EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000016823 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 14743 bases
Position: chrLZNR01001193.1:329053-343795
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000021431	HVSL	PF09749.9	5.1e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000023949	USB1-201	1873	-	ENSUAMP00000021431	269 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000016823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000016823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000016823	USB1	100	82.528	ENSG00000103005	USB1	100	85.981	Homo_sapiens
ENSUAMG00000016823	USB1	98	48.387	ENSAPOG00000011942	usb1	83	51.931	Acanthochromis_polyacanthus
ENSUAMG00000016823	USB1	100	97.770	ENSAMEG00000017205	USB1	100	97.770	Ailuropoda_melanoleuca
ENSUAMG00000016823	USB1	84	55.752	ENSACIG00000012234	usb1	83	55.752	Amphilophus_citrinellus
ENSUAMG00000016823	USB1	97	50.000	ENSAOCG00000014831	usb1	82	52.361	Amphiprion_ocellaris
ENSUAMG00000016823	USB1	97	50.385	ENSAPEG00000000296	usb1	82	52.790	Amphiprion_percula
ENSUAMG00000016823	USB1	98	50.000	ENSATEG00000009348	usb1	86	52.049	Anabas_testudineus
ENSUAMG00000016823	USB1	83	69.912	ENSAPLG00000002756	USB1	100	70.354	Anas_platyrhynchos
ENSUAMG00000016823	USB1	84	62.445	ENSACAG00000015481	USB1	100	62.445	Anolis_carolinensis
ENSUAMG00000016823	USB1	100	82.156	ENSANAG00000035640	USB1	100	82.156	Aotus_nancymaae
ENSUAMG00000016823	USB1	83	54.464	ENSACLG00000020586	usb1	99	49.286	Astatotilapia_calliptera
ENSUAMG00000016823	USB1	84	52.444	ENSAMXG00000040146	usb1	75	52.444	Astyanax_mexicanus
ENSUAMG00000016823	USB1	100	84.015	ENSBTAG00000015758	USB1	100	83.271	Bos_taurus
ENSUAMG00000016823	USB1	100	84.015	ENSCJAG00000011733	USB1	100	84.015	Callithrix_jacchus
ENSUAMG00000016823	USB1	99	88.235	ENSCAFG00000008556	USB1	73	88.971	Canis_familiaris
ENSUAMG00000016823	USB1	99	86.765	ENSCAFG00020009263	USB1	99	84.477	Canis_lupus_dingo
ENSUAMG00000016823	USB1	100	83.271	ENSCHIG00000024290	USB1	100	82.528	Capra_hircus
ENSUAMG00000016823	USB1	100	85.874	ENSTSYG00000006997	USB1	100	85.874	Carlito_syrichta
ENSUAMG00000016823	USB1	86	69.397	ENSCAPG00000009057	USB1	100	69.397	Cavia_aperea
ENSUAMG00000016823	USB1	100	81.413	ENSCPOG00000014325	USB1	100	81.041	Cavia_porcellus
ENSUAMG00000016823	USB1	100	82.528	ENSCCAG00000022132	USB1	100	82.528	Cebus_capucinus
ENSUAMG00000016823	USB1	100	84.387	ENSCATG00000032174	USB1	100	84.015	Cercocebus_atys
ENSUAMG00000016823	USB1	65	88.068	ENSCLAG00000007363	USB1	100	88.068	Chinchilla_lanigera
ENSUAMG00000016823	USB1	100	85.130	ENSCSAG00000004783	USB1	100	84.758	Chlorocebus_sabaeus
ENSUAMG00000016823	USB1	100	61.511	ENSCPBG00000026943	USB1	100	63.441	Chrysemys_picta_bellii
ENSUAMG00000016823	USB1	83	31.250	ENSCING00000011490	-	86	31.250	Ciona_intestinalis
ENSUAMG00000016823	USB1	82	31.004	ENSCSAVG00000000894	-	82	31.004	Ciona_savignyi
ENSUAMG00000016823	USB1	100	83.271	ENSCANG00000037135	USB1	100	82.900	Colobus_angolensis_palliatus
ENSUAMG00000016823	USB1	100	82.900	ENSCGRG00001011243	USB1	100	82.900	Cricetulus_griseus_chok1gshd
ENSUAMG00000016823	USB1	100	82.900	ENSCGRG00000013252	USB1	100	82.900	Cricetulus_griseus_crigri
ENSUAMG00000016823	USB1	98	48.540	ENSCSEG00000013881	usb1	84	51.073	Cynoglossus_semilaevis
ENSUAMG00000016823	USB1	83	48.684	ENSCVAG00000009252	usb1	97	49.123	Cyprinodon_variegatus
ENSUAMG00000016823	USB1	89	48.954	ENSDARG00000003841	usb1	95	46.947	Danio_rerio
ENSUAMG00000016823	USB1	100	79.554	ENSDORG00000001888	Usb1	100	80.669	Dipodomys_ordii
ENSUAMG00000016823	USB1	77	39.720	FBgn0037713	CG16790	79	39.720	Drosophila_melanogaster
ENSUAMG00000016823	USB1	100	69.888	ENSETEG00000019682	USB1	100	69.145	Echinops_telfairi
ENSUAMG00000016823	USB1	83	51.351	ENSEBUG00000005889	usb1	78	51.351	Eptatretus_burgeri
ENSUAMG00000016823	USB1	100	86.617	ENSEASG00005005484	USB1	100	86.617	Equus_asinus_asinus
ENSUAMG00000016823	USB1	100	86.617	ENSECAG00000019493	USB1	91	86.617	Equus_caballus
ENSUAMG00000016823	USB1	65	77.841	ENSEEUG00000000154	USB1	100	59.851	Erinaceus_europaeus
ENSUAMG00000016823	USB1	84	50.000	ENSELUG00000010974	usb1	84	50.000	Esox_lucius
ENSUAMG00000016823	USB1	100	89.219	ENSFCAG00000002693	USB1	100	88.848	Felis_catus
ENSUAMG00000016823	USB1	100	61.710	ENSFALG00000006876	USB1	99	61.710	Ficedula_albicollis
ENSUAMG00000016823	USB1	100	82.900	ENSFDAG00000010052	USB1	100	82.156	Fukomys_damarensis
ENSUAMG00000016823	USB1	80	50.000	ENSFHEG00000012334	usb1	74	53.763	Fundulus_heteroclitus
ENSUAMG00000016823	USB1	83	52.018	ENSGMOG00000004228	usb1	99	52.018	Gadus_morhua
ENSUAMG00000016823	USB1	83	67.411	ENSGALG00000035604	USB1	100	62.963	Gallus_gallus
ENSUAMG00000016823	USB1	98	48.014	ENSGAFG00000021890	usb1	84	51.709	Gambusia_affinis
ENSUAMG00000016823	USB1	97	46.154	ENSGACG00000003257	usb1	99	47.464	Gasterosteus_aculeatus
ENSUAMG00000016823	USB1	100	62.637	ENSGAGG00000022572	USB1	100	61.905	Gopherus_agassizii
ENSUAMG00000016823	USB1	100	83.271	ENSGGOG00000017147	USB1	100	83.271	Gorilla_gorilla
ENSUAMG00000016823	USB1	84	54.626	ENSHBUG00000009823	usb1	99	50.179	Haplochromis_burtoni
ENSUAMG00000016823	USB1	100	82.156	ENSHGLG00000016078	USB1	98	81.413	Heterocephalus_glaber_female
ENSUAMG00000016823	USB1	100	82.156	ENSHGLG00100005562	USB1	98	81.413	Heterocephalus_glaber_male
ENSUAMG00000016823	USB1	81	54.378	ENSHCOG00000015633	usb1	99	49.814	Hippocampus_comes
ENSUAMG00000016823	USB1	98	47.569	ENSIPUG00000008601	usb1	78	54.464	Ictalurus_punctatus
ENSUAMG00000016823	USB1	100	85.714	ENSSTOG00000007548	USB1	100	85.348	Ictidomys_tridecemlineatus
ENSUAMG00000016823	USB1	100	84.387	ENSJJAG00000021859	Usb1	100	84.015	Jaculus_jaculus
ENSUAMG00000016823	USB1	84	52.863	ENSKMAG00000007200	usb1	80	52.863	Kryptolebias_marmoratus
ENSUAMG00000016823	USB1	74	53.266	ENSLBEG00000008452	usb1	64	53.927	Labrus_bergylta
ENSUAMG00000016823	USB1	88	54.839	ENSLACG00000000105	USB1	72	62.019	Latimeria_chalumnae
ENSUAMG00000016823	USB1	93	53.815	ENSLOCG00000000465	usb1	87	55.102	Lepisosteus_oculatus
ENSUAMG00000016823	USB1	100	65.185	ENSLAFG00000002267	USB1	100	65.556	Loxodonta_africana
ENSUAMG00000016823	USB1	100	84.758	ENSMFAG00000003926	USB1	100	84.387	Macaca_fascicularis
ENSUAMG00000016823	USB1	100	84.758	ENSMMUG00000022669	USB1	100	84.387	Macaca_mulatta
ENSUAMG00000016823	USB1	100	84.387	ENSMNEG00000042487	USB1	100	84.015	Macaca_nemestrina
ENSUAMG00000016823	USB1	100	84.758	ENSMLEG00000028756	USB1	100	84.387	Mandrillus_leucophaeus
ENSUAMG00000016823	USB1	98	49.640	ENSMAMG00000015092	usb1	99	48.375	Mastacembelus_armatus
ENSUAMG00000016823	USB1	83	54.464	ENSMZEG00005010008	usb1	99	50.179	Maylandia_zebra
ENSUAMG00000016823	USB1	100	81.041	ENSMAUG00000007832	Usb1	100	81.041	Mesocricetus_auratus
ENSUAMG00000016823	USB1	100	84.758	ENSMICG00000004900	USB1	100	84.758	Microcebus_murinus
ENSUAMG00000016823	USB1	100	81.784	ENSMOCG00000022647	Usb1	100	81.413	Microtus_ochrogaster
ENSUAMG00000016823	USB1	85	52.193	ENSMMOG00000000490	usb1	88	52.193	Mola_mola
ENSUAMG00000016823	USB1	100	64.103	ENSMODG00000014067	USB1	100	62.724	Monodelphis_domestica
ENSUAMG00000016823	USB1	94	49.802	ENSMALG00000005930	usb1	99	49.110	Monopterus_albus
ENSUAMG00000016823	USB1	100	79.182	MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	Mus_caroli
ENSUAMG00000016823	USB1	100	79.554	ENSMUSG00000031792	Usb1	100	80.531	Mus_musculus
ENSUAMG00000016823	USB1	100	80.669	MGP_PahariEiJ_G0023019	Usb1	100	82.906	Mus_pahari
ENSUAMG00000016823	USB1	100	78.810	MGP_SPRETEiJ_G0032540	Usb1	100	78.439	Mus_spretus
ENSUAMG00000016823	USB1	100	92.565	ENSMPUG00000004684	USB1	96	92.565	Mustela_putorius_furo
ENSUAMG00000016823	USB1	86	87.879	ENSMLUG00000007400	USB1	100	87.879	Myotis_lucifugus
ENSUAMG00000016823	USB1	100	83.643	ENSNGAG00000009703	Usb1	100	83.643	Nannospalax_galili
ENSUAMG00000016823	USB1	87	48.498	ENSNBRG00000008747	usb1	99	53.271	Neolamprologus_brichardi
ENSUAMG00000016823	USB1	94	83.071	ENSNLEG00000003340	USB1	100	83.071	Nomascus_leucogenys
ENSUAMG00000016823	USB1	57	58.974	ENSMEUG00000003328	-	100	62.179	Notamacropus_eugenii
ENSUAMG00000016823	USB1	62	84.848	ENSOPRG00000011803	USB1	72	84.848	Ochotona_princeps
ENSUAMG00000016823	USB1	100	79.926	ENSODEG00000016214	USB1	100	79.926	Octodon_degus
ENSUAMG00000016823	USB1	98	50.179	ENSONIG00000011063	usb1	81	54.185	Oreochromis_niloticus
ENSUAMG00000016823	USB1	87	70.513	ENSOANG00000012118	USB1	94	72.444	Ornithorhynchus_anatinus
ENSUAMG00000016823	USB1	93	47.390	ENSORLG00000012479	usb1	82	50.893	Oryzias_latipes
ENSUAMG00000016823	USB1	93	47.390	ENSORLG00020018671	usb1	82	50.893	Oryzias_latipes_hni
ENSUAMG00000016823	USB1	83	50.893	ENSORLG00015009679	usb1	99	45.725	Oryzias_latipes_hsok
ENSUAMG00000016823	USB1	83	51.786	ENSOMEG00000012930	usb1	99	47.636	Oryzias_melastigma
ENSUAMG00000016823	USB1	100	76.580	ENSOGAG00000003273	USB1	100	77.323	Otolemur_garnettii
ENSUAMG00000016823	USB1	92	84.211	ENSOARG00000001107	USB1	92	85.062	Ovis_aries
ENSUAMG00000016823	USB1	100	82.900	ENSPPAG00000042137	USB1	100	82.900	Pan_paniscus
ENSUAMG00000016823	USB1	100	88.476	ENSPPRG00000024797	USB1	100	88.104	Panthera_pardus
ENSUAMG00000016823	USB1	100	88.476	ENSPTIG00000007506	USB1	100	88.104	Panthera_tigris_altaica
ENSUAMG00000016823	USB1	100	76.208	ENSPTRG00000008172	USB1	100	86.916	Pan_troglodytes
ENSUAMG00000016823	USB1	100	84.758	ENSPANG00000025138	USB1	100	84.387	Papio_anubis
ENSUAMG00000016823	USB1	96	50.193	ENSPKIG00000015109	usb1	80	52.743	Paramormyrops_kingsleyae
ENSUAMG00000016823	USB1	83	53.778	ENSPSIG00000004305	USB1	100	53.778	Pelodiscus_sinensis
ENSUAMG00000016823	USB1	84	51.111	ENSPMGG00000017725	usb1	86	51.111	Periophthalmus_magnuspinnatus
ENSUAMG00000016823	USB1	100	80.882	ENSPEMG00000016183	Usb1	100	79.044	Peromyscus_maniculatus_bairdii
ENSUAMG00000016823	USB1	83	50.885	ENSPMAG00000000462	usb1	95	50.885	Petromyzon_marinus
ENSUAMG00000016823	USB1	98	48.399	ENSPFOG00000011130	usb1	84	52.137	Poecilia_formosa
ENSUAMG00000016823	USB1	98	47.687	ENSPLAG00000009820	usb1	82	52.193	Poecilia_latipinna
ENSUAMG00000016823	USB1	98	48.754	ENSPMEG00000006402	usb1	84	52.137	Poecilia_mexicana
ENSUAMG00000016823	USB1	86	48.560	ENSPREG00000001047	usb1	78	54.639	Poecilia_reticulata
ENSUAMG00000016823	USB1	95	79.688	ENSPPYG00000007401	USB1	100	79.688	Pongo_abelii
ENSUAMG00000016823	USB1	100	86.245	ENSPCOG00000022612	USB1	100	85.874	Propithecus_coquereli
ENSUAMG00000016823	USB1	100	81.041	ENSPVAG00000004613	USB1	100	79.926	Pteropus_vampyrus
ENSUAMG00000016823	USB1	98	50.538	ENSPNYG00000022262	usb1	99	50.538	Pundamilia_nyererei
ENSUAMG00000016823	USB1	89	51.046	ENSPNAG00000011736	usb1	81	51.046	Pygocentrus_nattereri
ENSUAMG00000016823	USB1	100	81.413	ENSRNOG00000013216	Usb1	100	81.041	Rattus_norvegicus
ENSUAMG00000016823	USB1	100	78.067	ENSRBIG00000044466	USB1	100	88.318	Rhinopithecus_bieti
ENSUAMG00000016823	USB1	100	84.387	ENSRROG00000029211	USB1	100	84.015	Rhinopithecus_roxellana
ENSUAMG00000016823	USB1	100	82.156	ENSSBOG00000029362	USB1	100	82.156	Saimiri_boliviensis_boliviensis
ENSUAMG00000016823	USB1	81	71.689	ENSSHAG00000006993	USB1	94	70.168	Sarcophilus_harrisii
ENSUAMG00000016823	USB1	93	54.365	ENSSFOG00015023663	usb1	71	57.709	Scleropages_formosus
ENSUAMG00000016823	USB1	96	47.292	ENSSMAG00000015834	usb1	99	46.939	Scophthalmus_maximus
ENSUAMG00000016823	USB1	84	55.310	ENSSDUG00000002949	usb1	99	50.362	Seriola_dumerili
ENSUAMG00000016823	USB1	99	48.689	ENSSLDG00000014174	usb1	80	55.357	Seriola_lalandi_dorsalis
ENSUAMG00000016823	USB1	80	65.888	ENSSPUG00000006741	USB1	100	65.888	Sphenodon_punctatus
ENSUAMG00000016823	USB1	98	47.719	ENSSPAG00000007484	usb1	82	51.931	Stegastes_partitus
ENSUAMG00000016823	USB1	100	85.502	ENSSSCG00000002807	USB1	100	85.502	Sus_scrofa
ENSUAMG00000016823	USB1	78	66.351	ENSTGUG00000004792	USB1	99	59.108	Taeniopygia_guttata
ENSUAMG00000016823	USB1	98	48.327	ENSTRUG00000021069	usb1	99	47.970	Takifugu_rubripes
ENSUAMG00000016823	USB1	98	48.106	ENSTNIG00000000626	usb1	98	46.970	Tetraodon_nigroviridis
ENSUAMG00000016823	USB1	86	57.328	ENSTBEG00000001507	USB1	100	57.328	Tupaia_belangeri
ENSUAMG00000016823	USB1	80	100.000	ENSUMAG00000021369	USB1	100	100.000	Ursus_maritimus
ENSUAMG00000016823	USB1	77	62.319	ENSVPAG00000009834	-	59	90.000	Vicugna_pacos
ENSUAMG00000016823	USB1	99	91.791	ENSVVUG00000023700	USB1	93	90.417	Vulpes_vulpes
ENSUAMG00000016823	USB1	81	56.422	ENSXETG00000013795	usb1	89	56.502	Xenopus_tropicalis
ENSUAMG00000016823	USB1	84	52.632	ENSXMAG00000024687	usb1	67	52.632	Xiphophorus_maculatus