EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000012309 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 37198 bases
Position: chrLZNR01013058.1:46228-83425
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000015368	RRM_1	PF00076.22	9e-33	1	2
ENSUAMP00000015368	RRM_1	PF00076.22	9e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000017225	PSPC1-201	1309	-	ENSUAMP00000015368	349 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000012309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000012309's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000012309	PSPC1	83	74.394	ENSUAMG00000008220	NONO	66	71.336
ENSUAMG00000012309	PSPC1	57	74.372	ENSUAMG00000026758	SFPQ	59	66.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000012309	PSPC1	100	98.575	ENSG00000121390	PSPC1	100	97.984	Homo_sapiens
ENSUAMG00000012309	PSPC1	82	81.754	ENSAPOG00000015946	pspc1	77	68.882	Acanthochromis_polyacanthus
ENSUAMG00000012309	PSPC1	100	100.000	ENSAMEG00000017420	PSPC1	67	100.000	Ailuropoda_melanoleuca
ENSUAMG00000012309	PSPC1	75	78.244	ENSACIG00000018695	pspc1	53	78.764	Amphilophus_citrinellus
ENSUAMG00000012309	PSPC1	82	81.053	ENSAOCG00000005279	pspc1	71	72.131	Amphiprion_ocellaris
ENSUAMG00000012309	PSPC1	82	81.053	ENSAPEG00000015927	pspc1	71	72.131	Amphiprion_percula
ENSUAMG00000012309	PSPC1	74	78.846	ENSATEG00000004878	pspc1	51	78.846	Anabas_testudineus
ENSUAMG00000012309	PSPC1	66	96.970	ENSAPLG00000006246	PSPC1	57	96.970	Anas_platyrhynchos
ENSUAMG00000012309	PSPC1	83	76.207	ENSAPLG00000003643	SFPQ	56	76.207	Anas_platyrhynchos
ENSUAMG00000012309	PSPC1	83	98.264	ENSACAG00000002093	PSPC1	66	86.158	Anolis_carolinensis
ENSUAMG00000012309	PSPC1	100	98.854	ENSANAG00000000059	PSPC1	89	98.854	Aotus_nancymaae
ENSUAMG00000012309	PSPC1	92	65.970	ENSACLG00000027220	pspc1	69	65.970	Astatotilapia_calliptera
ENSUAMG00000012309	PSPC1	81	83.099	ENSAMXG00000036881	pspc1	58	78.526	Astyanax_mexicanus
ENSUAMG00000012309	PSPC1	99	95.402	ENSBTAG00000003934	PSPC1	67	94.269	Bos_taurus
ENSUAMG00000012309	PSPC1	100	98.854	ENSCJAG00000004554	PSPC1	67	98.854	Callithrix_jacchus
ENSUAMG00000012309	PSPC1	100	99.427	ENSCAFG00020002009	PSPC1	89	99.427	Canis_lupus_dingo
ENSUAMG00000012309	PSPC1	99	95.402	ENSCHIG00000016708	PSPC1	67	94.269	Capra_hircus
ENSUAMG00000012309	PSPC1	57	100.000	ENSTSYG00000032882	PSPC1	50	92.202	Carlito_syrichta
ENSUAMG00000012309	PSPC1	100	97.421	ENSCPOG00000000395	PSPC1	89	97.421	Cavia_porcellus
ENSUAMG00000012309	PSPC1	100	98.854	ENSCCAG00000033498	PSPC1	67	98.854	Cebus_capucinus
ENSUAMG00000012309	PSPC1	100	98.575	ENSCATG00000036434	PSPC1	87	99.048	Cercocebus_atys
ENSUAMG00000012309	PSPC1	83	83.162	ENSCLAG00000005241	PSPC1	61	83.162	Chinchilla_lanigera
ENSUAMG00000012309	PSPC1	100	96.011	ENSCHOG00000008913	PSPC1	67	96.011	Choloepus_hoffmanni
ENSUAMG00000012309	PSPC1	98	86.080	ENSCPBG00000020859	PSPC1	66	87.536	Chrysemys_picta_bellii
ENSUAMG00000012309	PSPC1	80	61.786	ENSCSAVG00000003533	-	59	57.419	Ciona_savignyi
ENSUAMG00000012309	PSPC1	65	100.000	ENSCANG00000018948	PSPC1	75	100.000	Colobus_angolensis_palliatus
ENSUAMG00000012309	PSPC1	100	96.866	ENSCGRG00001018368	Pspc1	67	96.866	Cricetulus_griseus_chok1gshd
ENSUAMG00000012309	PSPC1	100	96.866	ENSCGRG00000011724	Pspc1	67	96.866	Cricetulus_griseus_crigri
ENSUAMG00000012309	PSPC1	80	80.000	ENSCVAG00000007679	-	69	68.362	Cyprinodon_variegatus
ENSUAMG00000012309	PSPC1	99	73.143	ENSDARG00000006621	pspc1	58	83.550	Danio_rerio
ENSUAMG00000012309	PSPC1	100	96.296	ENSDNOG00000011078	PSPC1	67	96.296	Dasypus_novemcinctus
ENSUAMG00000012309	PSPC1	99	92.571	ENSDORG00000016050	Pspc1	67	91.738	Dipodomys_ordii
ENSUAMG00000012309	PSPC1	81	76.408	ENSEBUG00000003964	-	52	75.517	Eptatretus_burgeri
ENSUAMG00000012309	PSPC1	92	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSUAMG00000012309	PSPC1	100	98.281	ENSEASG00005000119	PSPC1	89	98.281	Equus_asinus_asinus
ENSUAMG00000012309	PSPC1	100	98.281	ENSECAG00000017286	PSPC1	89	98.281	Equus_caballus
ENSUAMG00000012309	PSPC1	92	82.812	ENSEEUG00000011288	-	61	82.500	Erinaceus_europaeus
ENSUAMG00000012309	PSPC1	99	72.472	ENSELUG00000003746	pspc1	86	72.145	Esox_lucius
ENSUAMG00000012309	PSPC1	100	99.427	ENSFCAG00000027841	PSPC1	89	99.427	Felis_catus
ENSUAMG00000012309	PSPC1	84	97.603	ENSFALG00000008750	PSPC1	66	87.143	Ficedula_albicollis
ENSUAMG00000012309	PSPC1	100	94.556	ENSFDAG00000002617	PSPC1	66	94.556	Fukomys_damarensis
ENSUAMG00000012309	PSPC1	83	82.986	ENSGMOG00000015074	pspc1	56	82.986	Gadus_morhua
ENSUAMG00000012309	PSPC1	82	98.606	ENSGALG00000017142	PSPC1	66	88.439	Gallus_gallus
ENSUAMG00000012309	PSPC1	82	78.947	ENSGAFG00000006327	pspc1	60	78.201	Gambusia_affinis
ENSUAMG00000012309	PSPC1	82	74.825	ENSGACG00000014901	pspc1	82	74.403	Gasterosteus_aculeatus
ENSUAMG00000012309	PSPC1	98	85.755	ENSGAGG00000019164	PSPC1	66	87.536	Gopherus_agassizii
ENSUAMG00000012309	PSPC1	100	98.575	ENSGGOG00000003414	PSPC1	89	98.575	Gorilla_gorilla
ENSUAMG00000012309	PSPC1	99	68.994	ENSHBUG00000001139	pspc1	69	68.698	Haplochromis_burtoni
ENSUAMG00000012309	PSPC1	100	97.994	ENSHGLG00000018811	PSPC1	67	97.994	Heterocephalus_glaber_female
ENSUAMG00000012309	PSPC1	99	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSUAMG00000012309	PSPC1	83	73.958	ENSHCOG00000013251	pspc1	65	74.048	Hippocampus_comes
ENSUAMG00000012309	PSPC1	99	75.216	ENSIPUG00000013192	pspc1	71	71.955	Ictalurus_punctatus
ENSUAMG00000012309	PSPC1	100	98.006	ENSSTOG00000026833	PSPC1	89	98.006	Ictidomys_tridecemlineatus
ENSUAMG00000012309	PSPC1	100	97.151	ENSJJAG00000018334	Pspc1	67	97.151	Jaculus_jaculus
ENSUAMG00000012309	PSPC1	83	69.204	ENSKMAG00000013525	-	79	62.248	Kryptolebias_marmoratus
ENSUAMG00000012309	PSPC1	93	72.699	ENSLBEG00000004474	pspc1	65	75.325	Labrus_bergylta
ENSUAMG00000012309	PSPC1	99	75.069	ENSLACG00000010762	PSPC1	66	75.623	Latimeria_chalumnae
ENSUAMG00000012309	PSPC1	82	88.462	ENSLOCG00000010832	pspc1	66	77.011	Lepisosteus_oculatus
ENSUAMG00000012309	PSPC1	99	95.714	ENSLAFG00000010968	PSPC1	67	96.011	Loxodonta_africana
ENSUAMG00000012309	PSPC1	100	98.575	ENSMFAG00000032728	PSPC1	88	99.048	Macaca_fascicularis
ENSUAMG00000012309	PSPC1	100	98.575	ENSMMUG00000020262	PSPC1	85	99.048	Macaca_mulatta
ENSUAMG00000012309	PSPC1	100	98.575	ENSMNEG00000027401	PSPC1	75	98.575	Macaca_nemestrina
ENSUAMG00000012309	PSPC1	100	100.000	ENSMLEG00000039043	PSPC1	60	100.000	Mandrillus_leucophaeus
ENSUAMG00000012309	PSPC1	82	79.371	ENSMAMG00000004333	pspc1	55	78.893	Mastacembelus_armatus
ENSUAMG00000012309	PSPC1	92	65.970	ENSMZEG00005005726	pspc1	69	65.970	Maylandia_zebra
ENSUAMG00000012309	PSPC1	67	96.567	ENSMGAG00000015134	PSPC1	57	96.567	Meleagris_gallopavo
ENSUAMG00000012309	PSPC1	98	92.420	ENSMAUG00000021067	Pspc1	71	96.584	Mesocricetus_auratus
ENSUAMG00000012309	PSPC1	100	98.006	ENSMICG00000013970	PSPC1	89	98.006	Microcebus_murinus
ENSUAMG00000012309	PSPC1	100	97.159	ENSMOCG00000006060	Pspc1	67	97.159	Microtus_ochrogaster
ENSUAMG00000012309	PSPC1	100	97.151	ENSMODG00000008029	PSPC1	57	97.151	Monodelphis_domestica
ENSUAMG00000012309	PSPC1	82	78.322	ENSMALG00000008914	pspc1	61	73.802	Monopterus_albus
ENSUAMG00000012309	PSPC1	100	97.151	MGP_CAROLIEiJ_G0019341	Pspc1	84	91.837	Mus_caroli
ENSUAMG00000012309	PSPC1	100	97.151	ENSMUSG00000021938	Pspc1	83	91.837	Mus_musculus
ENSUAMG00000012309	PSPC1	100	97.151	MGP_PahariEiJ_G0030359	Pspc1	84	91.837	Mus_pahari
ENSUAMG00000012309	PSPC1	100	96.866	MGP_SPRETEiJ_G0020232	Pspc1	84	91.837	Mus_spretus
ENSUAMG00000012309	PSPC1	100	99.140	ENSMPUG00000013347	PSPC1	67	99.140	Mustela_putorius_furo
ENSUAMG00000012309	PSPC1	100	96.307	ENSMLUG00000017663	PSPC1	67	96.307	Myotis_lucifugus
ENSUAMG00000012309	PSPC1	100	97.151	ENSNGAG00000011271	Pspc1	67	97.151	Nannospalax_galili
ENSUAMG00000012309	PSPC1	92	67.365	ENSNBRG00000014059	pspc1	79	67.365	Neolamprologus_brichardi
ENSUAMG00000012309	PSPC1	100	98.291	ENSNLEG00000001294	PSPC1	67	98.291	Nomascus_leucogenys
ENSUAMG00000012309	PSPC1	92	86.875	ENSODEG00000007817	-	60	85.000	Octodon_degus
ENSUAMG00000012309	PSPC1	98	92.398	ENSODEG00000019012	-	67	91.884	Octodon_degus
ENSUAMG00000012309	PSPC1	99	69.274	ENSONIG00000012010	pspc1	68	68.975	Oreochromis_niloticus
ENSUAMG00000012309	PSPC1	65	100.000	ENSOANG00000009017	-	57	100.000	Ornithorhynchus_anatinus
ENSUAMG00000012309	PSPC1	99	68.895	ENSOANG00000011381	-	67	68.895	Ornithorhynchus_anatinus
ENSUAMG00000012309	PSPC1	100	97.436	ENSOCUG00000006153	PSPC1	67	97.436	Oryctolagus_cuniculus
ENSUAMG00000012309	PSPC1	82	81.469	ENSORLG00000004232	-	63	76.025	Oryzias_latipes
ENSUAMG00000012309	PSPC1	82	81.818	ENSORLG00020000578	PSPC1	63	76.341	Oryzias_latipes_hni
ENSUAMG00000012309	PSPC1	82	81.469	ENSORLG00015017480	pspc1	63	76.025	Oryzias_latipes_hsok
ENSUAMG00000012309	PSPC1	60	82.857	ENSOMEG00000003779	pspc1	96	82.857	Oryzias_melastigma
ENSUAMG00000012309	PSPC1	100	98.006	ENSOGAG00000012643	PSPC1	67	98.006	Otolemur_garnettii
ENSUAMG00000012309	PSPC1	99	88.761	ENSOARG00000014163	PSPC1	64	88.761	Ovis_aries
ENSUAMG00000012309	PSPC1	84	99.658	ENSPPAG00000009836	PSPC1	86	95.793	Pan_paniscus
ENSUAMG00000012309	PSPC1	100	99.427	ENSPPRG00000008833	PSPC1	67	99.427	Panthera_pardus
ENSUAMG00000012309	PSPC1	100	76.218	ENSPTIG00000016917	PSPC1	64	76.218	Panthera_tigris_altaica
ENSUAMG00000012309	PSPC1	100	98.575	ENSPTRG00000005677	PSPC1	93	96.119	Pan_troglodytes
ENSUAMG00000012309	PSPC1	100	98.860	ENSPANG00000001992	PSPC1	87	99.365	Papio_anubis
ENSUAMG00000012309	PSPC1	99	76.301	ENSPKIG00000003578	pspc1	62	78.899	Paramormyrops_kingsleyae
ENSUAMG00000012309	PSPC1	98	85.112	ENSPSIG00000005168	PSPC1	66	86.705	Pelodiscus_sinensis
ENSUAMG00000012309	PSPC1	91	69.018	ENSPMGG00000015135	pspc1	87	70.476	Periophthalmus_magnuspinnatus
ENSUAMG00000012309	PSPC1	100	97.151	ENSPEMG00000015214	Pspc1	67	97.151	Peromyscus_maniculatus_bairdii
ENSUAMG00000012309	PSPC1	73	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSUAMG00000012309	PSPC1	99	97.429	ENSPCIG00000017680	PSPC1	67	97.429	Phascolarctos_cinereus
ENSUAMG00000012309	PSPC1	95	72.059	ENSPFOG00000003362	pspc1	62	74.528	Poecilia_formosa
ENSUAMG00000012309	PSPC1	98	70.056	ENSPLAG00000011540	pspc1	62	74.528	Poecilia_latipinna
ENSUAMG00000012309	PSPC1	98	69.492	ENSPMEG00000008322	pspc1	62	73.899	Poecilia_mexicana
ENSUAMG00000012309	PSPC1	98	69.209	ENSPREG00000007786	pspc1	62	73.585	Poecilia_reticulata
ENSUAMG00000012309	PSPC1	100	98.575	ENSPPYG00000005186	PSPC1	74	98.575	Pongo_abelii
ENSUAMG00000012309	PSPC1	100	98.006	ENSPCOG00000014364	PSPC1	70	98.006	Propithecus_coquereli
ENSUAMG00000012309	PSPC1	100	97.421	ENSPVAG00000005036	PSPC1	67	97.421	Pteropus_vampyrus
ENSUAMG00000012309	PSPC1	92	66.269	ENSPNYG00000008893	pspc1	69	66.269	Pundamilia_nyererei
ENSUAMG00000012309	PSPC1	99	74.857	ENSPNAG00000016511	pspc1	75	74.504	Pygocentrus_nattereri
ENSUAMG00000012309	PSPC1	100	97.151	ENSRNOG00000020782	Pspc1	75	97.151	Rattus_norvegicus
ENSUAMG00000012309	PSPC1	90	99.365	ENSRBIG00000036057	PSPC1	88	99.365	Rhinopithecus_bieti
ENSUAMG00000012309	PSPC1	100	98.860	ENSRROG00000036334	PSPC1	89	98.860	Rhinopithecus_roxellana
ENSUAMG00000012309	PSPC1	67	97.854	ENSSBOG00000028172	PSPC1	76	97.854	Saimiri_boliviensis_boliviensis
ENSUAMG00000012309	PSPC1	97	91.228	ENSSHAG00000004696	PSPC1	62	95.679	Sarcophilus_harrisii
ENSUAMG00000012309	PSPC1	83	86.458	ENSSFOG00015001395	pspc1	62	85.911	Scleropages_formosus
ENSUAMG00000012309	PSPC1	87	76.974	ENSSMAG00000001761	pspc1	76	76.547	Scophthalmus_maximus
ENSUAMG00000012309	PSPC1	82	81.818	ENSSDUG00000010651	pspc1	54	81.315	Seriola_dumerili
ENSUAMG00000012309	PSPC1	74	80.385	ENSSLDG00000004284	pspc1	68	68.263	Seriola_lalandi_dorsalis
ENSUAMG00000012309	PSPC1	92	95.312	ENSSARG00000000888	PSPC1	61	95.625	Sorex_araneus
ENSUAMG00000012309	PSPC1	91	83.686	ENSSPUG00000008550	PSPC1	64	85.220	Sphenodon_punctatus
ENSUAMG00000012309	PSPC1	82	80.769	ENSSPAG00000001921	pspc1	63	72.271	Stegastes_partitus
ENSUAMG00000012309	PSPC1	100	96.286	ENSSSCG00000009569	PSPC1	90	96.286	Sus_scrofa
ENSUAMG00000012309	PSPC1	84	97.619	ENSTGUG00000011295	PSPC1	63	97.619	Taeniopygia_guttata
ENSUAMG00000012309	PSPC1	92	66.261	ENSTRUG00000011335	pspc1	56	71.972	Takifugu_rubripes
ENSUAMG00000012309	PSPC1	82	72.727	ENSTNIG00000010358	pspc1	66	68.770	Tetraodon_nigroviridis
ENSUAMG00000012309	PSPC1	99	85.345	ENSTBEG00000002361	PSPC1	68	85.143	Tupaia_belangeri
ENSUAMG00000012309	PSPC1	100	96.848	ENSTTRG00000003343	PSPC1	67	96.848	Tursiops_truncatus
ENSUAMG00000012309	PSPC1	90	99.683	ENSUMAG00000013993	PSPC1	88	99.683	Ursus_maritimus
ENSUAMG00000012309	PSPC1	65	100.000	ENSVPAG00000010029	PSPC1	57	100.000	Vicugna_pacos
ENSUAMG00000012309	PSPC1	100	99.427	ENSVVUG00000006414	PSPC1	91	99.427	Vulpes_vulpes
ENSUAMG00000012309	PSPC1	99	67.697	ENSXCOG00000017438	pspc1	75	72.956	Xiphophorus_couchianus
ENSUAMG00000012309	PSPC1	99	67.978	ENSXMAG00000007929	pspc1	75	73.270	Xiphophorus_maculatus