EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000016662 (Gene tree)
Gene ID: -
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 19138 bases
Position: chrLZNR01005663.1:84431-103568
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000021283	CSD	PF00313.22	3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000023779	YBX3-201	822	-	ENSUAMP00000021283	273 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000016662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000016662's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000016662	YBX3	95	44.286	ENSUAMG00000015447	YBX1	79	52.941
ENSUAMG00000016662	YBX3	99	39.024	ENSUAMG00000018624	-	52	39.896

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000016662	YBX3	100	88.489	ENSG00000060138	YBX3	75	94.203	Homo_sapiens
ENSUAMG00000016662	YBX3	100	96.377	ENSAMEG00000009393	YBX3	79	96.377	Ailuropoda_melanoleuca
ENSUAMG00000016662	YBX3	100	66.187	ENSAPLG00000003147	YBX3	98	66.187	Anas_platyrhynchos
ENSUAMG00000016662	YBX3	100	88.489	ENSANAG00000024492	-	88	88.849	Aotus_nancymaae
ENSUAMG00000016662	YBX3	100	91.941	ENSBTAG00000009663	YBX3	73	91.941	Bos_taurus
ENSUAMG00000016662	YBX3	100	88.489	ENSCJAG00000021660	-	75	88.129	Callithrix_jacchus
ENSUAMG00000016662	YBX3	69	89.873	ENSCJAG00000033824	-	71	89.041	Callithrix_jacchus
ENSUAMG00000016662	YBX3	100	95.290	ENSCAFG00000013401	YBX3	82	94.531	Canis_familiaris
ENSUAMG00000016662	YBX3	100	95.971	ENSCAFG00020006412	YBX3	74	95.971	Canis_lupus_dingo
ENSUAMG00000016662	YBX3	100	91.304	ENSCHIG00000010863	YBX3	78	91.304	Capra_hircus
ENSUAMG00000016662	YBX3	100	54.710	ENSTSYG00000035821	-	70	48.432	Carlito_syrichta
ENSUAMG00000016662	YBX3	100	90.647	ENSTSYG00000004204	-	85	90.288	Carlito_syrichta
ENSUAMG00000016662	YBX3	100	87.365	ENSCAPG00000015039	YBX3	90	87.365	Cavia_aperea
ENSUAMG00000016662	YBX3	100	87.365	ENSCPOG00000011329	YBX3	82	87.365	Cavia_porcellus
ENSUAMG00000016662	YBX3	100	88.129	ENSCCAG00000016469	YBX3	75	87.770	Cebus_capucinus
ENSUAMG00000016662	YBX3	100	87.770	ENSCATG00000034411	YBX3	75	87.410	Cercocebus_atys
ENSUAMG00000016662	YBX3	100	88.087	ENSCLAG00000016030	YBX3	91	88.087	Chinchilla_lanigera
ENSUAMG00000016662	YBX3	100	88.129	ENSCSAG00000008744	YBX3	75	87.770	Chlorocebus_sabaeus
ENSUAMG00000016662	YBX3	100	77.256	ENSCPBG00000014147	YBX3	77	77.256	Chrysemys_picta_bellii
ENSUAMG00000016662	YBX3	100	88.849	ENSCANG00000036801	YBX3	88	89.209	Colobus_angolensis_palliatus
ENSUAMG00000016662	YBX3	100	90.253	ENSCGRG00001016148	Ybx3	76	90.253	Cricetulus_griseus_chok1gshd
ENSUAMG00000016662	YBX3	100	89.007	ENSCGRG00000004563	Ybx3	95	89.007	Cricetulus_griseus_crigri
ENSUAMG00000016662	YBX3	100	90.975	ENSDORG00000009103	Ybx3	78	90.975	Dipodomys_ordii
ENSUAMG00000016662	YBX3	100	81.429	ENSETEG00000002557	YBX3	98	79.496	Echinops_telfairi
ENSUAMG00000016662	YBX3	100	91.575	ENSEASG00005014726	YBX3	74	91.575	Equus_asinus_asinus
ENSUAMG00000016662	YBX3	100	95.604	ENSECAG00000013777	YBX3	74	95.604	Equus_caballus
ENSUAMG00000016662	YBX3	100	88.489	ENSEEUG00000010415	YBX3	98	88.849	Erinaceus_europaeus
ENSUAMG00000016662	YBX3	100	92.058	ENSFCAG00000027748	YBX3	74	91.697	Felis_catus
ENSUAMG00000016662	YBX3	100	61.786	ENSFALG00000003661	YBX3	97	59.075	Ficedula_albicollis
ENSUAMG00000016662	YBX3	100	84.116	ENSFDAG00000021192	YBX3	89	84.116	Fukomys_damarensis
ENSUAMG00000016662	YBX3	100	57.246	ENSGALG00000031890	YBX3	71	55.036	Gallus_gallus
ENSUAMG00000016662	YBX3	100	76.173	ENSGAGG00000017780	YBX3	77	76.173	Gopherus_agassizii
ENSUAMG00000016662	YBX3	100	88.489	ENSGGOG00000001352	YBX3	75	88.129	Gorilla_gorilla
ENSUAMG00000016662	YBX3	92	76.654	ENSHGLG00000015495	-	75	74.219	Heterocephalus_glaber_female
ENSUAMG00000016662	YBX3	100	74.021	ENSHGLG00000014798	-	82	75.089	Heterocephalus_glaber_female
ENSUAMG00000016662	YBX3	81	91.071	ENSHGLG00100003589	YBX3	84	63.899	Heterocephalus_glaber_male
ENSUAMG00000016662	YBX3	100	84.477	ENSSTOG00000002108	-	85	85.199	Ictidomys_tridecemlineatus
ENSUAMG00000016662	YBX3	100	85.921	ENSSTOG00000032577	-	78	85.921	Ictidomys_tridecemlineatus
ENSUAMG00000016662	YBX3	100	65.591	ENSJJAG00000014239	Ybx3	87	70.423	Jaculus_jaculus
ENSUAMG00000016662	YBX3	100	92.058	ENSLAFG00000017247	YBX3	80	91.045	Loxodonta_africana
ENSUAMG00000016662	YBX3	100	88.727	ENSMFAG00000039369	YBX3	75	87.770	Macaca_fascicularis
ENSUAMG00000016662	YBX3	100	88.129	ENSMMUG00000022469	YBX3	86	88.489	Macaca_mulatta
ENSUAMG00000016662	YBX3	100	88.727	ENSMNEG00000045109	YBX3	75	87.770	Macaca_nemestrina
ENSUAMG00000016662	YBX3	100	89.892	ENSMLEG00000033618	YBX3	78	89.892	Mandrillus_leucophaeus
ENSUAMG00000016662	YBX3	100	63.669	ENSMGAG00000014224	YBX3	97	62.590	Meleagris_gallopavo
ENSUAMG00000016662	YBX3	100	89.892	ENSMAUG00000012185	Ybx3	86	89.892	Mesocricetus_auratus
ENSUAMG00000016662	YBX3	89	82.022	ENSMICG00000031459	-	72	81.429	Microcebus_murinus
ENSUAMG00000016662	YBX3	100	93.502	ENSMICG00000038002	-	75	93.502	Microcebus_murinus
ENSUAMG00000016662	YBX3	100	90.253	ENSMOCG00000016291	Ybx3	90	90.253	Microtus_ochrogaster
ENSUAMG00000016662	YBX3	100	81.655	ENSMODG00000018248	YBX3	88	81.655	Monodelphis_domestica
ENSUAMG00000016662	YBX3	100	89.531	MGP_CAROLIEiJ_G0028947	Ybx3	76	89.531	Mus_caroli
ENSUAMG00000016662	YBX3	100	89.531	ENSMUSG00000030189	Ybx3	76	89.531	Mus_musculus
ENSUAMG00000016662	YBX3	100	90.253	MGP_PahariEiJ_G0022709	Ybx3	76	90.253	Mus_pahari
ENSUAMG00000016662	YBX3	100	89.892	MGP_SPRETEiJ_G0029994	Ybx3	76	89.892	Mus_spretus
ENSUAMG00000016662	YBX3	93	81.061	ENSMPUG00000011810	YBX3	75	75.439	Mustela_putorius_furo
ENSUAMG00000016662	YBX3	93	94.615	ENSMLUG00000007476	YBX3	97	94.615	Myotis_lucifugus
ENSUAMG00000016662	YBX3	98	85.401	ENSNGAG00000000710	Ybx3	60	85.401	Nannospalax_galili
ENSUAMG00000016662	YBX3	100	85.971	ENSNLEG00000034844	YBX3	79	83.813	Nomascus_leucogenys
ENSUAMG00000016662	YBX3	59	77.576	ENSMEUG00000002507	-	77	77.576	Notamacropus_eugenii
ENSUAMG00000016662	YBX3	100	82.310	ENSODEG00000017957	YBX3	81	82.310	Octodon_degus
ENSUAMG00000016662	YBX3	98	90.037	ENSOCUG00000001889	YBX3	74	94.531	Oryctolagus_cuniculus
ENSUAMG00000016662	YBX3	100	90.141	ENSOGAG00000013245	YBX3	75	90.141	Otolemur_garnettii
ENSUAMG00000016662	YBX3	100	81.295	ENSOARG00000020919	YBX3	94	81.295	Ovis_aries
ENSUAMG00000016662	YBX3	100	88.489	ENSPPAG00000039068	YBX3	77	88.849	Pan_paniscus
ENSUAMG00000016662	YBX3	100	92.419	ENSPPRG00000005859	YBX3	74	92.058	Panthera_pardus
ENSUAMG00000016662	YBX3	100	94.565	ENSPTIG00000005322	YBX3	78	94.565	Panthera_tigris_altaica
ENSUAMG00000016662	YBX3	100	88.489	ENSPTRG00000004681	YBX3	74	88.129	Pan_troglodytes
ENSUAMG00000016662	YBX3	100	87.770	ENSPANG00000010280	YBX3	75	87.410	Papio_anubis
ENSUAMG00000016662	YBX3	74	88.660	ENSPSIG00000009247	YBX3	88	88.608	Pelodiscus_sinensis
ENSUAMG00000016662	YBX3	100	90.614	ENSPEMG00000012132	-	87	90.614	Peromyscus_maniculatus_bairdii
ENSUAMG00000016662	YBX3	81	88.288	ENSPEMG00000010391	-	78	62.681	Peromyscus_maniculatus_bairdii
ENSUAMG00000016662	YBX3	93	81.250	ENSPCIG00000029949	YBX3	99	81.250	Phascolarctos_cinereus
ENSUAMG00000016662	YBX3	100	88.129	ENSPPYG00000004279	YBX3	75	87.770	Pongo_abelii
ENSUAMG00000016662	YBX3	71	89.394	ENSPCAG00000001397	YBX3	67	89.062	Procavia_capensis
ENSUAMG00000016662	YBX3	59	92.025	ENSPCOG00000011663	YBX3	64	92.025	Propithecus_coquereli
ENSUAMG00000016662	YBX3	100	75.812	ENSPVAG00000006740	YBX3	51	92.670	Pteropus_vampyrus
ENSUAMG00000016662	YBX3	100	90.614	ENSRNOG00000005480	Ybx3	76	90.614	Rattus_norvegicus
ENSUAMG00000016662	YBX3	100	88.129	ENSRBIG00000039208	YBX3	75	87.770	Rhinopithecus_bieti
ENSUAMG00000016662	YBX3	100	88.129	ENSRROG00000029638	YBX3	75	87.770	Rhinopithecus_roxellana
ENSUAMG00000016662	YBX3	100	90.614	ENSSBOG00000030573	YBX3	80	90.614	Saimiri_boliviensis_boliviensis
ENSUAMG00000016662	YBX3	100	77.113	ENSSHAG00000003262	YBX3	95	78.169	Sarcophilus_harrisii
ENSUAMG00000016662	YBX3	100	92.058	ENSSSCG00000000633	YBX3	73	91.697	Sus_scrofa
ENSUAMG00000016662	YBX3	100	64.388	ENSTGUG00000012047	YBX3	98	63.669	Taeniopygia_guttata
ENSUAMG00000016662	YBX3	100	90.647	ENSTBEG00000012570	YBX3	77	91.007	Tupaia_belangeri
ENSUAMG00000016662	YBX3	93	83.846	ENSTTRG00000008045	YBX3	98	83.462	Tursiops_truncatus
ENSUAMG00000016662	YBX3	100	96.739	ENSUMAG00000016118	YBX3	91	96.739	Ursus_maritimus
ENSUAMG00000016662	YBX3	100	66.065	ENSVPAG00000000876	YBX3	98	69.314	Vicugna_pacos
ENSUAMG00000016662	YBX3	100	95.604	ENSVVUG00000004956	YBX3	100	95.604	Vulpes_vulpes
ENSUAMG00000016662	YBX3	99	56.690	ENSXETG00000016239	ybx3	87	52.740	Xenopus_tropicalis