EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000013721 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 29812 bases
Position: chrLZNR01000031.1:87376-117187
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000017305	EST1	PF10374.9	2.5e-24	1	1
ENSUAMP00000017311	EST1	PF10374.9	2.5e-24	1	1
ENSUAMP00000017305	EST1_DNA_bind	PF10373.9	2.6e-40	1	2
ENSUAMP00000017305	EST1_DNA_bind	PF10373.9	2.6e-40	2	2
ENSUAMP00000017311	EST1_DNA_bind	PF10373.9	2.6e-40	1	2
ENSUAMP00000017311	EST1_DNA_bind	PF10373.9	2.6e-40	2	2
ENSUAMP00000017305	PIN_4	PF13638.6	3e-05	1	1
ENSUAMP00000017311	PIN_4	PF13638.6	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000019364	SMG5-202	4487	-	ENSUAMP00000017311	1011 (aa)	-	-
ENSUAMT00000019358	SMG5-201	4487	-	ENSUAMP00000017305	1011 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000013721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000013721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000013721	SMG5	100	93.110	ENSG00000198952	SMG5	100	93.602	Homo_sapiens
ENSUAMG00000013721	SMG5	99	66.700	ENSAPOG00000019690	smg5	92	75.708	Acanthochromis_polyacanthus
ENSUAMG00000013721	SMG5	98	97.382	ENSAMEG00000014458	SMG5	100	97.382	Ailuropoda_melanoleuca
ENSUAMG00000013721	SMG5	99	64.100	ENSACIG00000001353	smg5	99	65.571	Amphilophus_citrinellus
ENSUAMG00000013721	SMG5	93	75.342	ENSAOCG00000019483	smg5	92	76.667	Amphiprion_ocellaris
ENSUAMG00000013721	SMG5	93	75.171	ENSAPEG00000022949	smg5	92	76.429	Amphiprion_percula
ENSUAMG00000013721	SMG5	99	65.534	ENSATEG00000005348	smg5	99	65.759	Anabas_testudineus
ENSUAMG00000013721	SMG5	98	77.268	ENSAPLG00000010263	SMG5	100	77.268	Anas_platyrhynchos
ENSUAMG00000013721	SMG5	100	92.618	ENSANAG00000032899	SMG5	100	93.307	Aotus_nancymaae
ENSUAMG00000013721	SMG5	99	64.093	ENSACLG00000009311	smg5	92	76.667	Astatotilapia_calliptera
ENSUAMG00000013721	SMG5	51	58.425	ENSAMXG00000024616	smg5	99	62.192	Astyanax_mexicanus
ENSUAMG00000013721	SMG5	100	92.618	ENSBTAG00000009435	SMG5	100	93.799	Bos_taurus
ENSUAMG00000013721	SMG5	99	43.922	ENSBTAG00000021747	-	99	43.602	Bos_taurus
ENSUAMG00000013721	SMG5	100	92.913	ENSCJAG00000005684	SMG5	100	93.602	Callithrix_jacchus
ENSUAMG00000013721	SMG5	100	96.637	ENSCAFG00000016839	SMG5	100	96.637	Canis_familiaris
ENSUAMG00000013721	SMG5	100	96.637	ENSCAFG00020006061	SMG5	100	96.637	Canis_lupus_dingo
ENSUAMG00000013721	SMG5	100	93.504	ENSCHIG00000007709	SMG5	100	93.504	Capra_hircus
ENSUAMG00000013721	SMG5	99	44.433	ENSCHIG00000006323	-	99	44.588	Capra_hircus
ENSUAMG00000013721	SMG5	100	93.314	ENSTSYG00000004099	SMG5	100	93.314	Carlito_syrichta
ENSUAMG00000013721	SMG5	97	71.095	ENSCAPG00000003631	SMG5	100	72.396	Cavia_aperea
ENSUAMG00000013721	SMG5	100	91.847	ENSCPOG00000015696	SMG5	100	92.141	Cavia_porcellus
ENSUAMG00000013721	SMG5	100	92.815	ENSCCAG00000027409	SMG5	100	93.504	Cebus_capucinus
ENSUAMG00000013721	SMG5	100	92.913	ENSCATG00000030539	SMG5	100	93.504	Cercocebus_atys
ENSUAMG00000013721	SMG5	100	92.338	ENSCLAG00000003983	SMG5	100	92.829	Chinchilla_lanigera
ENSUAMG00000013721	SMG5	100	92.815	ENSCSAG00000002120	SMG5	100	93.406	Chlorocebus_sabaeus
ENSUAMG00000013721	SMG5	55	87.591	ENSCHOG00000008741	-	57	87.591	Choloepus_hoffmanni
ENSUAMG00000013721	SMG5	93	75.355	ENSCPBG00000025848	SMG5	100	76.393	Chrysemys_picta_bellii
ENSUAMG00000013721	SMG5	94	35.107	ENSCING00000008706	-	99	34.836	Ciona_intestinalis
ENSUAMG00000013721	SMG5	100	89.272	ENSCANG00000029208	SMG5	100	89.862	Colobus_angolensis_palliatus
ENSUAMG00000013721	SMG5	100	89.774	ENSCGRG00001006336	Smg5	100	89.293	Cricetulus_griseus_chok1gshd
ENSUAMG00000013721	SMG5	98	89.829	ENSCGRG00000005111	Smg5	100	89.325	Cricetulus_griseus_crigri
ENSUAMG00000013721	SMG5	92	77.327	ENSCSEG00000014220	smg5	92	76.611	Cynoglossus_semilaevis
ENSUAMG00000013721	SMG5	99	59.921	ENSCVAG00000000529	smg5	99	59.547	Cyprinodon_variegatus
ENSUAMG00000013721	SMG5	95	79.177	ENSDARG00000041481	smg5	99	60.995	Danio_rerio
ENSUAMG00000013721	SMG5	92	37.128	ENSDNOG00000039862	-	100	35.745	Dasypus_novemcinctus
ENSUAMG00000013721	SMG5	100	89.173	ENSDNOG00000000051	SMG5	100	89.882	Dasypus_novemcinctus
ENSUAMG00000013721	SMG5	100	90.775	ENSDORG00000010382	Smg5	100	91.052	Dipodomys_ordii
ENSUAMG00000013721	SMG5	68	36.774	FBgn0019890	Smg5	62	36.774	Drosophila_melanogaster
ENSUAMG00000013721	SMG5	82	97.087	ENSETEG00000010336	SMG5	91	97.087	Echinops_telfairi
ENSUAMG00000013721	SMG5	90	46.575	ENSEBUG00000003739	smg5	98	47.154	Eptatretus_burgeri
ENSUAMG00000013721	SMG5	100	93.799	ENSEASG00005019122	SMG5	100	93.799	Equus_asinus_asinus
ENSUAMG00000013721	SMG5	100	93.799	ENSECAG00000001389	SMG5	100	93.799	Equus_caballus
ENSUAMG00000013721	SMG5	72	96.254	ENSEEUG00000012690	SMG5	73	96.254	Erinaceus_europaeus
ENSUAMG00000013721	SMG5	99	64.844	ENSELUG00000012585	smg5	99	64.844	Esox_lucius
ENSUAMG00000013721	SMG5	100	96.640	ENSFCAG00000011783	SMG5	100	96.640	Felis_catus
ENSUAMG00000013721	SMG5	58	80.801	ENSFALG00000001166	-	99	80.905	Ficedula_albicollis
ENSUAMG00000013721	SMG5	98	91.331	ENSFDAG00000017388	SMG5	100	91.230	Fukomys_damarensis
ENSUAMG00000013721	SMG5	97	61.515	ENSFHEG00000013939	smg5	94	66.773	Fundulus_heteroclitus
ENSUAMG00000013721	SMG5	99	60.498	ENSGMOG00000007310	smg5	92	75.000	Gadus_morhua
ENSUAMG00000013721	SMG5	99	76.420	ENSGALG00000029918	-	100	75.951	Gallus_gallus
ENSUAMG00000013721	SMG5	86	75.229	ENSGAFG00000021691	smg5	95	66.454	Gambusia_affinis
ENSUAMG00000013721	SMG5	100	77.704	ENSGAGG00000016131	SMG5	100	77.419	Gopherus_agassizii
ENSUAMG00000013721	SMG5	100	92.815	ENSGGOG00000010932	SMG5	100	93.504	Gorilla_gorilla
ENSUAMG00000013721	SMG5	99	63.715	ENSHBUG00000008654	smg5	92	76.667	Haplochromis_burtoni
ENSUAMG00000013721	SMG5	100	90.963	ENSHGLG00000019152	SMG5	100	91.454	Heterocephalus_glaber_female
ENSUAMG00000013721	SMG5	90	90.800	ENSHGLG00100015948	SMG5	99	91.347	Heterocephalus_glaber_male
ENSUAMG00000013721	SMG5	99	58.824	ENSHCOG00000010229	smg5	84	72.372	Hippocampus_comes
ENSUAMG00000013721	SMG5	99	60.889	ENSIPUG00000006624	Smg5	99	61.035	Ictalurus_punctatus
ENSUAMG00000013721	SMG5	100	93.307	ENSSTOG00000001780	SMG5	100	93.602	Ictidomys_tridecemlineatus
ENSUAMG00000013721	SMG5	100	89.892	ENSJJAG00000022763	Smg5	100	89.500	Jaculus_jaculus
ENSUAMG00000013721	SMG5	91	76.960	ENSKMAG00000014586	smg5	92	76.667	Kryptolebias_marmoratus
ENSUAMG00000013721	SMG5	99	65.209	ENSLBEG00000002145	smg5	92	76.850	Labrus_bergylta
ENSUAMG00000013721	SMG5	100	63.749	ENSLACG00000010521	SMG5	100	63.654	Latimeria_chalumnae
ENSUAMG00000013721	SMG5	96	77.752	ENSLOCG00000008380	smg5	92	78.043	Lepisosteus_oculatus
ENSUAMG00000013721	SMG5	100	93.110	ENSLAFG00000006241	SMG5	100	93.110	Loxodonta_africana
ENSUAMG00000013721	SMG5	100	92.815	ENSMFAG00000045357	SMG5	100	93.406	Macaca_fascicularis
ENSUAMG00000013721	SMG5	100	92.815	ENSMMUG00000000090	SMG5	100	93.406	Macaca_mulatta
ENSUAMG00000013721	SMG5	100	92.717	ENSMNEG00000044425	SMG5	100	93.307	Macaca_nemestrina
ENSUAMG00000013721	SMG5	100	86.569	ENSMLEG00000041192	SMG5	100	87.157	Mandrillus_leucophaeus
ENSUAMG00000013721	SMG5	99	59.893	ENSMAMG00000010683	smg5	100	59.040	Mastacembelus_armatus
ENSUAMG00000013721	SMG5	99	62.739	ENSMZEG00005015815	smg5	99	62.970	Maylandia_zebra
ENSUAMG00000013721	SMG5	62	58.094	ENSMZEG00005016543	smg5	100	58.015	Maylandia_zebra
ENSUAMG00000013721	SMG5	100	88.692	ENSMAUG00000010381	Smg5	100	88.212	Mesocricetus_auratus
ENSUAMG00000013721	SMG5	100	92.913	ENSMICG00000002257	SMG5	100	93.602	Microcebus_murinus
ENSUAMG00000013721	SMG5	100	88.616	ENSMOCG00000016590	Smg5	100	88.126	Microtus_ochrogaster
ENSUAMG00000013721	SMG5	99	57.720	ENSMMOG00000017199	smg5	99	58.401	Mola_mola
ENSUAMG00000013721	SMG5	76	37.280	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSUAMG00000013721	SMG5	91	39.370	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSUAMG00000013721	SMG5	97	34.838	ENSMODG00000004511	-	99	34.151	Monodelphis_domestica
ENSUAMG00000013721	SMG5	87	86.486	ENSMODG00000016901	SMG5	98	87.725	Monodelphis_domestica
ENSUAMG00000013721	SMG5	93	37.226	ENSMODG00000004532	-	83	37.750	Monodelphis_domestica
ENSUAMG00000013721	SMG5	99	58.608	ENSMALG00000010375	smg5	99	58.482	Monopterus_albus
ENSUAMG00000013721	SMG5	100	89.872	MGP_CAROLIEiJ_G0025163	Smg5	100	97.765	Mus_caroli
ENSUAMG00000013721	SMG5	100	89.971	ENSMUSG00000001415	Smg5	99	97.765	Mus_musculus
ENSUAMG00000013721	SMG5	100	89.303	MGP_PahariEiJ_G0026606	Smg5	100	97.765	Mus_pahari
ENSUAMG00000013721	SMG5	100	89.872	MGP_SPRETEiJ_G0026104	Smg5	100	97.765	Mus_spretus
ENSUAMG00000013721	SMG5	93	95.556	ENSMPUG00000004546	SMG5	100	95.556	Mustela_putorius_furo
ENSUAMG00000013721	SMG5	100	92.141	ENSMLUG00000008518	SMG5	100	92.141	Myotis_lucifugus
ENSUAMG00000013721	SMG5	98	44.444	ENSNGAG00000012101	-	98	44.646	Nannospalax_galili
ENSUAMG00000013721	SMG5	100	90.265	ENSNGAG00000020706	Smg5	100	91.052	Nannospalax_galili
ENSUAMG00000013721	SMG5	96	62.802	ENSNBRG00000004332	smg5	97	62.765	Neolamprologus_brichardi
ENSUAMG00000013721	SMG5	100	92.520	ENSNLEG00000012439	SMG5	100	93.209	Nomascus_leucogenys
ENSUAMG00000013721	SMG5	100	85.349	ENSMEUG00000012834	SMG5	100	85.349	Notamacropus_eugenii
ENSUAMG00000013721	SMG5	100	90.945	ENSOPRG00000009152	SMG5	100	91.240	Ochotona_princeps
ENSUAMG00000013721	SMG5	100	92.224	ENSODEG00000012237	SMG5	100	92.913	Octodon_degus
ENSUAMG00000013721	SMG5	99	59.556	ENSONIG00000008632	smg5	92	76.905	Oreochromis_niloticus
ENSUAMG00000013721	SMG5	98	92.540	ENSOCUG00000012886	SMG5	100	93.145	Oryctolagus_cuniculus
ENSUAMG00000013721	SMG5	91	40.959	ENSOCUG00000023338	-	99	40.261	Oryctolagus_cuniculus
ENSUAMG00000013721	SMG5	99	63.699	ENSORLG00020013127	smg5	99	64.637	Oryzias_latipes_hni
ENSUAMG00000013721	SMG5	99	63.805	ENSORLG00015019014	smg5	99	65.132	Oryzias_latipes_hsok
ENSUAMG00000013721	SMG5	81	57.895	ENSOMEG00000021330	smg5	92	58.983	Oryzias_melastigma
ENSUAMG00000013721	SMG5	100	92.421	ENSOGAG00000004966	SMG5	100	93.012	Otolemur_garnettii
ENSUAMG00000013721	SMG5	99	44.303	ENSOARG00000011963	-	99	43.953	Ovis_aries
ENSUAMG00000013721	SMG5	100	93.602	ENSOARG00000005778	SMG5	100	93.602	Ovis_aries
ENSUAMG00000013721	SMG5	100	92.717	ENSPPAG00000011996	SMG5	100	93.406	Pan_paniscus
ENSUAMG00000013721	SMG5	98	96.758	ENSPPRG00000011901	SMG5	100	96.758	Panthera_pardus
ENSUAMG00000013721	SMG5	96	89.549	ENSPTIG00000007892	SMG5	96	90.292	Panthera_tigris_altaica
ENSUAMG00000013721	SMG5	100	92.913	ENSPTRG00000049282	-	100	93.602	Pan_troglodytes
ENSUAMG00000013721	SMG5	100	92.913	ENSPTRG00000023925	SMG5	100	93.602	Pan_troglodytes
ENSUAMG00000013721	SMG5	100	92.913	ENSPANG00000011201	SMG5	100	93.504	Papio_anubis
ENSUAMG00000013721	SMG5	99	65.239	ENSPKIG00000009402	smg5	99	65.818	Paramormyrops_kingsleyae
ENSUAMG00000013721	SMG5	98	78.494	ENSPSIG00000015198	SMG5	100	78.649	Pelodiscus_sinensis
ENSUAMG00000013721	SMG5	99	60.407	ENSPMGG00000010465	smg5	99	59.649	Periophthalmus_magnuspinnatus
ENSUAMG00000013721	SMG5	100	89.577	ENSPEMG00000001819	Smg5	100	89.096	Peromyscus_maniculatus_bairdii
ENSUAMG00000013721	SMG5	55	45.936	ENSPEMG00000010022	-	95	44.367	Peromyscus_maniculatus_bairdii
ENSUAMG00000013721	SMG5	99	50.000	ENSPMAG00000000410	smg5	99	50.768	Petromyzon_marinus
ENSUAMG00000013721	SMG5	100	86.640	ENSPCIG00000018938	SMG5	100	87.623	Phascolarctos_cinereus
ENSUAMG00000013721	SMG5	93	75.459	ENSPFOG00000010191	smg5	99	61.386	Poecilia_formosa
ENSUAMG00000013721	SMG5	93	75.459	ENSPLAG00000009332	smg5	99	61.296	Poecilia_latipinna
ENSUAMG00000013721	SMG5	93	75.459	ENSPMEG00000014105	smg5	99	65.477	Poecilia_mexicana
ENSUAMG00000013721	SMG5	93	75.459	ENSPREG00000017713	smg5	99	61.206	Poecilia_reticulata
ENSUAMG00000013721	SMG5	100	93.012	ENSPPYG00000000723	SMG5	100	93.701	Pongo_abelii
ENSUAMG00000013721	SMG5	81	83.966	ENSPCAG00000008412	SMG5	81	94.475	Procavia_capensis
ENSUAMG00000013721	SMG5	100	92.815	ENSPCOG00000004741	SMG5	100	93.504	Propithecus_coquereli
ENSUAMG00000013721	SMG5	100	84.154	ENSPVAG00000016748	SMG5	100	84.154	Pteropus_vampyrus
ENSUAMG00000013721	SMG5	99	59.505	ENSPNYG00000013397	smg5	92	76.429	Pundamilia_nyererei
ENSUAMG00000013721	SMG5	99	61.797	ENSPNAG00000028363	smg5	99	61.137	Pygocentrus_nattereri
ENSUAMG00000013721	SMG5	100	90.265	ENSRNOG00000019590	Smg5	100	89.676	Rattus_norvegicus
ENSUAMG00000013721	SMG5	100	92.913	ENSRBIG00000027428	SMG5	100	93.504	Rhinopithecus_bieti
ENSUAMG00000013721	SMG5	100	92.815	ENSRROG00000030035	SMG5	100	93.406	Rhinopithecus_roxellana
ENSUAMG00000013721	SMG5	100	92.913	ENSSBOG00000033339	SMG5	100	93.602	Saimiri_boliviensis_boliviensis
ENSUAMG00000013721	SMG5	99	34.111	ENSSHAG00000009572	-	99	33.558	Sarcophilus_harrisii
ENSUAMG00000013721	SMG5	98	86.086	ENSSHAG00000014163	SMG5	100	87.187	Sarcophilus_harrisii
ENSUAMG00000013721	SMG5	64	38.235	ENSSHAG00000000935	-	92	39.024	Sarcophilus_harrisii
ENSUAMG00000013721	SMG5	87	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSUAMG00000013721	SMG5	95	77.566	ENSSFOG00015024175	smg5	99	66.043	Scleropages_formosus
ENSUAMG00000013721	SMG5	92	75.638	ENSSMAG00000013059	smg5	92	76.429	Scophthalmus_maximus
ENSUAMG00000013721	SMG5	99	59.272	ENSSDUG00000007122	smg5	92	75.708	Seriola_dumerili
ENSUAMG00000013721	SMG5	99	59.394	ENSSLDG00000011418	smg5	92	76.429	Seriola_lalandi_dorsalis
ENSUAMG00000013721	SMG5	90	80.153	ENSSARG00000012484	SMG5	100	80.044	Sorex_araneus
ENSUAMG00000013721	SMG5	93	75.657	ENSSPUG00000002260	SMG5	100	75.152	Sphenodon_punctatus
ENSUAMG00000013721	SMG5	91	76.832	ENSSPAG00000014266	smg5	99	63.822	Stegastes_partitus
ENSUAMG00000013721	SMG5	53	36.430	ENSSSCG00000037182	-	85	38.388	Sus_scrofa
ENSUAMG00000013721	SMG5	99	72.772	ENSSSCG00000039308	-	100	72.970	Sus_scrofa
ENSUAMG00000013721	SMG5	100	94.488	ENSSSCG00000006490	-	100	94.488	Sus_scrofa
ENSUAMG00000013721	SMG5	99	78.932	ENSTGUG00000003748	-	100	78.711	Taeniopygia_guttata
ENSUAMG00000013721	SMG5	99	62.645	ENSTRUG00000012580	smg5	92	74.413	Takifugu_rubripes
ENSUAMG00000013721	SMG5	99	63.911	ENSTNIG00000010303	smg5	93	73.318	Tetraodon_nigroviridis
ENSUAMG00000013721	SMG5	60	98.522	ENSTBEG00000002777	SMG5	60	98.522	Tupaia_belangeri
ENSUAMG00000013721	SMG5	100	89.075	ENSTTRG00000001401	SMG5	100	89.075	Tursiops_truncatus
ENSUAMG00000013721	SMG5	98	94.147	ENSUMAG00000018041	SMG5	97	94.147	Ursus_maritimus
ENSUAMG00000013721	SMG5	98	84.662	ENSVPAG00000009446	SMG5	99	84.662	Vicugna_pacos
ENSUAMG00000013721	SMG5	100	96.637	ENSVVUG00000005887	SMG5	100	96.637	Vulpes_vulpes
ENSUAMG00000013721	SMG5	76	64.565	ENSXETG00000033791	SMG5	99	63.131	Xenopus_tropicalis
ENSUAMG00000013721	SMG5	76	68.649	ENSXCOG00000004379	smg5	94	69.231	Xiphophorus_couchianus
ENSUAMG00000013721	SMG5	93	74.771	ENSXMAG00000013499	smg5	99	65.306	Xiphophorus_maculatus