EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000013627 (Gene tree)
Gene ID: -
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 1149 bases
Position: chrLZNR01004252.1:56704-57852
Accession: 13629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000017175	RRM_5	PF13893.6	3.3e-11	1	2
ENSUAMP00000017175	RRM_5	PF13893.6	3.3e-11	2	2
ENSUAMP00000017175	RRM_1	PF00076.22	2.6e-78	1	4
ENSUAMP00000017175	RRM_1	PF00076.22	2.6e-78	2	4
ENSUAMP00000017175	RRM_1	PF00076.22	2.6e-78	3	4
ENSUAMP00000017175	RRM_1	PF00076.22	2.6e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000019215	PABPC5-201	1149	-	ENSUAMP00000017175	382 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000013627's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000013627's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000013627	PABPC5	96	66.849	ENSUAMG00000000303	PABPC4	58	67.039
ENSUAMG00000013627	PABPC5	93	60.204	ENSUAMG00000008089	-	98	59.896
ENSUAMG00000013627	PABPC5	96	62.912	ENSUAMG00000001289	PABPC4L	98	62.921
ENSUAMG00000013627	PABPC5	93	37.500	ENSUAMG00000000405	ELAVL3	59	37.500
ENSUAMG00000013627	PABPC5	66	36.667	ENSUAMG00000019567	CELF3	58	34.524
ENSUAMG00000013627	PABPC5	96	60.274	ENSUAMG00000017682	PABPC1L	64	60.335
ENSUAMG00000013627	PABPC5	98	64.075	ENSUAMG00000024428	PABPC1	61	65.084
ENSUAMG00000013627	PABPC5	94	35.802	ENSUAMG00000018679	ELAVL2	89	35.802
ENSUAMG00000013627	PABPC5	92	33.333	ENSUAMG00000009532	TIAL1	83	34.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000013627	PABPC5	99	96.850	ENSG00000174740	PABPC5	99	96.850	Homo_sapiens
ENSUAMG00000013627	PABPC5	99	99.475	ENSAMEG00000020114	PABPC5	100	99.475	Ailuropoda_melanoleuca
ENSUAMG00000013627	PABPC5	99	96.850	ENSANAG00000005063	PABPC5	99	96.850	Aotus_nancymaae
ENSUAMG00000013627	PABPC5	100	96.335	ENSBTAG00000019942	PABPC5	100	96.335	Bos_taurus
ENSUAMG00000013627	PABPC5	99	96.325	ENSCJAG00000003665	PABPC5	99	96.325	Callithrix_jacchus
ENSUAMG00000013627	PABPC5	100	98.953	ENSCAFG00000017452	PABPC5	100	98.953	Canis_familiaris
ENSUAMG00000013627	PABPC5	100	96.335	ENSCHIG00000019004	PABPC5	100	96.335	Capra_hircus
ENSUAMG00000013627	PABPC5	100	96.335	ENSTSYG00000036351	PABPC5	100	96.335	Carlito_syrichta
ENSUAMG00000013627	PABPC5	99	87.435	ENSCAPG00000010714	PABPC5	100	87.435	Cavia_aperea
ENSUAMG00000013627	PABPC5	100	93.717	ENSCPOG00000002555	PABPC5	100	93.717	Cavia_porcellus
ENSUAMG00000013627	PABPC5	99	96.850	ENSCCAG00000032154	PABPC5	99	96.850	Cebus_capucinus
ENSUAMG00000013627	PABPC5	99	96.850	ENSCATG00000043083	PABPC5	99	96.850	Cercocebus_atys
ENSUAMG00000013627	PABPC5	100	94.764	ENSCLAG00000000647	PABPC5	100	94.764	Chinchilla_lanigera
ENSUAMG00000013627	PABPC5	99	96.850	ENSCSAG00000000065	PABPC5	99	96.850	Chlorocebus_sabaeus
ENSUAMG00000013627	PABPC5	99	96.850	ENSCANG00000011473	PABPC5	99	96.850	Colobus_angolensis_palliatus
ENSUAMG00000013627	PABPC5	100	93.194	ENSCGRG00000018699	Pabpc5	100	93.194	Cricetulus_griseus_crigri
ENSUAMG00000013627	PABPC5	100	78.068	ENSETEG00000011832	PABPC5	100	78.068	Echinops_telfairi
ENSUAMG00000013627	PABPC5	100	97.644	ENSEASG00005014396	PABPC5	100	97.644	Equus_asinus_asinus
ENSUAMG00000013627	PABPC5	100	97.644	ENSECAG00000003452	PABPC5	100	97.644	Equus_caballus
ENSUAMG00000013627	PABPC5	100	99.215	ENSFCAG00000004998	PABPC5	100	99.215	Felis_catus
ENSUAMG00000013627	PABPC5	100	95.812	ENSFDAG00000000126	PABPC5	100	95.812	Fukomys_damarensis
ENSUAMG00000013627	PABPC5	99	96.850	ENSGGOG00000007622	PABPC5	99	96.850	Gorilla_gorilla
ENSUAMG00000013627	PABPC5	95	95.872	ENSJJAG00000011960	Pabpc5	100	95.872	Jaculus_jaculus
ENSUAMG00000013627	PABPC5	99	96.850	ENSMFAG00000024561	PABPC5	99	96.850	Macaca_fascicularis
ENSUAMG00000013627	PABPC5	99	96.850	ENSMMUG00000011562	PABPC5	99	96.850	Macaca_mulatta
ENSUAMG00000013627	PABPC5	99	96.850	ENSMNEG00000037604	PABPC5	99	96.850	Macaca_nemestrina
ENSUAMG00000013627	PABPC5	99	96.850	ENSMLEG00000028318	PABPC5	99	96.850	Mandrillus_leucophaeus
ENSUAMG00000013627	PABPC5	100	96.073	ENSMICG00000041706	PABPC5	100	96.073	Microcebus_murinus
ENSUAMG00000013627	PABPC5	100	95.026	ENSMOCG00000001554	Pabpc5	100	95.026	Microtus_ochrogaster
ENSUAMG00000013627	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSUAMG00000013627	PABPC5	99	93.684	ENSMUSG00000034732	Pabpc5	99	93.684	Mus_musculus
ENSUAMG00000013627	PABPC5	100	93.979	MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	Mus_pahari
ENSUAMG00000013627	PABPC5	99	93.684	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	Mus_spretus
ENSUAMG00000013627	PABPC5	100	98.429	ENSMPUG00000018465	PABPC5	100	98.429	Mustela_putorius_furo
ENSUAMG00000013627	PABPC5	100	96.073	ENSMLUG00000008244	PABPC5	100	96.073	Myotis_lucifugus
ENSUAMG00000013627	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSUAMG00000013627	PABPC5	99	96.850	ENSNLEG00000035086	PABPC5	99	96.850	Nomascus_leucogenys
ENSUAMG00000013627	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSUAMG00000013627	PABPC5	100	96.597	ENSOCUG00000010919	PABPC5	100	96.597	Oryctolagus_cuniculus
ENSUAMG00000013627	PABPC5	100	96.073	ENSOGAG00000006882	PABPC5	100	96.073	Otolemur_garnettii
ENSUAMG00000013627	PABPC5	100	96.597	ENSOARG00000010260	PABPC5	100	96.597	Ovis_aries
ENSUAMG00000013627	PABPC5	99	96.588	ENSPPAG00000007378	PABPC5	99	96.588	Pan_paniscus
ENSUAMG00000013627	PABPC5	100	99.215	ENSPPRG00000010742	PABPC5	100	99.215	Panthera_pardus
ENSUAMG00000013627	PABPC5	100	99.215	ENSPTIG00000001480	PABPC5	100	99.215	Panthera_tigris_altaica
ENSUAMG00000013627	PABPC5	99	96.850	ENSPTRG00000022078	PABPC5	99	96.850	Pan_troglodytes
ENSUAMG00000013627	PABPC5	99	96.850	ENSPANG00000018282	PABPC5	99	96.850	Papio_anubis
ENSUAMG00000013627	PABPC5	100	93.979	ENSPEMG00000000171	Pabpc5	100	93.979	Peromyscus_maniculatus_bairdii
ENSUAMG00000013627	PABPC5	99	96.850	ENSPPYG00000020526	PABPC5	99	96.850	Pongo_abelii
ENSUAMG00000013627	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSUAMG00000013627	PABPC5	100	96.597	ENSPCOG00000000676	PABPC5	100	96.597	Propithecus_coquereli
ENSUAMG00000013627	PABPC5	100	97.382	ENSPVAG00000006465	PABPC5	100	97.382	Pteropus_vampyrus
ENSUAMG00000013627	PABPC5	100	93.717	ENSRNOG00000003354	Pabpc5	100	93.717	Rattus_norvegicus
ENSUAMG00000013627	PABPC5	99	96.850	ENSRBIG00000011760	PABPC5	99	96.850	Rhinopithecus_bieti
ENSUAMG00000013627	PABPC5	99	96.850	ENSRROG00000036708	PABPC5	99	96.850	Rhinopithecus_roxellana
ENSUAMG00000013627	PABPC5	99	96.850	ENSSBOG00000008658	PABPC5	99	96.850	Saimiri_boliviensis_boliviensis
ENSUAMG00000013627	PABPC5	100	94.503	ENSSARG00000014012	PABPC5	100	94.503	Sorex_araneus
ENSUAMG00000013627	PABPC5	100	97.120	ENSSSCG00000040194	PABPC5	100	97.120	Sus_scrofa
ENSUAMG00000013627	PABPC5	100	97.382	ENSTBEG00000016482	PABPC5	100	97.382	Tupaia_belangeri
ENSUAMG00000013627	PABPC5	100	99.738	ENSUMAG00000023934	PABPC5	100	99.738	Ursus_maritimus
ENSUAMG00000013627	PABPC5	100	97.120	ENSVPAG00000001063	PABPC5	100	97.120	Vicugna_pacos
ENSUAMG00000013627	PABPC5	100	99.215	ENSVVUG00000013172	PABPC5	100	99.215	Vulpes_vulpes