EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSUAMG00000015676 (Gene tree)
Gene ID
-
Gene Symbol
RPA1
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Ursus_americanus
Status
putative
Strand
Plus strand
Length
69460 bases
Position
chrLZNR01003796.1:144804-214263
Accession
10289
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUAMP00000021083tRNA_anti-codonPF01336.257.8e-1211
ENSUAMP00000021048tRNA_anti-codonPF01336.259.5e-1211
ENSUAMP00000020960tRNA_anti-codonPF01336.259.5e-1211
ENSUAMP00000021063tRNA_anti-codonPF01336.251e-1111
ENSUAMP00000021044tRNA_anti-codonPF01336.251e-1111
ENSUAMP00000021047tRNA_anti-codonPF01336.251.2e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUAMT00000023552RPA1-2062058-ENSUAMP00000021083685 (aa)--
ENSUAMT00000023524RPA1-2051758-ENSUAMP00000021063585 (aa)--
ENSUAMT00000023417RPA1-2011695-ENSUAMP00000020960525 (aa)--
ENSUAMT00000023504RPA1-2021770-ENSUAMP00000021044589 (aa)--
ENSUAMT00000023509RPA1-2041743-ENSUAMP00000021048580 (aa)--
ENSUAMT00000023508RPA1-2031884-ENSUAMP00000021047627 (aa)--
Gene Model
Click here to download ENSUAMG00000015676's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000015676's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUAMG00000015676RPA19569.231ENSAPOG00000011658rpa18869.231Acanthochromis_polyacanthus
ENSUAMG00000015676RPA19173.077ENSAPOG00000019409RPA17373.077Acanthochromis_polyacanthus
ENSUAMG00000015676RPA19798.242ENSAMEG00000007706RPA18898.711Ailuropoda_melanoleuca
ENSUAMG00000015676RPA18975.000ENSACIG00000007277rpa18775.000Amphilophus_citrinellus
ENSUAMG00000015676RPA19476.923ENSACIG00000012881RPA18976.923Amphilophus_citrinellus
ENSUAMG00000015676RPA19575.000ENSAOCG00000009003RPA18775.000Amphiprion_ocellaris
ENSUAMG00000015676RPA19569.231ENSAOCG00000023376rpa18969.231Amphiprion_ocellaris
ENSUAMG00000015676RPA19175.000ENSAPEG00000019132RPA17675.000Amphiprion_percula
ENSUAMG00000015676RPA19571.154ENSAPEG00000008634rpa18871.154Amphiprion_percula
ENSUAMG00000015676RPA19576.923ENSATEG00000006443RPA18776.923Anabas_testudineus
ENSUAMG00000015676RPA19371.154ENSATEG00000022024rpa18871.154Anabas_testudineus
ENSUAMG00000015676RPA19788.235ENSAPLG00000012442RPA19088.235Anas_platyrhynchos
ENSUAMG00000015676RPA19782.692ENSACAG00000014490RPA18782.692Anolis_carolinensis
ENSUAMG00000015676RPA19792.308ENSANAG00000023456RPA19092.308Aotus_nancymaae
ENSUAMG00000015676RPA19575.000ENSACLG00000005223RPA18775.000Astatotilapia_calliptera
ENSUAMG00000015676RPA19275.000ENSACLG00000006640rpa18875.000Astatotilapia_calliptera
ENSUAMG00000015676RPA19776.471ENSAMXG00000008418rpa18876.471Astyanax_mexicanus
ENSUAMG00000015676RPA19991.908ENSBTAG00000009711RPA18992.070Bos_taurus
ENSUAMG00000015676RPA17030.583WBGene00017546rpa-17933.600Caenorhabditis_elegans
ENSUAMG00000015676RPA19992.308ENSCJAG00000001848RPA19092.308Callithrix_jacchus
ENSUAMG00000015676RPA19995.568ENSCAFG00000019249RPA18896.154Canis_familiaris
ENSUAMG00000015676RPA19995.568ENSCAFG00020009847RPA18896.154Canis_lupus_dingo
ENSUAMG00000015676RPA19991.908ENSCHIG00000026308RPA18992.308Capra_hircus
ENSUAMG00000015676RPA19798.077ENSTSYG00000003482-8898.077Carlito_syrichta
ENSUAMG00000015676RPA19790.385ENSCPOG00000000035RPA18893.617Cavia_porcellus
ENSUAMG00000015676RPA19792.308ENSCCAG00000010981RPA18693.478Cebus_capucinus
ENSUAMG00000015676RPA19792.308ENSCLAG00000015045-8892.308Chinchilla_lanigera
ENSUAMG00000015676RPA19792.308ENSCLAG00000005185-8992.308Chinchilla_lanigera
ENSUAMG00000015676RPA19790.385ENSCSAG00000013833RPA18790.385Chlorocebus_sabaeus
ENSUAMG00000015676RPA19498.077ENSCHOG00000013540-9098.077Choloepus_hoffmanni
ENSUAMG00000015676RPA17398.077ENSCHOG00000009454-8698.077Choloepus_hoffmanni
ENSUAMG00000015676RPA19786.538ENSCPBG00000020377RPA18986.538Chrysemys_picta_bellii
ENSUAMG00000015676RPA19748.077ENSCING00000023482-8748.077Ciona_intestinalis
ENSUAMG00000015676RPA19789.689ENSCANG00000030911RPA18993.478Colobus_angolensis_palliatus
ENSUAMG00000015676RPA19794.231ENSCGRG00001008197Rpa18994.231Cricetulus_griseus_chok1gshd
ENSUAMG00000015676RPA17894.231ENSCGRG00000000582Rpa18894.231Cricetulus_griseus_crigri
ENSUAMG00000015676RPA19672.000ENSCSEG00000013066rpa18872.000Cynoglossus_semilaevis
ENSUAMG00000015676RPA19771.154ENSCSEG00000012726RPA18871.154Cynoglossus_semilaevis
ENSUAMG00000015676RPA19571.154ENSCVAG00000019431rpa19863.043Cyprinodon_variegatus
ENSUAMG00000015676RPA19575.000ENSCVAG00000013446-8775.000Cyprinodon_variegatus
ENSUAMG00000015676RPA19680.000ENSDARG00000003938rpa18780.000Danio_rerio
ENSUAMG00000015676RPA19798.077ENSDNOG00000017218RPA18898.077Dasypus_novemcinctus
ENSUAMG00000015676RPA19792.308ENSDORG00000006199Rpa18992.308Dipodomys_ordii
ENSUAMG00000015676RPA19747.170FBgn0010173RpA-708754.717Drosophila_melanogaster
ENSUAMG00000015676RPA18098.039ENSETEG00000017608RPA17198.039Echinops_telfairi
ENSUAMG00000015676RPA19894.231ENSEASG00005009372RPA19095.745Equus_asinus_asinus
ENSUAMG00000015676RPA19993.064ENSECAG00000023886RPA18894.231Equus_caballus
ENSUAMG00000015676RPA17094.231ENSEEUG00000002186-5894.231Erinaceus_europaeus
ENSUAMG00000015676RPA19773.077ENSELUG00000021071rpa18873.077Esox_lucius
ENSUAMG00000015676RPA18780.769ENSELUG00000006136RPA18880.769Esox_lucius
ENSUAMG00000015676RPA19796.154ENSFCAG00000006306RPA18896.154Felis_catus
ENSUAMG00000015676RPA19784.314ENSFALG00000006575RPA19678.723Ficedula_albicollis
ENSUAMG00000015676RPA19794.231ENSFDAG00000007720RPA18994.231Fukomys_damarensis
ENSUAMG00000015676RPA19571.154ENSFHEG00000003580rpa19563.830Fundulus_heteroclitus
ENSUAMG00000015676RPA19571.154ENSGMOG00000010382rpa18571.154Gadus_morhua
ENSUAMG00000015676RPA19786.275ENSGALG00000003072RPA18886.275Gallus_gallus
ENSUAMG00000015676RPA19573.077ENSGAFG00000012916rpa18673.077Gambusia_affinis
ENSUAMG00000015676RPA19767.308ENSGAFG00000020953RPA18863.043Gambusia_affinis
ENSUAMG00000015676RPA19769.231ENSGACG00000010856rpa18869.231Gasterosteus_aculeatus
ENSUAMG00000015676RPA19784.615ENSGAGG00000013611RPA18884.615Gopherus_agassizii
ENSUAMG00000015676RPA19790.661ENSGGOG00000014186RPA18793.478Gorilla_gorilla
ENSUAMG00000015676RPA19375.000ENSHBUG00000009348RPA18975.000Haplochromis_burtoni
ENSUAMG00000015676RPA19575.000ENSHBUG00000017773rpa18875.000Haplochromis_burtoni
ENSUAMG00000015676RPA19790.385ENSHGLG00000008846RPA18893.617Heterocephalus_glaber_female
ENSUAMG00000015676RPA19790.385ENSHGLG00100017755-8893.617Heterocephalus_glaber_male
ENSUAMG00000015676RPA19788.462ENSHGLG00100000799-8888.462Heterocephalus_glaber_male
ENSUAMG00000015676RPA19395.745ENSHGLG00100002005-9095.745Heterocephalus_glaber_male
ENSUAMG00000015676RPA19765.385ENSHCOG00000000351RPA18765.385Hippocampus_comes
ENSUAMG00000015676RPA19565.385ENSHCOG00000001401rpa18665.385Hippocampus_comes
ENSUAMG00000015676RPA19672.549ENSIPUG00000004400rpa19663.830Ictalurus_punctatus
ENSUAMG00000015676RPA19892.308ENSSTOG00000022475RPA19095.652Ictidomys_tridecemlineatus
ENSUAMG00000015676RPA19492.308ENSJJAG00000000876Rpa18893.617Jaculus_jaculus
ENSUAMG00000015676RPA19575.000ENSKMAG00000000234RPA18675.000Kryptolebias_marmoratus
ENSUAMG00000015676RPA19569.231ENSKMAG00000005605rpa18669.231Kryptolebias_marmoratus
ENSUAMG00000015676RPA19378.846ENSLBEG00000002281RPA16978.846Labrus_bergylta
ENSUAMG00000015676RPA19569.231ENSLBEG00000021604rpa18669.231Labrus_bergylta
ENSUAMG00000015676RPA18079.592ENSLACG00000007210RPA19879.592Latimeria_chalumnae
ENSUAMG00000015676RPA19580.769ENSLOCG00000006397rpa18680.769Lepisosteus_oculatus
ENSUAMG00000015676RPA19794.231ENSLAFG00000015354RPA18994.231Loxodonta_africana
ENSUAMG00000015676RPA19689.526ENSMFAG00000036138-10092.308Macaca_fascicularis
ENSUAMG00000015676RPA19790.385ENSMMUG00000002442-8890.385Macaca_mulatta
ENSUAMG00000015676RPA19890.385ENSMMUG00000011604-8991.489Macaca_mulatta
ENSUAMG00000015676RPA19590.385ENSMNEG00000031632-8891.489Macaca_nemestrina
ENSUAMG00000015676RPA19788.462ENSMNEG00000029837-8888.889Macaca_nemestrina
ENSUAMG00000015676RPA19790.385ENSMLEG00000038768-8991.489Mandrillus_leucophaeus
ENSUAMG00000015676RPA19573.077ENSMAMG00000020097RPA17873.077Mastacembelus_armatus
ENSUAMG00000015676RPA19571.154ENSMAMG00000017993rpa18871.154Mastacembelus_armatus
ENSUAMG00000015676RPA19575.000ENSMZEG00005024731RPA18775.000Maylandia_zebra
ENSUAMG00000015676RPA19775.000ENSMZEG00005007551rpa18975.000Maylandia_zebra
ENSUAMG00000015676RPA19784.314ENSMGAG00000005315RPA19676.596Meleagris_gallopavo
ENSUAMG00000015676RPA19794.231ENSMAUG00000010474Rpa19094.231Mesocricetus_auratus
ENSUAMG00000015676RPA19796.154ENSMICG00000012867RPA18896.154Microcebus_murinus
ENSUAMG00000015676RPA19894.231ENSMOCG00000013019Rpa19094.231Microtus_ochrogaster
ENSUAMG00000015676RPA19674.510ENSMMOG00000010868RPA18774.510Mola_mola
ENSUAMG00000015676RPA19569.231ENSMMOG00000014292rpa18969.231Mola_mola
ENSUAMG00000015676RPA19790.385ENSMODG00000010549RPA18890.385Monodelphis_domestica
ENSUAMG00000015676RPA19573.077ENSMALG00000011453rpa18973.077Monopterus_albus
ENSUAMG00000015676RPA19576.923ENSMALG00000001208RPA17476.923Monopterus_albus
ENSUAMG00000015676RPA19796.154MGP_CAROLIEiJ_G0016734Rpa18996.154Mus_caroli
ENSUAMG00000015676RPA19796.154ENSMUSG00000000751Rpa19096.154Mus_musculus
ENSUAMG00000015676RPA19796.154MGP_PahariEiJ_G0017871Rpa18996.154Mus_pahari
ENSUAMG00000015676RPA19796.154MGP_SPRETEiJ_G0017577Rpa19096.154Mus_spretus
ENSUAMG00000015676RPA19798.077ENSMPUG00000013119RPA18898.077Mustela_putorius_furo
ENSUAMG00000015676RPA19692.308ENSMLUG00000006113RPA18693.617Myotis_lucifugus
ENSUAMG00000015676RPA19197.826ENSNGAG00000004522Rpa18495.745Nannospalax_galili
ENSUAMG00000015676RPA19375.000ENSNBRG00000020595rpa19865.957Neolamprologus_brichardi
ENSUAMG00000015676RPA19875.000ENSNBRG00000009672RPA18875.000Neolamprologus_brichardi
ENSUAMG00000015676RPA19792.308ENSNLEG00000017149RPA18892.308Nomascus_leucogenys
ENSUAMG00000015676RPA19788.462ENSMEUG00000006714RPA18988.462Notamacropus_eugenii
ENSUAMG00000015676RPA19492.308ENSODEG00000009038RPA18693.617Octodon_degus
ENSUAMG00000015676RPA19775.000ENSONIG00000013135rpa19668.085Oreochromis_niloticus
ENSUAMG00000015676RPA19788.462ENSOANG00000010880RPA19088.462Ornithorhynchus_anatinus
ENSUAMG00000015676RPA19796.154ENSOCUG00000001504RPA18996.154Oryctolagus_cuniculus
ENSUAMG00000015676RPA19575.000ENSORLG00000003368RPA18775.000Oryzias_latipes
ENSUAMG00000015676RPA19573.077ENSORLG00000004856rpa18673.077Oryzias_latipes
ENSUAMG00000015676RPA19573.077ENSORLG00020008980rpa18673.077Oryzias_latipes_hni
ENSUAMG00000015676RPA19573.077ENSORLG00020015284RPA17673.077Oryzias_latipes_hni
ENSUAMG00000015676RPA19573.077ENSORLG00015013982rpa18673.077Oryzias_latipes_hsok
ENSUAMG00000015676RPA17575.000ENSORLG00015005867-9175.000Oryzias_latipes_hsok
ENSUAMG00000015676RPA19575.000ENSORLG00015020383RPA18775.000Oryzias_latipes_hsok
ENSUAMG00000015676RPA19573.077ENSOMEG00000011040RPA18973.077Oryzias_melastigma
ENSUAMG00000015676RPA19675.000ENSOMEG00000004704rpa19375.000Oryzias_melastigma
ENSUAMG00000015676RPA19794.231ENSOGAG00000005581-9194.231Otolemur_garnettii
ENSUAMG00000015676RPA19286.316ENSOGAG00000029379-8492.857Otolemur_garnettii
ENSUAMG00000015676RPA19991.908ENSOARG00000014479RPA18892.308Ovis_aries
ENSUAMG00000015676RPA19989.017ENSPPAG00000039680RPA18891.489Pan_paniscus
ENSUAMG00000015676RPA19798.077ENSPPRG00000011807RPA18898.077Panthera_pardus
ENSUAMG00000015676RPA19798.077ENSPTIG00000007898RPA18898.077Panthera_tigris_altaica
ENSUAMG00000015676RPA19988.825ENSPTRG00000008539RPA18891.489Pan_troglodytes
ENSUAMG00000015676RPA19890.385ENSPANG00000024592RPA18891.489Papio_anubis
ENSUAMG00000015676RPA19778.846ENSPKIG00000008053rpa18778.846Paramormyrops_kingsleyae
ENSUAMG00000015676RPA19684.615ENSPSIG00000015617RPA19678.723Pelodiscus_sinensis
ENSUAMG00000015676RPA19773.077ENSPMGG00000011589rpa18973.077Periophthalmus_magnuspinnatus
ENSUAMG00000015676RPA19973.077ENSPMGG00000000543RPA19963.830Periophthalmus_magnuspinnatus
ENSUAMG00000015676RPA19894.231ENSPEMG00000021061Rpa19094.231Peromyscus_maniculatus_bairdii
ENSUAMG00000015676RPA19790.385ENSPCIG00000019049RPA18890.385Phascolarctos_cinereus
ENSUAMG00000015676RPA19571.154ENSPFOG00000003987rpa18671.154Poecilia_formosa
ENSUAMG00000015676RPA19571.154ENSPLAG00000004984rpa18671.154Poecilia_latipinna
ENSUAMG00000015676RPA19565.385ENSPLAG00000008844-8965.385Poecilia_latipinna
ENSUAMG00000015676RPA19571.154ENSPMEG00000020602rpa19865.217Poecilia_mexicana
ENSUAMG00000015676RPA19565.385ENSPMEG00000003627-8965.385Poecilia_mexicana
ENSUAMG00000015676RPA19567.391ENSPREG00000010174rpa18974.737Poecilia_reticulata
ENSUAMG00000015676RPA19167.308ENSPREG00000010119RPA17967.308Poecilia_reticulata
ENSUAMG00000015676RPA19796.154ENSPCOG00000001799RPA18896.154Propithecus_coquereli
ENSUAMG00000015676RPA19992.871ENSPVAG00000002149RPA18897.826Pteropus_vampyrus
ENSUAMG00000015676RPA19575.000ENSPNYG00000024165RPA18775.000Pundamilia_nyererei
ENSUAMG00000015676RPA19575.000ENSPNYG00000016316rpa19865.957Pundamilia_nyererei
ENSUAMG00000015676RPA19971.154ENSPNAG00000008599rpa19563.830Pygocentrus_nattereri
ENSUAMG00000015676RPA19794.231ENSRNOG00000003123Rpa19193.617Rattus_norvegicus
ENSUAMG00000015676RPA19988.054ENSRBIG00000036587RPA18891.489Rhinopithecus_bieti
ENSUAMG00000015676RPA19888.395ENSRROG00000043278RPA18891.489Rhinopithecus_roxellana
ENSUAMG00000015676RPA19831.450YAR007CRFA16054.386Saccharomyces_cerevisiae
ENSUAMG00000015676RPA19790.385ENSSBOG00000030233RPA18990.385Saimiri_boliviensis_boliviensis
ENSUAMG00000015676RPA19790.385ENSSHAG00000007969RPA18890.385Sarcophilus_harrisii
ENSUAMG00000015676RPA19778.846ENSSFOG00015005362rpa18478.846Scleropages_formosus
ENSUAMG00000015676RPA19675.000ENSSMAG00000019746RPA17475.000Scophthalmus_maximus
ENSUAMG00000015676RPA19573.077ENSSDUG00000011949rpa18673.077Seriola_dumerili
ENSUAMG00000015676RPA19176.923ENSSDUG00000016358RPA17276.923Seriola_dumerili
ENSUAMG00000015676RPA19573.077ENSSLDG00000011806rpa18673.077Seriola_lalandi_dorsalis
ENSUAMG00000015676RPA19176.923ENSSLDG00000020784RPA17176.923Seriola_lalandi_dorsalis
ENSUAMG00000015676RPA19194.118ENSSARG00000007506RPA18494.118Sorex_araneus
ENSUAMG00000015676RPA19686.538ENSSPUG00000007223RPA18986.538Sphenodon_punctatus
ENSUAMG00000015676RPA19573.077ENSSPAG00000011165RPA19665.217Stegastes_partitus
ENSUAMG00000015676RPA19569.231ENSSPAG00000009903rpa18669.231Stegastes_partitus
ENSUAMG00000015676RPA19794.231ENSSSCG00000017822RPA19094.231Sus_scrofa
ENSUAMG00000015676RPA19784.314ENSTGUG00000005775RPA19676.596Taeniopygia_guttata
ENSUAMG00000015676RPA19569.231ENSTRUG00000003616rpa18669.231Takifugu_rubripes
ENSUAMG00000015676RPA19075.000ENSTRUG00000000405RPA17175.000Takifugu_rubripes
ENSUAMG00000015676RPA19773.077ENSTNIG00000016199rpa18873.077Tetraodon_nigroviridis
ENSUAMG00000015676RPA18497.674ENSTBEG00000002709RPA17297.674Tupaia_belangeri
ENSUAMG00000015676RPA19798.077ENSTTRG00000001169RPA18898.077Tursiops_truncatus
ENSUAMG00000015676RPA19999.807ENSUMAG00000009328RPA188100.000Ursus_maritimus
ENSUAMG00000015676RPA19796.154ENSVPAG00000009443RPA18996.154Vicugna_pacos
ENSUAMG00000015676RPA19996.146ENSVVUG00000021715RPA18896.310Vulpes_vulpes
ENSUAMG00000015676RPA19684.615ENSXETG00000013538rpa18784.615Xenopus_tropicalis
ENSUAMG00000015676RPA19871.154ENSXCOG00000010068rpa19071.154Xiphophorus_couchianus
ENSUAMG00000015676RPA19367.308ENSXCOG00000009899-8767.308Xiphophorus_couchianus
ENSUAMG00000015676RPA19167.308ENSXMAG00000010333RPA17267.308Xiphophorus_maculatus
ENSUAMG00000015676RPA19571.154ENSXMAG00000004102rpa18971.154Xiphophorus_maculatus

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