EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000014213 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 5485 bases
Position: chrLZNR01016280.1:51894-57378
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000017905	LSM	PF01423.22	4.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000020039	LSM6-201	2238	-	ENSUAMP00000017905	122 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000014213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000014213's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000014213	LSM6	51	38.710	ENSUAMG00000001101	-	73	38.710
ENSUAMG00000014213	LSM6	51	48.387	ENSUAMG00000008176	-	76	47.458

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000014213	LSM6	64	91.026	ENSG00000164167	LSM6	98	91.026	Homo_sapiens
ENSUAMG00000014213	LSM6	64	88.462	ENSAPOG00000019832	lsm6	98	88.462	Acanthochromis_polyacanthus
ENSUAMG00000014213	LSM6	64	91.026	ENSAMEG00000016671	LSM6	98	91.026	Ailuropoda_melanoleuca
ENSUAMG00000014213	LSM6	64	88.462	ENSACIG00000016711	lsm6	98	88.462	Amphilophus_citrinellus
ENSUAMG00000014213	LSM6	64	88.462	ENSAOCG00000002110	lsm6	50	88.462	Amphiprion_ocellaris
ENSUAMG00000014213	LSM6	61	91.892	ENSAPEG00000023992	lsm6	97	91.892	Amphiprion_percula
ENSUAMG00000014213	LSM6	64	88.462	ENSATEG00000012610	lsm6	98	88.462	Anabas_testudineus
ENSUAMG00000014213	LSM6	61	90.667	ENSAPLG00000012594	LSM6	96	90.667	Anas_platyrhynchos
ENSUAMG00000014213	LSM6	64	91.026	ENSACAG00000004004	LSM6	98	91.026	Anolis_carolinensis
ENSUAMG00000014213	LSM6	53	90.769	ENSANAG00000021839	-	87	90.769	Aotus_nancymaae
ENSUAMG00000014213	LSM6	64	91.026	ENSANAG00000030568	-	98	91.026	Aotus_nancymaae
ENSUAMG00000014213	LSM6	64	88.462	ENSACLG00000025621	lsm6	98	88.462	Astatotilapia_calliptera
ENSUAMG00000014213	LSM6	64	88.462	ENSAMXG00000038738	lsm6	98	88.462	Astyanax_mexicanus
ENSUAMG00000014213	LSM6	64	84.615	ENSBTAG00000052085	-	98	84.615	Bos_taurus
ENSUAMG00000014213	LSM6	64	91.026	ENSBTAG00000014060	LSM6	98	91.026	Bos_taurus
ENSUAMG00000014213	LSM6	54	83.333	WBGene00003080	lsm-6	86	83.333	Caenorhabditis_elegans
ENSUAMG00000014213	LSM6	64	91.026	ENSCJAG00000002482	LSM6	98	91.026	Callithrix_jacchus
ENSUAMG00000014213	LSM6	64	91.026	ENSCAFG00000007738	LSM6	98	91.026	Canis_familiaris
ENSUAMG00000014213	LSM6	64	91.026	ENSCAFG00020025902	LSM6	98	91.026	Canis_lupus_dingo
ENSUAMG00000014213	LSM6	57	100.000	ENSCHIG00000012864	-	97	100.000	Capra_hircus
ENSUAMG00000014213	LSM6	64	74.359	ENSCHIG00000024198	-	92	74.359	Capra_hircus
ENSUAMG00000014213	LSM6	64	91.026	ENSCHIG00000010334	-	98	91.026	Capra_hircus
ENSUAMG00000014213	LSM6	57	86.957	ENSTSYG00000012759	-	91	86.957	Carlito_syrichta
ENSUAMG00000014213	LSM6	64	91.026	ENSTSYG00000026972	LSM6	98	91.026	Carlito_syrichta
ENSUAMG00000014213	LSM6	53	96.923	ENSCAPG00000011179	-	100	96.923	Cavia_aperea
ENSUAMG00000014213	LSM6	64	91.026	ENSCAPG00000008104	LSM6	98	91.026	Cavia_aperea
ENSUAMG00000014213	LSM6	64	91.026	ENSCPOG00000032655	LSM6	98	91.026	Cavia_porcellus
ENSUAMG00000014213	LSM6	66	88.750	ENSCCAG00000020665	-	100	88.750	Cebus_capucinus
ENSUAMG00000014213	LSM6	64	91.026	ENSCCAG00000036437	LSM6	98	91.026	Cebus_capucinus
ENSUAMG00000014213	LSM6	64	91.026	ENSCATG00000002770	-	98	91.026	Cercocebus_atys
ENSUAMG00000014213	LSM6	50	83.607	ENSCATG00000038799	-	80	83.607	Cercocebus_atys
ENSUAMG00000014213	LSM6	57	79.710	ENSCLAG00000005685	-	97	79.710	Chinchilla_lanigera
ENSUAMG00000014213	LSM6	64	91.026	ENSCLAG00000005495	LSM6	98	91.026	Chinchilla_lanigera
ENSUAMG00000014213	LSM6	64	91.026	ENSCSAG00000003421	LSM6	98	91.026	Chlorocebus_sabaeus
ENSUAMG00000014213	LSM6	64	91.026	ENSCPBG00000027472	LSM6	82	91.026	Chrysemys_picta_bellii
ENSUAMG00000014213	LSM6	61	89.333	ENSCING00000019152	-	91	89.333	Ciona_intestinalis
ENSUAMG00000014213	LSM6	63	88.312	ENSCSAVG00000002065	-	94	88.312	Ciona_savignyi
ENSUAMG00000014213	LSM6	64	91.026	ENSCANG00000006849	-	98	91.026	Colobus_angolensis_palliatus
ENSUAMG00000014213	LSM6	64	91.026	ENSCANG00000041263	-	98	91.026	Colobus_angolensis_palliatus
ENSUAMG00000014213	LSM6	50	81.967	ENSCANG00000035214	-	80	81.967	Colobus_angolensis_palliatus
ENSUAMG00000014213	LSM6	64	91.026	ENSCGRG00001017142	Lsm6	98	91.026	Cricetulus_griseus_chok1gshd
ENSUAMG00000014213	LSM6	64	91.026	ENSCGRG00000008320	Lsm6	98	91.026	Cricetulus_griseus_crigri
ENSUAMG00000014213	LSM6	64	88.462	ENSCSEG00000000423	lsm6	98	88.462	Cynoglossus_semilaevis
ENSUAMG00000014213	LSM6	64	88.462	ENSCVAG00000001592	lsm6	98	88.462	Cyprinodon_variegatus
ENSUAMG00000014213	LSM6	64	88.462	ENSDARG00000036995	lsm6	98	88.462	Danio_rerio
ENSUAMG00000014213	LSM6	80	80.612	ENSDNOG00000040186	-	100	80.612	Dasypus_novemcinctus
ENSUAMG00000014213	LSM6	64	89.744	ENSDNOG00000044848	-	98	89.744	Dasypus_novemcinctus
ENSUAMG00000014213	LSM6	64	91.026	ENSDORG00000000933	Lsm6	98	91.026	Dipodomys_ordii
ENSUAMG00000014213	LSM6	61	77.333	FBgn0034564	CG9344	95	77.333	Drosophila_melanogaster
ENSUAMG00000014213	LSM6	64	91.026	ENSEBUG00000017073	lsm6	98	91.026	Eptatretus_burgeri
ENSUAMG00000014213	LSM6	80	85.714	ENSEASG00005001533	LSM6	100	85.714	Equus_asinus_asinus
ENSUAMG00000014213	LSM6	64	91.026	ENSECAG00000021036	LSM6	98	91.026	Equus_caballus
ENSUAMG00000014213	LSM6	63	62.338	ENSEEUG00000002101	LSM6	97	62.338	Erinaceus_europaeus
ENSUAMG00000014213	LSM6	64	88.462	ENSELUG00000014301	LSM6	98	88.462	Esox_lucius
ENSUAMG00000014213	LSM6	64	91.026	ENSFCAG00000003047	LSM6	98	91.026	Felis_catus
ENSUAMG00000014213	LSM6	64	91.026	ENSFALG00000005509	LSM6	90	91.026	Ficedula_albicollis
ENSUAMG00000014213	LSM6	64	91.026	ENSFDAG00000020913	-	98	91.026	Fukomys_damarensis
ENSUAMG00000014213	LSM6	64	80.769	ENSFDAG00000019073	-	98	80.769	Fukomys_damarensis
ENSUAMG00000014213	LSM6	57	97.143	ENSFHEG00000007948	lsm6	93	97.143	Fundulus_heteroclitus
ENSUAMG00000014213	LSM6	64	88.462	ENSGMOG00000015550	lsm6	98	88.462	Gadus_morhua
ENSUAMG00000014213	LSM6	64	91.026	ENSGALG00000009985	LSM6	98	91.026	Gallus_gallus
ENSUAMG00000014213	LSM6	57	97.101	ENSGAFG00000017763	lsm6	98	88.462	Gambusia_affinis
ENSUAMG00000014213	LSM6	64	88.462	ENSGACG00000017223	lsm6	98	88.462	Gasterosteus_aculeatus
ENSUAMG00000014213	LSM6	64	91.026	ENSGAGG00000020980	LSM6	98	91.026	Gopherus_agassizii
ENSUAMG00000014213	LSM6	64	91.026	ENSGGOG00000001310	LSM6	98	91.026	Gorilla_gorilla
ENSUAMG00000014213	LSM6	64	88.462	ENSHBUG00000008618	lsm6	98	88.462	Haplochromis_burtoni
ENSUAMG00000014213	LSM6	64	91.026	ENSHGLG00000000205	LSM6	98	91.026	Heterocephalus_glaber_female
ENSUAMG00000014213	LSM6	64	91.026	ENSHGLG00100014341	LSM6	98	91.026	Heterocephalus_glaber_male
ENSUAMG00000014213	LSM6	64	88.462	ENSHCOG00000005591	lsm6	98	88.462	Hippocampus_comes
ENSUAMG00000014213	LSM6	64	87.179	ENSIPUG00000004508	lsm6	98	87.179	Ictalurus_punctatus
ENSUAMG00000014213	LSM6	64	91.026	ENSSTOG00000002678	LSM6	98	91.026	Ictidomys_tridecemlineatus
ENSUAMG00000014213	LSM6	64	91.026	ENSJJAG00000013845	-	98	91.026	Jaculus_jaculus
ENSUAMG00000014213	LSM6	61	69.333	ENSJJAG00000016942	-	95	69.333	Jaculus_jaculus
ENSUAMG00000014213	LSM6	64	82.051	ENSJJAG00000011211	-	98	82.051	Jaculus_jaculus
ENSUAMG00000014213	LSM6	64	88.462	ENSKMAG00000004105	lsm6	98	88.462	Kryptolebias_marmoratus
ENSUAMG00000014213	LSM6	64	88.462	ENSLBEG00000018441	lsm6	98	88.462	Labrus_bergylta
ENSUAMG00000014213	LSM6	64	91.026	ENSLACG00000006937	LSM6	98	91.026	Latimeria_chalumnae
ENSUAMG00000014213	LSM6	64	87.179	ENSLOCG00000017683	-	98	87.179	Lepisosteus_oculatus
ENSUAMG00000014213	LSM6	64	88.462	ENSLOCG00000008852	lsm6	98	88.462	Lepisosteus_oculatus
ENSUAMG00000014213	LSM6	64	91.026	ENSLAFG00000001952	LSM6	98	91.026	Loxodonta_africana
ENSUAMG00000014213	LSM6	64	91.026	ENSMFAG00000033073	LSM6	98	91.026	Macaca_fascicularis
ENSUAMG00000014213	LSM6	64	91.026	ENSMNEG00000034820	-	98	91.026	Macaca_nemestrina
ENSUAMG00000014213	LSM6	50	85.246	ENSMNEG00000040412	-	80	85.246	Macaca_nemestrina
ENSUAMG00000014213	LSM6	64	91.026	ENSMLEG00000035153	LSM6	98	91.026	Mandrillus_leucophaeus
ENSUAMG00000014213	LSM6	64	88.462	ENSMAMG00000014029	lsm6	98	88.462	Mastacembelus_armatus
ENSUAMG00000014213	LSM6	64	88.462	ENSMZEG00005009146	lsm6	98	88.462	Maylandia_zebra
ENSUAMG00000014213	LSM6	64	91.026	ENSMGAG00000003802	LSM6	98	91.026	Meleagris_gallopavo
ENSUAMG00000014213	LSM6	64	91.026	ENSMAUG00000014938	Lsm6	98	91.026	Mesocricetus_auratus
ENSUAMG00000014213	LSM6	64	91.026	ENSMICG00000042599	LSM6	98	91.026	Microcebus_murinus
ENSUAMG00000014213	LSM6	70	83.529	ENSMICG00000047411	-	100	83.529	Microcebus_murinus
ENSUAMG00000014213	LSM6	64	91.026	ENSMOCG00000020049	Lsm6	98	91.026	Microtus_ochrogaster
ENSUAMG00000014213	LSM6	57	92.754	ENSMMOG00000007379	-	87	92.754	Mola_mola
ENSUAMG00000014213	LSM6	64	88.462	ENSMMOG00000005470	lsm6	98	88.462	Mola_mola
ENSUAMG00000014213	LSM6	64	91.026	ENSMODG00000000526	LSM6	98	91.026	Monodelphis_domestica
ENSUAMG00000014213	LSM6	57	97.101	ENSMALG00000002419	lsm6	98	88.462	Monopterus_albus
ENSUAMG00000014213	LSM6	64	91.026	MGP_CAROLIEiJ_G0031245	Lsm6	98	91.026	Mus_caroli
ENSUAMG00000014213	LSM6	64	91.026	ENSMUSG00000031683	Lsm6	98	91.026	Mus_musculus
ENSUAMG00000014213	LSM6	64	91.026	MGP_PahariEiJ_G0022851	Lsm6	98	91.026	Mus_pahari
ENSUAMG00000014213	LSM6	64	91.026	MGP_SPRETEiJ_G0032365	Lsm6	98	91.026	Mus_spretus
ENSUAMG00000014213	LSM6	64	91.026	ENSMPUG00000006936	LSM6	91	91.026	Mustela_putorius_furo
ENSUAMG00000014213	LSM6	64	91.026	ENSMLUG00000026355	LSM6	98	91.026	Myotis_lucifugus
ENSUAMG00000014213	LSM6	64	91.026	ENSNGAG00000019116	Lsm6	98	91.026	Nannospalax_galili
ENSUAMG00000014213	LSM6	63	90.909	ENSNBRG00000004887	lsm6	98	88.462	Neolamprologus_brichardi
ENSUAMG00000014213	LSM6	64	91.026	ENSNLEG00000005584	LSM6	98	91.026	Nomascus_leucogenys
ENSUAMG00000014213	LSM6	57	100.000	ENSOPRG00000011199	LSM6	87	100.000	Ochotona_princeps
ENSUAMG00000014213	LSM6	64	89.744	ENSODEG00000019419	-	98	89.744	Octodon_degus
ENSUAMG00000014213	LSM6	64	80.769	ENSODEG00000018684	-	99	80.769	Octodon_degus
ENSUAMG00000014213	LSM6	64	89.744	ENSODEG00000002307	-	98	89.744	Octodon_degus
ENSUAMG00000014213	LSM6	64	88.462	ENSODEG00000020420	-	98	88.462	Octodon_degus
ENSUAMG00000014213	LSM6	64	88.462	ENSONIG00000010005	lsm6	98	88.462	Oreochromis_niloticus
ENSUAMG00000014213	LSM6	62	64.474	ENSOANG00000006895	-	97	64.474	Ornithorhynchus_anatinus
ENSUAMG00000014213	LSM6	62	64.474	ENSOANG00000006894	-	97	64.474	Ornithorhynchus_anatinus
ENSUAMG00000014213	LSM6	64	87.179	ENSORLG00000024158	lsm6	98	87.179	Oryzias_latipes
ENSUAMG00000014213	LSM6	66	85.185	ENSORLG00020017383	lsm6	100	85.185	Oryzias_latipes_hni
ENSUAMG00000014213	LSM6	64	87.179	ENSORLG00015016903	lsm6	98	87.179	Oryzias_latipes_hsok
ENSUAMG00000014213	LSM6	64	88.462	ENSOMEG00000000074	lsm6	98	88.462	Oryzias_melastigma
ENSUAMG00000014213	LSM6	64	91.026	ENSOGAG00000033153	-	98	91.026	Otolemur_garnettii
ENSUAMG00000014213	LSM6	64	91.026	ENSOGAG00000026665	-	98	91.026	Otolemur_garnettii
ENSUAMG00000014213	LSM6	64	84.615	ENSOARG00000011641	-	91	84.615	Ovis_aries
ENSUAMG00000014213	LSM6	63	96.104	ENSOARG00000008509	-	99	96.104	Ovis_aries
ENSUAMG00000014213	LSM6	64	91.026	ENSPPAG00000037929	LSM6	98	91.026	Pan_paniscus
ENSUAMG00000014213	LSM6	64	91.026	ENSPPRG00000012806	LSM6	98	91.026	Panthera_pardus
ENSUAMG00000014213	LSM6	64	91.026	ENSPTIG00000019769	LSM6	98	91.026	Panthera_tigris_altaica
ENSUAMG00000014213	LSM6	64	91.026	ENSPTRG00000016488	LSM6	98	91.026	Pan_troglodytes
ENSUAMG00000014213	LSM6	64	91.026	ENSPANG00000006552	LSM6	98	91.026	Papio_anubis
ENSUAMG00000014213	LSM6	64	88.462	ENSPKIG00000016176	lsm6	98	88.462	Paramormyrops_kingsleyae
ENSUAMG00000014213	LSM6	64	91.026	ENSPSIG00000016942	LSM6	98	91.026	Pelodiscus_sinensis
ENSUAMG00000014213	LSM6	64	88.462	ENSPMGG00000018004	lsm6	98	88.462	Periophthalmus_magnuspinnatus
ENSUAMG00000014213	LSM6	64	91.026	ENSPEMG00000012410	Lsm6	98	91.026	Peromyscus_maniculatus_bairdii
ENSUAMG00000014213	LSM6	64	91.026	ENSPMAG00000006949	lsm6	98	91.026	Petromyzon_marinus
ENSUAMG00000014213	LSM6	60	98.630	ENSPCIG00000023469	LSM6	85	98.630	Phascolarctos_cinereus
ENSUAMG00000014213	LSM6	64	88.462	ENSPFOG00000008881	lsm6	98	88.462	Poecilia_formosa
ENSUAMG00000014213	LSM6	64	88.462	ENSPLAG00000003202	lsm6	98	88.462	Poecilia_latipinna
ENSUAMG00000014213	LSM6	64	88.462	ENSPMEG00000004000	lsm6	98	88.462	Poecilia_mexicana
ENSUAMG00000014213	LSM6	64	88.462	ENSPREG00000023235	lsm6	98	88.462	Poecilia_reticulata
ENSUAMG00000014213	LSM6	64	91.026	ENSPPYG00000015105	LSM6	98	91.026	Pongo_abelii
ENSUAMG00000014213	LSM6	64	91.026	ENSPCOG00000013899	LSM6	98	91.026	Propithecus_coquereli
ENSUAMG00000014213	LSM6	57	97.143	ENSPNYG00000012614	lsm6	98	88.462	Pundamilia_nyererei
ENSUAMG00000014213	LSM6	64	88.462	ENSPNAG00000018779	lsm6	98	88.462	Pygocentrus_nattereri
ENSUAMG00000014213	LSM6	64	91.026	ENSRNOG00000049370	LOC100360750	98	91.026	Rattus_norvegicus
ENSUAMG00000014213	LSM6	64	91.026	ENSRNOG00000030374	Lsm6	98	91.026	Rattus_norvegicus
ENSUAMG00000014213	LSM6	64	91.026	ENSRBIG00000027878	LSM6	98	91.026	Rhinopithecus_bieti
ENSUAMG00000014213	LSM6	64	91.026	ENSRROG00000024868	LSM6	98	91.026	Rhinopithecus_roxellana
ENSUAMG00000014213	LSM6	55	40.845	YDR378C	-	81	42.857	Saccharomyces_cerevisiae
ENSUAMG00000014213	LSM6	64	91.026	ENSSBOG00000021229	-	98	91.026	Saimiri_boliviensis_boliviensis
ENSUAMG00000014213	LSM6	64	65.385	ENSSBOG00000028103	-	97	65.385	Saimiri_boliviensis_boliviensis
ENSUAMG00000014213	LSM6	64	88.462	ENSSFOG00015016480	lsm6	98	88.462	Scleropages_formosus
ENSUAMG00000014213	LSM6	57	97.101	ENSSMAG00000004550	lsm6	90	97.101	Scophthalmus_maximus
ENSUAMG00000014213	LSM6	60	93.151	ENSSLDG00000004136	-	63	93.151	Seriola_lalandi_dorsalis
ENSUAMG00000014213	LSM6	64	88.462	ENSSLDG00000020533	lsm6	81	88.462	Seriola_lalandi_dorsalis
ENSUAMG00000014213	LSM6	64	91.026	ENSSPUG00000008657	LSM6	98	91.026	Sphenodon_punctatus
ENSUAMG00000014213	LSM6	64	88.462	ENSSPAG00000003246	lsm6	98	88.462	Stegastes_partitus
ENSUAMG00000014213	LSM6	64	91.026	ENSSSCG00000035973	LSM6	98	91.026	Sus_scrofa
ENSUAMG00000014213	LSM6	64	91.026	ENSTGUG00000002663	LSM6	98	91.026	Taeniopygia_guttata
ENSUAMG00000014213	LSM6	64	88.462	ENSTRUG00000023398	lsm6	98	88.462	Takifugu_rubripes
ENSUAMG00000014213	LSM6	64	88.462	ENSTNIG00000017725	lsm6	98	88.462	Tetraodon_nigroviridis
ENSUAMG00000014213	LSM6	64	91.026	ENSTTRG00000004609	LSM6	98	91.026	Tursiops_truncatus
ENSUAMG00000014213	LSM6	100	100.000	ENSUMAG00000015727	LSM6	100	100.000	Ursus_maritimus
ENSUAMG00000014213	LSM6	64	91.026	ENSVPAG00000006922	LSM6	98	91.026	Vicugna_pacos
ENSUAMG00000014213	LSM6	64	91.026	ENSVVUG00000009254	LSM6	67	91.026	Vulpes_vulpes
ENSUAMG00000014213	LSM6	64	91.026	ENSXETG00000023683	lsm6	98	91.026	Xenopus_tropicalis
ENSUAMG00000014213	LSM6	57	97.143	ENSXMAG00000009606	lsm6	91	97.143	Xiphophorus_maculatus