiaris
ENSUAMG00000011636	APOBEC1	93	86.283	ENSCAFG00020003511	APOBEC1	95	86.283	Canis_lupus_dingo
ENSUAMG00000011636	APOBEC1	97	74.262	ENSCHIG00000011898	APOBEC1	98	74.262	Capra_hircus
ENSUAMG00000011636	APOBEC1	57	83.333	ENSTSYG00000029141	APOBEC1	98	83.333	Carlito_syrichta
ENSUAMG00000011636	APOBEC1	88	68.837	ENSCAPG00000015882	-	100	68.837	Cavia_aperea
ENSUAMG00000011636	APOBEC1	95	66.810	ENSCPOG00000033068	APOBEC1	98	66.810	Cavia_porcellus
ENSUAMG00000011636	APOBEC1	95	77.056	ENSCCAG00000022258	APOBEC1	98	77.056	Cebus_capucinus
ENSUAMG00000011636	APOBEC1	99	77.273	ENSCATG00000021613	APOBEC1	98	77.273	Cercocebus_atys
ENSUAMG00000011636	APOBEC1	92	69.333	ENSCLAG00000014645	APOBEC1	98	69.333	Chinchilla_lanigera
ENSUAMG00000011636	APOBEC1	78	82.105	ENSCSAG00000009817	APOBEC1	99	82.105	Chlorocebus_sabaeus
ENSUAMG00000011636	APOBEC1	89	37.273	ENSCPBG00000014327	-	85	37.273	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	94	40.598	ENSCPBG00000014331	-	94	40.598	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	76	48.128	ENSCPBG00000014335	-	76	48.128	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	80	47.692	ENSCPBG00000014329	-	53	47.692	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	84	45.024	ENSCPBG00000014328	-	92	45.024	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	74	45.161	ENSCPBG00000017398	-	82	45.161	Chrysemys_picta_bellii
ENSUAMG00000011636	APOBEC1	94	79.565	ENSCANG00000038359	APOBEC1	100	79.565	Colobus_angolensis_palliatus
ENSUAMG00000011636	APOBEC1	94	67.249	ENSCGRG00001011130	Apobec1	100	67.249	Cricetulus_griseus_chok1gshd
ENSUAMG00000011636	APOBEC1	94	67.249	ENSCGRG00000008644	Apobec1	100	67.249	Cricetulus_griseus_crigri
ENSUAMG00000011636	APOBEC1	95	76.395	ENSDNOG00000010926	APOBEC1	99	76.395	Dasypus_novemcinctus
ENSUAMG00000011636	APOBEC1	87	66.355	ENSDORG00000023717	Apobec1	100	66.355	Dipodomys_ordii
ENSUAMG00000011636	APOBEC1	96	72.766	ENSETEG00000004867	APOBEC1	99	72.766	Echinops_telfairi
ENSUAMG00000011636	APOBEC1	97	83.051	ENSEASG00005015951	APOBEC1	99	83.051	Equus_asinus_asinus
ENSUAMG00000011636	APOBEC1	78	83.684	ENSECAG00000017163	APOBEC1	99	83.684	Equus_caballus
ENSUAMG00000011636	APOBEC1	89	66.359	ENSEEUG00000009112	-	96	66.359	Erinaceus_europaeus
ENSUAMG00000011636	APOBEC1	85	53.140	ENSEEUG00000007530	-	98	53.140	Erinaceus_europaeus
ENSUAMG00000011636	APOBEC1	95	85.837	ENSFCAG00000009350	APOBEC1	99	85.837	Felis_catus
ENSUAMG00000011636	APOBEC1	58	48.592	ENSFALG00000007257	-	70	48.592	Ficedula_albicollis
ENSUAMG00000011636	APOBEC1	85	58.454	ENSFDAG00000018470	APOBEC1	99	58.454	Fukomys_damarensis
ENSUAMG00000011636	APOBEC1	66	48.765	ENSGAGG00000004947	-	75	53.846	Gopherus_agassizii
ENSUAMG00000011636	APOBEC1	89	40.183	ENSGAGG00000021744	-	85	40.183	Gopherus_agassizii
ENSUAMG00000011636	APOBEC1	88	47.222	ENSGAGG00000011837	-	90	49.219	Gopherus_agassizii
ENSUAMG00000011636	APOBEC1	81	43.415	ENSGAGG00000006624	-	72	43.415	Gopherus_agassizii
ENSUAMG00000011636	APOBEC1	70	40.805	ENSGAGG00000021745	-	64	40.805	Gopherus_agassizii
ENSUAMG00000011636	APOBEC1	94	63.913	ENSHGLG00000001495	APOBEC1	97	63.913	Heterocephalus_glaber_female
ENSUAMG00000011636	APOBEC1	94	62.609	ENSHGLG00100002187	APOBEC1	97	62.609	Heterocephalus_glaber_male
ENSUAMG00000011636	APOBEC1	88	66.512	ENSSTOG00000021971	APOBEC1	100	84.694	Ictidomys_tridecemlineatus
ENSUAMG00000011636	APOBEC1	93	73.451	ENSJJAG00000022108	Apobec1	99	73.451	Jaculus_jaculus
ENSUAMG00000011636	APOBEC1	91	77.477	ENSLAFG00000030837	APOBEC1	99	77.477	Loxodonta_africana
ENSUAMG00000011636	APOBEC1	95	80.087	ENSMFAG00000000277	APOBEC1	99	80.526	Macaca_fascicularis
ENSUAMG00000011636	APOBEC1	95	79.654	ENSMNEG00000029670	APOBEC1	98	79.654	Macaca_nemestrina
ENSUAMG00000011636	APOBEC1	95	80.519	ENSMLEG00000036301	APOBEC1	98	80.519	Mandrillus_leucophaeus
ENSUAMG00000011636	APOBEC1	88	68.837	ENSMAUG00000022167	Apobec1	97	68.837	Mesocricetus_auratus
ENSUAMG00000011636	APOBEC1	95	80.087	ENSMICG00000043645	APOBEC1	97	81.166	Microcebus_murinus
ENSUAMG00000011636	APOBEC1	95	66.953	ENSMODG00000018004	APOBEC1	99	66.953	Monodelphis_domestica
ENSUAMG00000011636	APOBEC1	93	67.982	ENSMUSG00000040613	Apobec1	99	67.982	Mus_musculus
ENSUAMG00000011636	APOBEC1	93	66.228	MGP_PahariEiJ_G0022580	-	99	66.228	Mus_pahari
ENSUAMG00000011636	APOBEC1	93	67.982	MGP_SPRETEiJ_G0029857	Apobec1	99	67.982	Mus_spretus
ENSUAMG00000011636	APOBEC1	95	84.549	ENSMPUG00000017532	APOBEC1	99	84.549	Mustela_putorius_furo
ENSUAMG00000011636	APOBEC1	92	71.875	ENSNGAG00000022607	Apobec1	98	71.875	Nannospalax_galili
ENSUAMG00000011636	APOBEC1	95	80.519	ENSNLEG00000005342	APOBEC1	98	80.519	Nomascus_leucogenys
ENSUAMG00000011636	APOBEC1	95	66.234	ENSMEUG00000013406	APOBEC1	98	66.234	Notamacropus_eugenii
ENSUAMG00000011636	APOBEC1	74	61.878	ENSOPRG00000009508	-	100	61.878	Ochotona_princeps
ENSUAMG00000011636	APOBEC1	98	70.833	ENSOCUG00000025736	APOBEC1	90	70.833	Oryctolagus_cuniculus
ENSUAMG00000011636	APOBEC1	97	80.085	ENSOGAG00000026415	APOBEC1	100	80.085	Otolemur_garnettii
ENSUAMG00000011636	APOBEC1	95	74.026	ENSOARG00000002072	APOBEC1	97	74.026	Ovis_aries
ENSUAMG00000011636	APOBEC1	97	75.424	ENSPPAG00000027657	APOBEC1	100	75.424	Pan_paniscus
ENSUAMG00000011636	APOBEC1	95	86.266	ENSPPRG00000012182	APOBEC1	99	86.266	Panthera_pardus
ENSUAMG00000011636	APOBEC1	95	86.266	ENSPTIG00000020280	APOBEC1	99	86.266	Panthera_tigris_altaica
ENSUAMG00000011636	APOBEC1	95	80.952	ENSPTRG00000004614	APOBEC1	98	80.952	Pan_troglodytes
ENSUAMG00000011636	APOBEC1	95	80.519	ENSPANG00000021027	APOBEC1	98	80.519	Papio_anubis
ENSUAMG00000011636	APOBEC1	55	52.252	ENSPSIG00000012791	-	75	52.252	Pelodiscus_sinensis
ENSUAMG00000011636	APOBEC1	92	42.035	ENSPSIG00000012568	-	95	42.035	Pelodiscus_sinensis
ENSUAMG00000011636	APOBEC1	94	68.996	ENSPEMG00000023841	Apobec1	100	68.996	Peromyscus_maniculatus_bairdii
ENSUAMG00000011636	APOBEC1	95	69.264	ENSPCIG00000023973	APOBEC1	98	69.264	Phascolarctos_cinereus
ENSUAMG00000011636	APOBEC1	99	76.033	ENSPPYG00000004228	APOBEC1	98	76.033	Pongo_abelii
ENSUAMG00000011636	APOBEC1	77	74.332	ENSPCAG00000008733	APOBEC1	100	74.332	Procavia_capensis
ENSUAMG00000011636	APOBEC1	92	80.889	ENSPCOG00000013957	APOBEC1	99	80.889	Propithecus_coquereli
ENSUAMG00000011636	APOBEC1	95	63.636	ENSPVAG00000010709	APOBEC1	98	63.636	Pteropus_vampyrus
ENSUAMG00000011636	APOBEC1	93	66.667	ENSRNOG00000015411	Apobec1	99	66.667	Rattus_norvegicus
ENSUAMG00000011636	APOBEC1	95	80.087	ENSRBIG00000031161	APOBEC1	98	80.087	Rhinopithecus_bieti
ENSUAMG00000011636	APOBEC1	95	80.087	ENSRROG00000033576	APOBEC1	98	80.851	Rhinopithecus_roxellana
ENSUAMG00000011636	APOBEC1	72	76.136	ENSSBOG00000030587	APOBEC1	99	76.136	Saimiri_boliviensis_boliviensis
ENSUAMG00000011636	APOBEC1	93	68.282	ENSSHAG00000008925	APOBEC1	99	68.282	Sarcophilus_harrisii
ENSUAMG00000011636	APOBEC1	70	68.605	ENSSARG00000000032	-	100	68.605	Sorex_araneus
ENSUAMG00000011636	APOBEC1	54	73.485	ENSSARG00000011972	-	100	73.485	Sorex_araneus
ENSUAMG00000011636	APOBEC1	87	42.466	ENSSPUG00000009044	-	83	42.466	Sphenodon_punctatus
ENSUAMG00000011636	APOBEC1	95	80.519	ENSSSCG00000000668	APOBEC1	98	80.519	Sus_scrofa
ENSUAMG00000011636	APOBEC1	59	51.389	ENSTGUG00000013118	-	99	51.389	Taeniopygia_guttata
ENSUAMG00000011636	APOBEC1	91	76.018	ENSTBEG00000010043	APOBEC1	94	76.018	Tupaia_belangeri
ENSUAMG00000011636	APOBEC1	75	74.176	ENSTTRG00000014015	APOBEC1	97	74.176	Tursiops_truncatus
ENSUAMG00000011636	APOBEC1	100	98.770	ENSUMAG00000016552	APOBEC1	100	98.770	Ursus_maritimus
ENSUAMG00000011636	APOBEC1	95	76.190	ENSVPAG00000001343	APOBEC1	98	76.190	Vicugna_pacos
ENSUAMG00000011636	APOBEC1	95	87.124	ENSVVUG00000010522	APOBEC1	99	87.124	Vulpes_vulpes