EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000012158 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 50122 bases
Position: chrLZNR01003109.1:224697-274818
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000015144	RNA_pol_Rpb1_5	PF04998.17	5.8e-104	1	1
ENSUAMP00000015144	RNA_pol_Rpb1_4	PF05000.17	1.4e-25	1	1
ENSUAMP00000015144	RNA_pol_Rpb1_2	PF00623.20	1.9e-36	1	1
ENSUAMP00000015144	RNA_pol_Rpb1_3	PF04983.18	8.3e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000016987	-	3747	-	ENSUAMP00000015144	1248 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000012158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000012158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000012158	-	74	31.548	ENSUAMG00000011283	POLR3A	60	31.548
ENSUAMG00000012158	-	75	31.990	ENSUAMG00000014866	-	51	31.980

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000012158	-	94	90.871	ENSG00000068654	POLR1A	69	91.462	Homo_sapiens
ENSUAMG00000012158	-	52	71.981	ENSAPOG00000017945	polr1a	62	71.981	Acanthochromis_polyacanthus
ENSUAMG00000012158	-	94	98.730	ENSAMEG00000005807	POLR1A	69	98.730	Ailuropoda_melanoleuca
ENSUAMG00000012158	-	94	66.807	ENSACIG00000022147	polr1a	71	65.993	Amphilophus_citrinellus
ENSUAMG00000012158	-	94	67.542	ENSAOCG00000017336	polr1a	74	67.176	Amphiprion_ocellaris
ENSUAMG00000012158	-	94	67.458	ENSAPEG00000016105	polr1a	73	67.091	Amphiprion_percula
ENSUAMG00000012158	-	94	67.679	ENSATEG00000016773	polr1a	69	66.807	Anabas_testudineus
ENSUAMG00000012158	-	94	72.673	ENSAPLG00000013871	POLR1A	80	72.666	Anas_platyrhynchos
ENSUAMG00000012158	-	94	70.752	ENSACAG00000012141	POLR1A	69	69.379	Anolis_carolinensis
ENSUAMG00000012158	-	94	89.932	ENSANAG00000033927	POLR1A	69	90.525	Aotus_nancymaae
ENSUAMG00000012158	-	94	65.821	ENSACLG00000020541	polr1a	71	64.671	Astatotilapia_calliptera
ENSUAMG00000012158	-	94	91.617	ENSBTAG00000006481	POLR1A	69	91.871	Bos_taurus
ENSUAMG00000012158	-	94	42.407	WBGene00012999	rpoa-1	77	57.609	Caenorhabditis_elegans
ENSUAMG00000012158	-	94	89.856	ENSCJAG00000019547	POLR1A	69	90.448	Callithrix_jacchus
ENSUAMG00000012158	-	94	96.867	ENSCAFG00000007613	POLR1A	69	96.867	Canis_familiaris
ENSUAMG00000012158	-	94	96.952	ENSCAFG00020014752	POLR1A	71	95.347	Canis_lupus_dingo
ENSUAMG00000012158	-	94	89.425	ENSCHIG00000018204	POLR1A	68	89.398	Capra_hircus
ENSUAMG00000012158	-	94	88.280	ENSTSYG00000002761	POLR1A	69	88.409	Carlito_syrichta
ENSUAMG00000012158	-	94	84.335	ENSCAPG00000010132	POLR1A	70	84.335	Cavia_aperea
ENSUAMG00000012158	-	94	89.077	ENSCPOG00000012350	POLR1A	69	89.077	Cavia_porcellus
ENSUAMG00000012158	-	94	89.941	ENSCCAG00000019839	POLR1A	69	90.533	Cebus_capucinus
ENSUAMG00000012158	-	94	91.040	ENSCATG00000029786	POLR1A	69	91.631	Cercocebus_atys
ENSUAMG00000012158	-	94	88.748	ENSCLAG00000005187	POLR1A	68	88.748	Chinchilla_lanigera
ENSUAMG00000012158	-	94	90.970	ENSCSAG00000016251	POLR1A	69	91.561	Chlorocebus_sabaeus
ENSUAMG00000012158	-	94	76.291	ENSCPBG00000001115	POLR1A	68	75.953	Chrysemys_picta_bellii
ENSUAMG00000012158	-	60	42.857	ENSCING00000007684	-	99	42.139	Ciona_intestinalis
ENSUAMG00000012158	-	89	60.234	ENSCSAVG00000007184	-	65	60.234	Ciona_savignyi
ENSUAMG00000012158	-	94	86.740	ENSCANG00000031785	POLR1A	68	86.740	Colobus_angolensis_palliatus
ENSUAMG00000012158	-	94	80.492	ENSCGRG00001006651	Polr1a	67	80.694	Cricetulus_griseus_chok1gshd
ENSUAMG00000012158	-	83	86.505	ENSCGRG00000010834	Polr1a	100	86.725	Cricetulus_griseus_crigri
ENSUAMG00000012158	-	92	64.304	ENSCSEG00000020190	polr1a	68	64.217	Cynoglossus_semilaevis
ENSUAMG00000012158	-	94	65.063	ENSCVAG00000020941	polr1a	69	64.603	Cyprinodon_variegatus
ENSUAMG00000012158	-	94	68.782	ENSDARG00000098375	polr1a	69	68.497	Danio_rerio
ENSUAMG00000012158	-	94	82.756	ENSDNOG00000010829	POLR1A	69	82.756	Dasypus_novemcinctus
ENSUAMG00000012158	-	94	89.536	ENSDORG00000008298	Polr1a	68	89.848	Dipodomys_ordii
ENSUAMG00000012158	-	68	51.968	FBgn0019938	RpI1	68	48.947	Drosophila_melanogaster
ENSUAMG00000012158	-	92	67.442	ENSEBUG00000005667	-	77	49.237	Eptatretus_burgeri
ENSUAMG00000012158	-	94	93.745	ENSEASG00005001625	POLR1A	69	94.336	Equus_asinus_asinus
ENSUAMG00000012158	-	94	93.829	ENSECAG00000036306	-	71	94.421	Equus_caballus
ENSUAMG00000012158	-	94	93.829	ENSECAG00000010092	POLR1A	71	94.421	Equus_caballus
ENSUAMG00000012158	-	94	93.829	ENSECAG00000030510	-	71	94.421	Equus_caballus
ENSUAMG00000012158	-	88	95.312	ENSEEUG00000000676	POLR1A	64	95.312	Erinaceus_europaeus
ENSUAMG00000012158	-	94	68.613	ENSELUG00000012769	polr1a	68	66.890	Esox_lucius
ENSUAMG00000012158	-	94	95.597	ENSFCAG00000008966	POLR1A	69	95.597	Felis_catus
ENSUAMG00000012158	-	94	72.119	ENSFALG00000010082	POLR1A	69	70.603	Ficedula_albicollis
ENSUAMG00000012158	-	94	88.409	ENSFDAG00000013726	POLR1A	69	88.494	Fukomys_damarensis
ENSUAMG00000012158	-	94	62.743	ENSFHEG00000005996	polr1a	70	62.785	Fundulus_heteroclitus
ENSUAMG00000012158	-	94	64.407	ENSGMOG00000002230	polr1a	72	64.322	Gadus_morhua
ENSUAMG00000012158	-	81	70.149	ENSGALG00000038160	-	64	70.348	Gallus_gallus
ENSUAMG00000012158	-	94	66.186	ENSGAFG00000015266	polr1a	70	65.770	Gambusia_affinis
ENSUAMG00000012158	-	94	65.210	ENSGACG00000018791	polr1a	69	64.530	Gasterosteus_aculeatus
ENSUAMG00000012158	-	94	76.271	ENSGAGG00000004984	-	76	76.271	Gopherus_agassizii
ENSUAMG00000012158	-	94	90.617	ENSGGOG00000001788	POLR1A	69	91.209	Gorilla_gorilla
ENSUAMG00000012158	-	81	70.572	ENSHBUG00000020021	polr1a	66	70.572	Haplochromis_burtoni
ENSUAMG00000012158	-	94	89.153	ENSHGLG00000006334	POLR1A	69	89.153	Heterocephalus_glaber_female
ENSUAMG00000012158	-	94	88.776	ENSHGLG00100006614	POLR1A	69	88.776	Heterocephalus_glaber_male
ENSUAMG00000012158	-	94	66.082	ENSHCOG00000003345	polr1a	72	66.079	Hippocampus_comes
ENSUAMG00000012158	-	94	68.105	ENSIPUG00000013174	polr1a	69	67.144	Ictalurus_punctatus
ENSUAMG00000012158	-	94	86.005	ENSSTOG00000012580	POLR1A	68	86.102	Ictidomys_tridecemlineatus
ENSUAMG00000012158	-	94	87.658	ENSJJAG00000013113	Polr1a	69	87.658	Jaculus_jaculus
ENSUAMG00000012158	-	94	66.864	ENSKMAG00000007399	polr1a	69	66.271	Kryptolebias_marmoratus
ENSUAMG00000012158	-	94	68.270	ENSLBEG00000015401	polr1a	73	68.523	Labrus_bergylta
ENSUAMG00000012158	-	94	71.271	ENSLOCG00000010881	polr1a	68	71.151	Lepisosteus_oculatus
ENSUAMG00000012158	-	94	89.822	ENSLAFG00000014948	POLR1A	68	90.347	Loxodonta_africana
ENSUAMG00000012158	-	94	91.124	ENSMFAG00000046097	POLR1A	69	91.716	Macaca_fascicularis
ENSUAMG00000012158	-	94	90.955	ENSMMUG00000015815	POLR1A	69	91.547	Macaca_mulatta
ENSUAMG00000012158	-	94	91.124	ENSMNEG00000043313	POLR1A	69	91.716	Macaca_nemestrina
ENSUAMG00000012158	-	94	90.279	ENSMLEG00000042428	POLR1A	69	90.871	Mandrillus_leucophaeus
ENSUAMG00000012158	-	94	67.316	ENSMAMG00000016565	polr1a	69	67.231	Mastacembelus_armatus
ENSUAMG00000012158	-	94	67.062	ENSMZEG00005004915	polr1a	69	66.076	Maylandia_zebra
ENSUAMG00000012158	-	94	69.211	ENSMGAG00000013111	POLR1A	68	69.381	Meleagris_gallopavo
ENSUAMG00000012158	-	94	87.871	ENSMAUG00000008497	Polr1a	75	87.976	Mesocricetus_auratus
ENSUAMG00000012158	-	94	91.554	ENSMICG00000000757	POLR1A	69	91.385	Microcebus_murinus
ENSUAMG00000012158	-	96	86.739	ENSMOCG00000000122	Polr1a	69	86.844	Microtus_ochrogaster
ENSUAMG00000012158	-	94	65.593	ENSMMOG00000010216	polr1a	69	66.102	Mola_mola
ENSUAMG00000012158	-	94	73.077	ENSMODG00000009335	POLR1A	69	72.742	Monodelphis_domestica
ENSUAMG00000012158	-	94	65.852	ENSMALG00000013363	polr1a	74	65.992	Monopterus_albus
ENSUAMG00000012158	-	94	86.791	MGP_CAROLIEiJ_G0028494	Polr1a	100	82.933	Mus_caroli
ENSUAMG00000012158	-	94	86.876	ENSMUSG00000049553	Polr1a	99	82.667	Mus_musculus
ENSUAMG00000012158	-	94	87.553	MGP_PahariEiJ_G0022230	Polr1a	100	83.600	Mus_pahari
ENSUAMG00000012158	-	94	84.488	MGP_SPRETEiJ_G0029499	Polr1a	100	83.200	Mus_spretus
ENSUAMG00000012158	-	94	95.936	ENSMPUG00000009135	POLR1A	69	95.936	Mustela_putorius_furo
ENSUAMG00000012158	-	94	91.109	ENSMLUG00000015723	POLR1A	68	91.109	Myotis_lucifugus
ENSUAMG00000012158	-	94	86.949	ENSNGAG00000017907	Polr1a	68	87.394	Nannospalax_galili
ENSUAMG00000012158	-	94	66.949	ENSNBRG00000000519	polr1a	69	66.245	Neolamprologus_brichardi
ENSUAMG00000012158	-	94	87.909	ENSNLEG00000002264	POLR1A	85	86.957	Nomascus_leucogenys
ENSUAMG00000012158	-	69	92.126	ENSMEUG00000011665	-	51	92.126	Notamacropus_eugenii
ENSUAMG00000012158	-	93	83.391	ENSOPRG00000008269	POLR1A	68	83.046	Ochotona_princeps
ENSUAMG00000012158	-	94	88.748	ENSODEG00000003542	POLR1A	69	88.917	Octodon_degus
ENSUAMG00000012158	-	94	67.712	ENSONIG00000015895	polr1a	68	66.835	Oreochromis_niloticus
ENSUAMG00000012158	-	94	89.949	ENSOCUG00000010138	POLR1A	69	90.203	Oryctolagus_cuniculus
ENSUAMG00000012158	-	94	65.424	ENSORLG00000008753	polr1a	69	65.763	Oryzias_latipes
ENSUAMG00000012158	-	94	65.085	ENSORLG00020020726	polr1a	70	65.424	Oryzias_latipes_hni
ENSUAMG00000012158	-	94	64.153	ENSORLG00015016071	polr1a	73	64.576	Oryzias_latipes_hsok
ENSUAMG00000012158	-	94	90.110	ENSOGAG00000004031	POLR1A	69	90.279	Otolemur_garnettii
ENSUAMG00000012158	-	94	91.293	ENSOARG00000020601	POLR1A	69	91.293	Ovis_aries
ENSUAMG00000012158	-	94	90.533	ENSPPAG00000042450	POLR1A	69	91.124	Pan_paniscus
ENSUAMG00000012158	-	94	96.020	ENSPPRG00000006702	POLR1A	69	96.020	Panthera_pardus
ENSUAMG00000012158	-	94	95.282	ENSPTIG00000018783	POLR1A	69	95.282	Panthera_tigris_altaica
ENSUAMG00000012158	-	94	90.786	ENSPTRG00000012147	POLR1A	69	91.209	Pan_troglodytes
ENSUAMG00000012158	-	94	90.871	ENSPANG00000025908	POLR1A	69	91.462	Papio_anubis
ENSUAMG00000012158	-	94	67.119	ENSPKIG00000005468	polr1a	72	66.695	Paramormyrops_kingsleyae
ENSUAMG00000012158	-	87	72.601	ENSPSIG00000009321	-	99	72.509	Pelodiscus_sinensis
ENSUAMG00000012158	-	94	87.193	ENSPEMG00000022224	Polr1a	68	87.722	Peromyscus_maniculatus_bairdii
ENSUAMG00000012158	-	88	79.048	ENSPCIG00000004222	POLR1A	66	78.480	Phascolarctos_cinereus
ENSUAMG00000012158	-	94	65.625	ENSPFOG00000005025	polr1a	69	65.622	Poecilia_formosa
ENSUAMG00000012158	-	94	65.818	ENSPLAG00000021389	polr1a	69	65.818	Poecilia_latipinna
ENSUAMG00000012158	-	94	65.372	ENSPMEG00000006463	polr1a	70	64.657	Poecilia_mexicana
ENSUAMG00000012158	-	94	66.215	ENSPREG00000002389	polr1a	71	65.122	Poecilia_reticulata
ENSUAMG00000012158	-	94	90.702	ENSPPYG00000012217	POLR1A	69	91.293	Pongo_abelii
ENSUAMG00000012158	-	90	92.462	ENSPCAG00000011582	POLR1A	65	92.462	Procavia_capensis
ENSUAMG00000012158	-	94	91.301	ENSPCOG00000026987	POLR1A	69	91.216	Propithecus_coquereli
ENSUAMG00000012158	-	94	87.753	ENSPVAG00000012674	POLR1A	69	88.429	Pteropus_vampyrus
ENSUAMG00000012158	-	94	67.062	ENSPNYG00000000026	polr1a	69	66.076	Pundamilia_nyererei
ENSUAMG00000012158	-	94	68.776	ENSPNAG00000019223	polr1a	73	68.266	Pygocentrus_nattereri
ENSUAMG00000012158	-	94	87.956	ENSRNOG00000009545	Polr1a	68	88.230	Rattus_norvegicus
ENSUAMG00000012158	-	94	90.295	ENSRBIG00000028335	POLR1A	69	90.886	Rhinopithecus_bieti
ENSUAMG00000012158	-	94	90.295	ENSRROG00000031473	POLR1A	78	88.351	Rhinopithecus_roxellana
ENSUAMG00000012158	-	94	37.838	YOR341W	RPA190	65	37.669	Saccharomyces_cerevisiae
ENSUAMG00000012158	-	94	89.518	ENSSBOG00000030262	POLR1A	69	90.110	Saimiri_boliviensis_boliviensis
ENSUAMG00000012158	-	94	73.412	ENSSHAG00000014739	POLR1A	68	73.412	Sarcophilus_harrisii
ENSUAMG00000012158	-	94	67.966	ENSSFOG00015019716	polr1a	69	67.966	Scleropages_formosus
ENSUAMG00000012158	-	94	67.117	ENSSMAG00000014342	polr1a	72	66.302	Scophthalmus_maximus
ENSUAMG00000012158	-	94	68.359	ENSSDUG00000014631	polr1a	69	68.359	Seriola_dumerili
ENSUAMG00000012158	-	94	68.332	ENSSLDG00000024095	polr1a	71	67.674	Seriola_lalandi_dorsalis
ENSUAMG00000012158	-	72	98.936	ENSSARG00000003136	-	53	98.936	Sorex_araneus
ENSUAMG00000012158	-	87	78.974	ENSSPUG00000004215	POLR1A	65	78.974	Sphenodon_punctatus
ENSUAMG00000012158	-	52	71.207	ENSSPAG00000016341	polr1a	57	70.859	Stegastes_partitus
ENSUAMG00000012158	-	71	93.018	ENSSSCG00000008226	POLR1A	62	92.986	Sus_scrofa
ENSUAMG00000012158	-	94	71.151	ENSTGUG00000010704	POLR1A	69	70.479	Taeniopygia_guttata
ENSUAMG00000012158	-	94	64.524	ENSTRUG00000002210	polr1a	69	63.812	Takifugu_rubripes
ENSUAMG00000012158	-	94	62.183	ENSTNIG00000010116	polr1a	68	62.098	Tetraodon_nigroviridis
ENSUAMG00000012158	-	72	96.644	ENSTBEG00000008646	POLR1A	52	96.644	Tupaia_belangeri
ENSUAMG00000012158	-	94	86.198	ENSTTRG00000008597	POLR1A	69	86.029	Tursiops_truncatus
ENSUAMG00000012158	-	95	98.051	ENSUMAG00000006700	POLR1A	72	98.051	Ursus_maritimus
ENSUAMG00000012158	-	94	96.698	ENSVVUG00000001245	POLR1A	69	96.698	Vulpes_vulpes
ENSUAMG00000012158	-	94	68.913	ENSXETG00000001952	polr1a	69	68.913	Xenopus_tropicalis
ENSUAMG00000012158	-	94	66.582	ENSXMAG00000004032	polr1a	69	66.328	Xiphophorus_maculatus