EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000012736 (Gene tree)
Gene ID: -
Gene Symbol: RPUSD1
Alias: C16orf40|MGC19600|RLUCL
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 2792 bases
Position: chrLZNR01000029.1:127200-129991
Accession: 14173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000015950	PseudoU_synth_2	PF00849.22	3.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000017875	RPUSD1-201	2009	-	ENSUAMP00000015950	302 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000012736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000012736's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000012736	RPUSD1	100	80.128	ENSG00000007376	RPUSD1	100	85.119	Homo_sapiens
ENSUAMG00000012736	RPUSD1	98	58.940	ENSAPOG00000022221	rpusd1	98	58.940	Acanthochromis_polyacanthus
ENSUAMG00000012736	RPUSD1	100	96.689	ENSAMEG00000007461	RPUSD1	100	96.689	Ailuropoda_melanoleuca
ENSUAMG00000012736	RPUSD1	98	56.863	ENSACIG00000015863	rpusd1	98	57.190	Amphilophus_citrinellus
ENSUAMG00000012736	RPUSD1	98	57.049	ENSAOCG00000021975	rpusd1	95	56.721	Amphiprion_ocellaris
ENSUAMG00000012736	RPUSD1	98	57.377	ENSAPEG00000001316	rpusd1	95	57.049	Amphiprion_percula
ENSUAMG00000012736	RPUSD1	79	67.364	ENSATEG00000002984	rpusd1	98	57.377	Anabas_testudineus
ENSUAMG00000012736	RPUSD1	78	61.066	ENSAPLG00000012316	RPUSD1	99	61.317	Anas_platyrhynchos
ENSUAMG00000012736	RPUSD1	99	68.421	ENSACAG00000008953	RPUSD1	100	67.881	Anolis_carolinensis
ENSUAMG00000012736	RPUSD1	100	81.090	ENSANAG00000024709	RPUSD1	100	80.449	Aotus_nancymaae
ENSUAMG00000012736	RPUSD1	98	57.097	ENSACLG00000013692	rpusd1	98	58.306	Astatotilapia_calliptera
ENSUAMG00000012736	RPUSD1	99	60.333	ENSAMXG00000019802	rpusd1	100	60.333	Astyanax_mexicanus
ENSUAMG00000012736	RPUSD1	100	86.039	ENSBTAG00000000179	RPUSD1	100	85.714	Bos_taurus
ENSUAMG00000012736	RPUSD1	100	80.449	ENSCJAG00000012253	RPUSD1	100	80.449	Callithrix_jacchus
ENSUAMG00000012736	RPUSD1	100	95.364	ENSCAFG00000019614	RPUSD1	100	95.364	Canis_familiaris
ENSUAMG00000012736	RPUSD1	100	95.364	ENSCAFG00020008891	RPUSD1	100	95.364	Canis_lupus_dingo
ENSUAMG00000012736	RPUSD1	100	85.714	ENSCHIG00000012872	RPUSD1	100	85.390	Capra_hircus
ENSUAMG00000012736	RPUSD1	100	81.788	ENSTSYG00000036934	RPUSD1	100	81.788	Carlito_syrichta
ENSUAMG00000012736	RPUSD1	100	83.660	ENSCAPG00000014219	RPUSD1	100	83.333	Cavia_aperea
ENSUAMG00000012736	RPUSD1	100	83.660	ENSCPOG00000034604	RPUSD1	100	83.333	Cavia_porcellus
ENSUAMG00000012736	RPUSD1	100	81.731	ENSCCAG00000034385	RPUSD1	100	80.769	Cebus_capucinus
ENSUAMG00000012736	RPUSD1	100	80.769	ENSCATG00000042983	RPUSD1	100	81.090	Cercocebus_atys
ENSUAMG00000012736	RPUSD1	100	82.353	ENSCLAG00000013966	RPUSD1	100	81.699	Chinchilla_lanigera
ENSUAMG00000012736	RPUSD1	100	80.769	ENSCSAG00000012121	RPUSD1	100	80.769	Chlorocebus_sabaeus
ENSUAMG00000012736	RPUSD1	99	65.789	ENSCPBG00000021101	RPUSD1	99	65.461	Chrysemys_picta_bellii
ENSUAMG00000012736	RPUSD1	90	84.133	ENSCANG00000028576	RPUSD1	96	84.387	Colobus_angolensis_palliatus
ENSUAMG00000012736	RPUSD1	100	82.566	ENSCGRG00001014253	Rpusd1	100	81.848	Cricetulus_griseus_chok1gshd
ENSUAMG00000012736	RPUSD1	100	82.566	ENSCGRG00000017995	Rpusd1	100	81.848	Cricetulus_griseus_crigri
ENSUAMG00000012736	RPUSD1	99	57.191	ENSCSEG00000018512	rpusd1	100	57.191	Cynoglossus_semilaevis
ENSUAMG00000012736	RPUSD1	98	59.000	ENSCVAG00000022746	rpusd1	98	58.667	Cyprinodon_variegatus
ENSUAMG00000012736	RPUSD1	99	62.667	ENSDARG00000060192	rpusd1	100	62.667	Danio_rerio
ENSUAMG00000012736	RPUSD1	100	79.233	ENSDNOG00000003721	RPUSD1	100	82.143	Dasypus_novemcinctus
ENSUAMG00000012736	RPUSD1	100	84.818	ENSDORG00000026656	Rpusd1	100	86.469	Dipodomys_ordii
ENSUAMG00000012736	RPUSD1	97	46.278	ENSEBUG00000008767	rpusd1	93	46.278	Eptatretus_burgeri
ENSUAMG00000012736	RPUSD1	100	82.911	ENSEASG00005018421	RPUSD1	76	82.911	Equus_asinus_asinus
ENSUAMG00000012736	RPUSD1	84	59.843	ENSELUG00000014307	rpusd1	88	53.055	Esox_lucius
ENSUAMG00000012736	RPUSD1	100	92.053	ENSFCAG00000010359	RPUSD1	100	92.053	Felis_catus
ENSUAMG00000012736	RPUSD1	99	66.887	ENSFALG00000003211	RPUSD1	100	66.887	Ficedula_albicollis
ENSUAMG00000012736	RPUSD1	100	83.007	ENSFDAG00000013398	RPUSD1	100	82.680	Fukomys_damarensis
ENSUAMG00000012736	RPUSD1	98	58.086	ENSFHEG00000004736	rpusd1	98	56.436	Fundulus_heteroclitus
ENSUAMG00000012736	RPUSD1	84	62.451	ENSGMOG00000010756	rpusd1	98	55.592	Gadus_morhua
ENSUAMG00000012736	RPUSD1	99	66.883	ENSGALG00000005315	RPUSD1	100	66.558	Gallus_gallus
ENSUAMG00000012736	RPUSD1	98	58.940	ENSGAFG00000009886	rpusd1	98	58.278	Gambusia_affinis
ENSUAMG00000012736	RPUSD1	82	63.855	ENSGACG00000014276	rpusd1	97	56.250	Gasterosteus_aculeatus
ENSUAMG00000012736	RPUSD1	99	65.461	ENSGAGG00000004181	RPUSD1	99	65.461	Gopherus_agassizii
ENSUAMG00000012736	RPUSD1	100	79.808	ENSGGOG00000013997	RPUSD1	100	79.808	Gorilla_gorilla
ENSUAMG00000012736	RPUSD1	98	56.774	ENSHBUG00000023728	rpusd1	98	57.980	Haplochromis_burtoni
ENSUAMG00000012736	RPUSD1	100	83.007	ENSHGLG00000002595	RPUSD1	100	83.007	Heterocephalus_glaber_female
ENSUAMG00000012736	RPUSD1	100	83.007	ENSHGLG00100014303	RPUSD1	100	83.007	Heterocephalus_glaber_male
ENSUAMG00000012736	RPUSD1	98	57.239	ENSHCOG00000002390	rpusd1	99	56.902	Hippocampus_comes
ENSUAMG00000012736	RPUSD1	99	60.726	ENSIPUG00000001570	rpusd1	99	60.726	Ictalurus_punctatus
ENSUAMG00000012736	RPUSD1	100	83.660	ENSSTOG00000004276	RPUSD1	100	83.007	Ictidomys_tridecemlineatus
ENSUAMG00000012736	RPUSD1	100	83.660	ENSJJAG00000015696	Rpusd1	100	83.333	Jaculus_jaculus
ENSUAMG00000012736	RPUSD1	98	58.000	ENSKMAG00000017287	rpusd1	98	57.333	Kryptolebias_marmoratus
ENSUAMG00000012736	RPUSD1	98	55.410	ENSLBEG00000013354	RPUSD1	98	55.410	Labrus_bergylta
ENSUAMG00000012736	RPUSD1	98	55.410	ENSLBEG00000022502	rpusd1	98	55.410	Labrus_bergylta
ENSUAMG00000012736	RPUSD1	99	62.583	ENSLACG00000008869	RPUSD1	99	62.583	Latimeria_chalumnae
ENSUAMG00000012736	RPUSD1	72	73.148	ENSLOCG00000005682	rpusd1	99	73.148	Lepisosteus_oculatus
ENSUAMG00000012736	RPUSD1	100	83.775	ENSLAFG00000002115	RPUSD1	100	83.775	Loxodonta_africana
ENSUAMG00000012736	RPUSD1	100	81.090	ENSMFAG00000003961	RPUSD1	100	81.090	Macaca_fascicularis
ENSUAMG00000012736	RPUSD1	100	81.090	ENSMMUG00000000842	RPUSD1	100	81.090	Macaca_mulatta
ENSUAMG00000012736	RPUSD1	100	81.090	ENSMNEG00000042712	RPUSD1	100	81.090	Macaca_nemestrina
ENSUAMG00000012736	RPUSD1	100	81.090	ENSMLEG00000030591	RPUSD1	100	81.090	Mandrillus_leucophaeus
ENSUAMG00000012736	RPUSD1	98	58.170	ENSMAMG00000004735	rpusd1	98	58.170	Mastacembelus_armatus
ENSUAMG00000012736	RPUSD1	98	57.097	ENSMZEG00005003214	rpusd1	98	58.306	Maylandia_zebra
ENSUAMG00000012736	RPUSD1	97	66.445	ENSMGAG00000005447	RPUSD1	99	66.113	Meleagris_gallopavo
ENSUAMG00000012736	RPUSD1	87	78.571	ENSMAUG00000019998	Rpusd1	100	78.571	Mesocricetus_auratus
ENSUAMG00000012736	RPUSD1	100	82.736	ENSMICG00000017561	RPUSD1	100	83.388	Microcebus_murinus
ENSUAMG00000012736	RPUSD1	100	84.641	ENSMOCG00000014082	Rpusd1	100	84.314	Microtus_ochrogaster
ENSUAMG00000012736	RPUSD1	98	57.432	ENSMMOG00000012569	rpusd1	99	57.770	Mola_mola
ENSUAMG00000012736	RPUSD1	100	70.550	ENSMODG00000016882	RPUSD1	100	70.874	Monodelphis_domestica
ENSUAMG00000012736	RPUSD1	98	56.536	ENSMALG00000017818	rpusd1	98	56.536	Monopterus_albus
ENSUAMG00000012736	RPUSD1	100	84.967	MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.641	Mus_caroli
ENSUAMG00000012736	RPUSD1	100	85.621	ENSMUSG00000041199	Rpusd1	100	85.294	Mus_musculus
ENSUAMG00000012736	RPUSD1	100	83.442	MGP_PahariEiJ_G0023562	Rpusd1	100	83.117	Mus_pahari
ENSUAMG00000012736	RPUSD1	100	85.621	MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	Mus_spretus
ENSUAMG00000012736	RPUSD1	100	92.053	ENSMPUG00000015897	RPUSD1	100	92.053	Mustela_putorius_furo
ENSUAMG00000012736	RPUSD1	100	83.333	ENSMLUG00000001089	RPUSD1	100	83.280	Myotis_lucifugus
ENSUAMG00000012736	RPUSD1	100	82.680	ENSNGAG00000003595	Rpusd1	100	82.680	Nannospalax_galili
ENSUAMG00000012736	RPUSD1	98	59.322	ENSNBRG00000006457	rpusd1	98	59.322	Neolamprologus_brichardi
ENSUAMG00000012736	RPUSD1	55	78.286	ENSNLEG00000008424	-	100	78.286	Nomascus_leucogenys
ENSUAMG00000012736	RPUSD1	100	71.617	ENSMEUG00000016049	RPUSD1	100	71.617	Notamacropus_eugenii
ENSUAMG00000012736	RPUSD1	99	77.667	ENSOPRG00000008340	RPUSD1	99	77.000	Ochotona_princeps
ENSUAMG00000012736	RPUSD1	100	80.719	ENSODEG00000016945	RPUSD1	100	79.739	Octodon_degus
ENSUAMG00000012736	RPUSD1	98	56.129	ENSONIG00000015672	rpusd1	99	57.329	Oreochromis_niloticus
ENSUAMG00000012736	RPUSD1	99	59.406	ENSORLG00000013009	rpusd1	99	59.076	Oryzias_latipes
ENSUAMG00000012736	RPUSD1	99	59.076	ENSORLG00020010382	rpusd1	99	58.746	Oryzias_latipes_hni
ENSUAMG00000012736	RPUSD1	99	58.416	ENSORLG00015021354	rpusd1	99	58.086	Oryzias_latipes_hsok
ENSUAMG00000012736	RPUSD1	98	58.140	ENSOMEG00000021426	rpusd1	98	58.249	Oryzias_melastigma
ENSUAMG00000012736	RPUSD1	100	82.372	ENSOGAG00000003795	RPUSD1	100	82.372	Otolemur_garnettii
ENSUAMG00000012736	RPUSD1	100	85.390	ENSOARG00000014254	RPUSD1	100	84.740	Ovis_aries
ENSUAMG00000012736	RPUSD1	100	79.808	ENSPPAG00000034797	RPUSD1	100	79.808	Pan_paniscus
ENSUAMG00000012736	RPUSD1	100	91.391	ENSPPRG00000012389	RPUSD1	100	91.391	Panthera_pardus
ENSUAMG00000012736	RPUSD1	100	91.391	ENSPTIG00000008545	RPUSD1	92	91.391	Panthera_tigris_altaica
ENSUAMG00000012736	RPUSD1	100	79.808	ENSPTRG00000007565	RPUSD1	100	79.808	Pan_troglodytes
ENSUAMG00000012736	RPUSD1	100	80.449	ENSPANG00000024401	RPUSD1	100	80.449	Papio_anubis
ENSUAMG00000012736	RPUSD1	99	60.855	ENSPKIG00000018890	rpusd1	91	60.855	Paramormyrops_kingsleyae
ENSUAMG00000012736	RPUSD1	99	66.885	ENSPSIG00000013945	RPUSD1	100	66.885	Pelodiscus_sinensis
ENSUAMG00000012736	RPUSD1	97	58.503	ENSPMGG00000014950	rpusd1	97	58.503	Periophthalmus_magnuspinnatus
ENSUAMG00000012736	RPUSD1	100	83.333	ENSPEMG00000000497	Rpusd1	100	82.680	Peromyscus_maniculatus_bairdii
ENSUAMG00000012736	RPUSD1	98	52.303	ENSPMAG00000001563	rpusd1	84	57.915	Petromyzon_marinus
ENSUAMG00000012736	RPUSD1	100	71.475	ENSPCIG00000021216	-	94	71.475	Phascolarctos_cinereus
ENSUAMG00000012736	RPUSD1	98	58.528	ENSPFOG00000007946	rpusd1	98	58.528	Poecilia_formosa
ENSUAMG00000012736	RPUSD1	98	58.528	ENSPLAG00000011925	rpusd1	98	58.528	Poecilia_latipinna
ENSUAMG00000012736	RPUSD1	98	58.194	ENSPMEG00000002910	rpusd1	98	58.194	Poecilia_mexicana
ENSUAMG00000012736	RPUSD1	98	59.272	ENSPREG00000019851	rpusd1	98	58.940	Poecilia_reticulata
ENSUAMG00000012736	RPUSD1	100	69.536	ENSPCAG00000002258	RPUSD1	100	69.205	Procavia_capensis
ENSUAMG00000012736	RPUSD1	100	83.654	ENSPCOG00000022582	RPUSD1	100	83.333	Propithecus_coquereli
ENSUAMG00000012736	RPUSD1	100	81.731	ENSPVAG00000013104	RPUSD1	100	80.769	Pteropus_vampyrus
ENSUAMG00000012736	RPUSD1	98	58.644	ENSPNYG00000024076	rpusd1	98	58.983	Pundamilia_nyererei
ENSUAMG00000012736	RPUSD1	99	59.197	ENSPNAG00000013806	rpusd1	100	58.528	Pygocentrus_nattereri
ENSUAMG00000012736	RPUSD1	100	84.314	ENSRNOG00000023639	Rpusd1	100	83.987	Rattus_norvegicus
ENSUAMG00000012736	RPUSD1	100	80.769	ENSRBIG00000030238	RPUSD1	100	80.769	Rhinopithecus_bieti
ENSUAMG00000012736	RPUSD1	100	80.769	ENSRROG00000036663	RPUSD1	100	80.769	Rhinopithecus_roxellana
ENSUAMG00000012736	RPUSD1	100	83.444	ENSSBOG00000033063	RPUSD1	100	83.444	Saimiri_boliviensis_boliviensis
ENSUAMG00000012736	RPUSD1	100	70.164	ENSSHAG00000013500	RPUSD1	100	70.164	Sarcophilus_harrisii
ENSUAMG00000012736	RPUSD1	99	61.130	ENSSFOG00015014394	rpusd1	99	61.130	Scleropages_formosus
ENSUAMG00000012736	RPUSD1	98	56.393	ENSSMAG00000008045	rpusd1	91	56.721	Scophthalmus_maximus
ENSUAMG00000012736	RPUSD1	84	66.403	ENSSDUG00000001829	rpusd1	95	59.016	Seriola_dumerili
ENSUAMG00000012736	RPUSD1	84	66.403	ENSSLDG00000020853	rpusd1	95	59.016	Seriola_lalandi_dorsalis
ENSUAMG00000012736	RPUSD1	55	86.228	ENSSARG00000011187	-	100	86.228	Sorex_araneus
ENSUAMG00000012736	RPUSD1	62	56.771	ENSSPUG00000005119	-	100	54.592	Sphenodon_punctatus
ENSUAMG00000012736	RPUSD1	98	58.033	ENSSPAG00000012708	rpusd1	98	57.705	Stegastes_partitus
ENSUAMG00000012736	RPUSD1	100	83.333	ENSSSCG00000008000	RPUSD1	99	85.992	Sus_scrofa
ENSUAMG00000012736	RPUSD1	84	74.510	ENSTGUG00000015375	RPUSD1	100	74.510	Taeniopygia_guttata
ENSUAMG00000012736	RPUSD1	98	56.536	ENSTRUG00000003041	rpusd1	98	56.536	Takifugu_rubripes
ENSUAMG00000012736	RPUSD1	98	55.068	ENSTNIG00000002660	rpusd1	99	55.068	Tetraodon_nigroviridis
ENSUAMG00000012736	RPUSD1	100	83.974	ENSTTRG00000010167	RPUSD1	100	83.654	Tursiops_truncatus
ENSUAMG00000012736	RPUSD1	100	99.669	ENSUMAG00000021174	RPUSD1	100	99.669	Ursus_maritimus
ENSUAMG00000012736	RPUSD1	100	94.702	ENSVVUG00000012357	RPUSD1	100	94.702	Vulpes_vulpes
ENSUAMG00000012736	RPUSD1	100	62.500	ENSXETG00000007184	rpusd1	100	61.184	Xenopus_tropicalis
ENSUAMG00000012736	RPUSD1	98	58.333	ENSXCOG00000017930	rpusd1	98	58.333	Xiphophorus_couchianus
ENSUAMG00000012736	RPUSD1	98	58.278	ENSXMAG00000024084	rpusd1	98	57.947	Xiphophorus_maculatus