EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000013431 (Gene tree)
Gene ID: -
Gene Symbol: SNRPD1
Alias: HsT2456|SNRPD|Sm-D1
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 12057 bases
Position: chrLZNR01000794.1:79089-91145
Accession: 11158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000016913	LSM	PF01423.22	4.8e-19	1	1
ENSUAMP00000016923	LSM	PF01423.22	1.2e-18	1	1
ENSUAMP00000016916	LSM	PF01423.22	1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000018945	SNRPD1-203	354	-	ENSUAMP00000016923	117 (aa)	-	-
ENSUAMT00000018935	SNRPD1-201	759	-	ENSUAMP00000016913	100 (aa)	-	-
ENSUAMT00000018938	SNRPD1-202	748	-	ENSUAMP00000016916	93 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000013431's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000013431's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000013431	SNRPD1	96	30.108	ENSUAMG00000010767	SNRPD3	74	30.108

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000013431	SNRPD1	97	100.000	ENSG00000167088	SNRPD1	100	100.000	Homo_sapiens
ENSUAMG00000013431	SNRPD1	97	96.491	ENSAPOG00000019446	snrpd1	62	96.491	Acanthochromis_polyacanthus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSAMEG00000002576	SNRPD1	97	100.000	Ailuropoda_melanoleuca
ENSUAMG00000013431	SNRPD1	96	96.429	ENSACIG00000011263	snrpd1	100	96.429	Amphilophus_citrinellus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSAOCG00000007406	snrpd1	96	96.491	Amphiprion_ocellaris
ENSUAMG00000013431	SNRPD1	96	96.429	ENSAPEG00000012539	SNRPD1	100	96.429	Amphiprion_percula
ENSUAMG00000013431	SNRPD1	97	92.105	ENSAPEG00000014961	snrpd1	96	92.105	Amphiprion_percula
ENSUAMG00000013431	SNRPD1	97	96.491	ENSATEG00000014399	snrpd1	100	96.429	Anabas_testudineus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSAPLG00000012256	SNRPD1	96	100.000	Anas_platyrhynchos
ENSUAMG00000013431	SNRPD1	97	100.000	ENSACAG00000006364	SNRPD1	96	100.000	Anolis_carolinensis
ENSUAMG00000013431	SNRPD1	97	100.000	ENSANAG00000025641	SNRPD1	96	100.000	Aotus_nancymaae
ENSUAMG00000013431	SNRPD1	96	96.429	ENSACLG00000017406	snrpd1	100	96.429	Astatotilapia_calliptera
ENSUAMG00000013431	SNRPD1	97	97.368	ENSAMXG00000004589	snrpd1	96	97.368	Astyanax_mexicanus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSBTAG00000008292	SNRPD1	96	100.000	Bos_taurus
ENSUAMG00000013431	SNRPD1	97	97.368	ENSBTAG00000047266	-	96	97.368	Bos_taurus
ENSUAMG00000013431	SNRPD1	94	97.872	ENSBTAG00000012376	-	82	96.364	Bos_taurus
ENSUAMG00000013431	SNRPD1	94	97.701	ENSBTAG00000055316	-	91	90.351	Bos_taurus
ENSUAMG00000013431	SNRPD1	88	80.682	WBGene00004916	snr-3	75	76.842	Caenorhabditis_elegans
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCJAG00000042955	SNRPD1	96	100.000	Callithrix_jacchus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCAFG00000018247	SNRPD1	96	100.000	Canis_familiaris
ENSUAMG00000013431	SNRPD1	94	100.000	ENSCAFG00020015914	SNRPD1	73	100.000	Canis_lupus_dingo
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCHIG00000005557	SNRPD1	96	100.000	Capra_hircus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSTSYG00000030028	SNRPD1	96	100.000	Carlito_syrichta
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCAPG00000008103	SNRPD1	98	100.000	Cavia_aperea
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCPOG00000004679	SNRPD1	98	100.000	Cavia_porcellus
ENSUAMG00000013431	SNRPD1	97	95.614	ENSCCAG00000005390	-	96	95.614	Cebus_capucinus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSCCAG00000016652	-	96	96.491	Cebus_capucinus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCCAG00000032658	SNRPD1	96	100.000	Cebus_capucinus
ENSUAMG00000013431	SNRPD1	97	99.123	ENSCCAG00000020611	-	96	99.123	Cebus_capucinus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCATG00000039978	SNRPD1	96	100.000	Cercocebus_atys
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCLAG00000008691	SNRPD1	96	100.000	Chinchilla_lanigera
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCSAG00000017654	SNRPD1	96	100.000	Chlorocebus_sabaeus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCPBG00000023143	SNRPD1	96	100.000	Chrysemys_picta_bellii
ENSUAMG00000013431	SNRPD1	86	87.209	ENSCING00000024100	-	81	78.218	Ciona_intestinalis
ENSUAMG00000013431	SNRPD1	87	85.057	ENSCSAVG00000004578	-	78	78.351	Ciona_savignyi
ENSUAMG00000013431	SNRPD1	93	75.269	ENSCGRG00001009945	-	87	73.469	Cricetulus_griseus_chok1gshd
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCGRG00001021055	-	96	100.000	Cricetulus_griseus_chok1gshd
ENSUAMG00000013431	SNRPD1	93	75.269	ENSCGRG00000006224	-	87	73.469	Cricetulus_griseus_crigri
ENSUAMG00000013431	SNRPD1	97	100.000	ENSCGRG00000000490	-	96	100.000	Cricetulus_griseus_crigri
ENSUAMG00000013431	SNRPD1	100	90.000	ENSCSEG00000018141	snrpd1	79	94.681	Cynoglossus_semilaevis
ENSUAMG00000013431	SNRPD1	97	96.491	ENSCVAG00000000534	snrpd1	96	96.491	Cyprinodon_variegatus
ENSUAMG00000013431	SNRPD1	97	97.368	ENSDARG00000011648	snrpd1	96	97.368	Danio_rerio
ENSUAMG00000013431	SNRPD1	97	100.000	ENSDNOG00000040310	SNRPD1	96	100.000	Dasypus_novemcinctus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSDORG00000008349	Snrpd1	96	100.000	Dipodomys_ordii
ENSUAMG00000013431	SNRPD1	94	82.979	FBgn0261933	SmD1	77	82.292	Drosophila_melanogaster
ENSUAMG00000013431	SNRPD1	75	100.000	ENSETEG00000011689	SNRPD1	74	100.000	Echinops_telfairi
ENSUAMG00000013431	SNRPD1	96	91.667	ENSEBUG00000003170	snrpd1	95	91.667	Eptatretus_burgeri
ENSUAMG00000013431	SNRPD1	96	100.000	ENSEASG00005002433	SNRPD1	100	100.000	Equus_asinus_asinus
ENSUAMG00000013431	SNRPD1	96	100.000	ENSECAG00000014373	SNRPD1	100	100.000	Equus_caballus
ENSUAMG00000013431	SNRPD1	94	100.000	ENSEEUG00000004987	SNRPD1	100	100.000	Erinaceus_europaeus
ENSUAMG00000013431	SNRPD1	94	95.745	ENSELUG00000000088	snrpd1	79	95.745	Esox_lucius
ENSUAMG00000013431	SNRPD1	97	100.000	ENSFCAG00000012352	SNRPD1	96	100.000	Felis_catus
ENSUAMG00000013431	SNRPD1	96	100.000	ENSFALG00000002646	SNRPD1	100	100.000	Ficedula_albicollis
ENSUAMG00000013431	SNRPD1	97	97.368	ENSGMOG00000015607	snrpd1	96	97.368	Gadus_morhua
ENSUAMG00000013431	SNRPD1	97	100.000	ENSGALG00000041334	SNRPD1	96	100.000	Gallus_gallus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSGAFG00000011171	snrpd1	96	96.491	Gambusia_affinis
ENSUAMG00000013431	SNRPD1	97	97.368	ENSGACG00000005201	SNRPD1	96	97.368	Gasterosteus_aculeatus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSGAGG00000011197	SNRPD1	96	100.000	Gopherus_agassizii
ENSUAMG00000013431	SNRPD1	94	94.681	ENSGGOG00000026706	-	78	94.681	Gorilla_gorilla
ENSUAMG00000013431	SNRPD1	97	100.000	ENSGGOG00000041053	SNRPD1	96	100.000	Gorilla_gorilla
ENSUAMG00000013431	SNRPD1	97	96.491	ENSHBUG00000003236	snrpd1	96	96.491	Haplochromis_burtoni
ENSUAMG00000013431	SNRPD1	97	100.000	ENSHGLG00000007152	SNRPD1	96	100.000	Heterocephalus_glaber_female
ENSUAMG00000013431	SNRPD1	97	100.000	ENSHGLG00100008618	SNRPD1	96	100.000	Heterocephalus_glaber_male
ENSUAMG00000013431	SNRPD1	97	96.491	ENSIPUG00000003576	snrpd1	96	96.491	Ictalurus_punctatus
ENSUAMG00000013431	SNRPD1	98	100.000	ENSSTOG00000000485	SNRPD1	97	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSJJAG00000017698	Snrpd1	96	100.000	Jaculus_jaculus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSKMAG00000005987	snrpd1	96	96.491	Kryptolebias_marmoratus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSLBEG00000003327	snrpd1	96	96.491	Labrus_bergylta
ENSUAMG00000013431	SNRPD1	97	100.000	ENSLACG00000001955	SNRPD1	96	100.000	Latimeria_chalumnae
ENSUAMG00000013431	SNRPD1	97	98.246	ENSLOCG00000002003	snrpd1	97	98.246	Lepisosteus_oculatus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSLAFG00000005819	SNRPD1	97	100.000	Loxodonta_africana
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMFAG00000042080	SNRPD1	96	100.000	Macaca_fascicularis
ENSUAMG00000013431	SNRPD1	100	98.291	ENSMMUG00000003992	SNRPD1	100	98.291	Macaca_mulatta
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMNEG00000041296	SNRPD1	96	100.000	Macaca_nemestrina
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMLEG00000028659	SNRPD1	96	100.000	Mandrillus_leucophaeus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSMAMG00000012971	snrpd1	96	96.491	Mastacembelus_armatus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSMZEG00005004685	snrpd1	96	96.491	Maylandia_zebra
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMGAG00000011598	SNRPD1	94	100.000	Meleagris_gallopavo
ENSUAMG00000013431	SNRPD1	98	98.901	ENSMAUG00000006829	-	61	98.936	Mesocricetus_auratus
ENSUAMG00000013431	SNRPD1	91	87.059	ENSMAUG00000016502	-	85	84.043	Mesocricetus_auratus
ENSUAMG00000013431	SNRPD1	91	87.059	ENSMAUG00000016467	-	85	84.043	Mesocricetus_auratus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMICG00000044066	SNRPD1	96	100.000	Microcebus_murinus
ENSUAMG00000013431	SNRPD1	98	99.130	ENSMOCG00000017367	Snrpd1	96	100.000	Microtus_ochrogaster
ENSUAMG00000013431	SNRPD1	97	96.491	ENSMMOG00000019089	snrpd1	96	96.491	Mola_mola
ENSUAMG00000013431	SNRPD1	98	99.130	ENSMODG00000021487	SNRPD1	99	99.130	Monodelphis_domestica
ENSUAMG00000013431	SNRPD1	97	96.491	ENSMALG00000014459	snrpd1	96	96.491	Monopterus_albus
ENSUAMG00000013431	SNRPD1	97	100.000	MGP_CAROLIEiJ_G0021994	Snrpd1	96	100.000	Mus_caroli
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMUSG00000002477	Snrpd1	96	100.000	Mus_musculus
ENSUAMG00000013431	SNRPD1	97	100.000	MGP_PahariEiJ_G0018731	Snrpd1	96	100.000	Mus_pahari
ENSUAMG00000013431	SNRPD1	97	100.000	MGP_SPRETEiJ_G0022910	Snrpd1	96	100.000	Mus_spretus
ENSUAMG00000013431	SNRPD1	97	99.123	ENSMPUG00000020041	-	96	99.123	Mustela_putorius_furo
ENSUAMG00000013431	SNRPD1	97	100.000	ENSMPUG00000005567	-	97	100.000	Mustela_putorius_furo
ENSUAMG00000013431	SNRPD1	95	100.000	ENSMLUG00000009124	SNRPD1	86	100.000	Myotis_lucifugus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSNGAG00000023946	Snrpd1	96	100.000	Nannospalax_galili
ENSUAMG00000013431	SNRPD1	96	94.792	ENSNBRG00000012119	snrpd1	79	94.792	Neolamprologus_brichardi
ENSUAMG00000013431	SNRPD1	97	97.368	ENSNLEG00000031430	SNRPD1	96	97.368	Nomascus_leucogenys
ENSUAMG00000013431	SNRPD1	97	100.000	ENSODEG00000005764	SNRPD1	96	100.000	Octodon_degus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSONIG00000002486	snrpd1	96	96.491	Oreochromis_niloticus
ENSUAMG00000013431	SNRPD1	94	89.655	ENSOANG00000004638	-	82	88.660	Ornithorhynchus_anatinus
ENSUAMG00000013431	SNRPD1	97	99.123	ENSOCUG00000014399	-	96	99.123	Oryctolagus_cuniculus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSOCUG00000023761	-	97	100.000	Oryctolagus_cuniculus
ENSUAMG00000013431	SNRPD1	96	96.429	ENSORLG00000012516	snrpd1	100	96.429	Oryzias_latipes
ENSUAMG00000013431	SNRPD1	97	96.491	ENSORLG00020005743	snrpd1	96	96.491	Oryzias_latipes_hni
ENSUAMG00000013431	SNRPD1	97	96.491	ENSORLG00015013402	snrpd1	96	96.491	Oryzias_latipes_hsok
ENSUAMG00000013431	SNRPD1	97	96.491	ENSOMEG00000011571	snrpd1	96	96.491	Oryzias_melastigma
ENSUAMG00000013431	SNRPD1	97	100.000	ENSOGAG00000007833	SNRPD1	96	100.000	Otolemur_garnettii
ENSUAMG00000013431	SNRPD1	94	100.000	ENSOARG00000003413	-	81	94.737	Ovis_aries
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPPAG00000042593	SNRPD1	96	100.000	Pan_paniscus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPPRG00000002399	SNRPD1	96	100.000	Panthera_pardus
ENSUAMG00000013431	SNRPD1	94	68.085	ENSPPRG00000005009	-	87	71.028	Panthera_pardus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPTIG00000013206	SNRPD1	100	100.000	Panthera_tigris_altaica
ENSUAMG00000013431	SNRPD1	94	93.617	ENSPTRG00000050159	-	83	93.814	Pan_troglodytes
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPTRG00000009909	SNRPD1	96	100.000	Pan_troglodytes
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPANG00000023478	SNRPD1	96	100.000	Papio_anubis
ENSUAMG00000013431	SNRPD1	97	97.368	ENSPKIG00000003985	SNRPD1	96	97.368	Paramormyrops_kingsleyae
ENSUAMG00000013431	SNRPD1	94	95.402	ENSPKIG00000021610	snrpd1	94	95.238	Paramormyrops_kingsleyae
ENSUAMG00000013431	SNRPD1	97	96.491	ENSPMGG00000001862	snrpd1	96	96.491	Periophthalmus_magnuspinnatus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPEMG00000014773	-	96	100.000	Peromyscus_maniculatus_bairdii
ENSUAMG00000013431	SNRPD1	95	82.474	ENSPMAG00000003938	-	81	82.828	Petromyzon_marinus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPCIG00000020320	SNRPD1	100	100.000	Phascolarctos_cinereus
ENSUAMG00000013431	SNRPD1	94	95.745	ENSPFOG00000012448	SNRPD1	83	95.745	Poecilia_formosa
ENSUAMG00000013431	SNRPD1	94	95.745	ENSPLAG00000006738	snrpd1	83	95.745	Poecilia_latipinna
ENSUAMG00000013431	SNRPD1	94	95.745	ENSPMEG00000021942	snrpd1	83	95.745	Poecilia_mexicana
ENSUAMG00000013431	SNRPD1	97	96.491	ENSPREG00000007094	snrpd1	96	96.491	Poecilia_reticulata
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPPYG00000025874	SNRPD1	96	100.000	Pongo_abelii
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPCOG00000013327	SNRPD1	96	100.000	Propithecus_coquereli
ENSUAMG00000013431	SNRPD1	97	100.000	ENSPVAG00000005511	SNRPD1	77	100.000	Pteropus_vampyrus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSPNAG00000017824	snrpd1	96	96.491	Pygocentrus_nattereri
ENSUAMG00000013431	SNRPD1	97	100.000	ENSRNOG00000013714	Snrpd1	96	100.000	Rattus_norvegicus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSRBIG00000022996	SNRPD1	96	100.000	Rhinopithecus_bieti
ENSUAMG00000013431	SNRPD1	97	100.000	ENSRROG00000027640	SNRPD1	96	100.000	Rhinopithecus_roxellana
ENSUAMG00000013431	SNRPD1	97	100.000	ENSSBOG00000020998	SNRPD1	96	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000013431	SNRPD1	97	100.000	ENSSHAG00000011791	SNRPD1	96	100.000	Sarcophilus_harrisii
ENSUAMG00000013431	SNRPD1	94	94.681	ENSSFOG00015008809	-	90	95.327	Scleropages_formosus
ENSUAMG00000013431	SNRPD1	97	93.814	ENSSFOG00015022253	-	90	95.327	Scleropages_formosus
ENSUAMG00000013431	SNRPD1	94	94.681	ENSSMAG00000008765	snrpd1	94	95.238	Scophthalmus_maximus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSSDUG00000010521	snrpd1	97	96.491	Seriola_dumerili
ENSUAMG00000013431	SNRPD1	97	96.491	ENSSLDG00000011858	snrpd1	96	96.491	Seriola_lalandi_dorsalis
ENSUAMG00000013431	SNRPD1	70	100.000	ENSSARG00000004271	SNRPD1	100	100.000	Sorex_araneus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSSPUG00000002824	SNRPD1	96	100.000	Sphenodon_punctatus
ENSUAMG00000013431	SNRPD1	96	96.429	ENSSPAG00000015229	snrpd1	100	96.429	Stegastes_partitus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSSSCG00000003701	SNRPD1	100	100.000	Sus_scrofa
ENSUAMG00000013431	SNRPD1	97	100.000	ENSTGUG00000005095	SNRPD1	96	100.000	Taeniopygia_guttata
ENSUAMG00000013431	SNRPD1	96	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSUAMG00000013431	SNRPD1	84	89.744	ENSTNIG00000001224	snrpd1	92	91.667	Tetraodon_nigroviridis
ENSUAMG00000013431	SNRPD1	75	100.000	ENSTBEG00000013776	SNRPD1	100	100.000	Tupaia_belangeri
ENSUAMG00000013431	SNRPD1	97	100.000	ENSTTRG00000002654	SNRPD1	99	100.000	Tursiops_truncatus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSUMAG00000019740	SNRPD1	96	100.000	Ursus_maritimus
ENSUAMG00000013431	SNRPD1	97	100.000	ENSVPAG00000010056	SNRPD1	77	100.000	Vicugna_pacos
ENSUAMG00000013431	SNRPD1	96	100.000	ENSVVUG00000004009	SNRPD1	100	100.000	Vulpes_vulpes
ENSUAMG00000013431	SNRPD1	97	98.246	ENSXETG00000027354	snrpd1	96	98.246	Xenopus_tropicalis
ENSUAMG00000013431	SNRPD1	97	96.491	ENSXCOG00000020108	snrpd1	96	96.491	Xiphophorus_couchianus
ENSUAMG00000013431	SNRPD1	97	96.491	ENSXMAG00000003368	snrpd1	96	96.491	Xiphophorus_maculatus