EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000018288 (Gene tree)
Gene ID: -
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 12630 bases
Position: chrLZNR01001224.1:165004-177633
Accession: 17349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000023383	PRP4	PF08799.11	3.3e-14	1	1
ENSUAMP00000023379	PRP4	PF08799.11	3.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000026120	PRPF4-202	1050	-	ENSUAMP00000023383	349 (aa)	-	-
ENSUAMT00000026116	PRPF4-201	1110	-	ENSUAMP00000023379	369 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000018288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000018288's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000018288	PRPF4	90	96.707	ENSG00000136875	PRPF4	64	96.707	Homo_sapiens
ENSUAMG00000018288	PRPF4	88	74.516	ENSAPOG00000014132	prpf4	65	73.585	Acanthochromis_polyacanthus
ENSUAMG00000018288	PRPF4	90	97.006	ENSAMEG00000013048	PRPF4	63	97.006	Ailuropoda_melanoleuca
ENSUAMG00000018288	PRPF4	88	73.463	ENSACIG00000005579	prpf4	62	72.555	Amphilophus_citrinellus
ENSUAMG00000018288	PRPF4	94	67.989	ENSAOCG00000005457	prpf4	67	73.270	Amphiprion_ocellaris
ENSUAMG00000018288	PRPF4	88	73.548	ENSAPEG00000000776	prpf4	62	72.956	Amphiprion_percula
ENSUAMG00000018288	PRPF4	88	73.786	ENSATEG00000023013	prpf4	62	72.871	Anabas_testudineus
ENSUAMG00000018288	PRPF4	88	88.599	ENSAPLG00000006534	PRPF4	61	85.846	Anas_platyrhynchos
ENSUAMG00000018288	PRPF4	88	88.350	ENSACAG00000015110	PRPF4	64	85.119	Anolis_carolinensis
ENSUAMG00000018288	PRPF4	90	96.707	ENSANAG00000022464	PRPF4	62	96.707	Aotus_nancymaae
ENSUAMG00000018288	PRPF4	88	73.786	ENSACLG00000019031	prpf4	62	73.186	Astatotilapia_calliptera
ENSUAMG00000018288	PRPF4	88	77.199	ENSAMXG00000006756	prpf4	67	75.786	Astyanax_mexicanus
ENSUAMG00000018288	PRPF4	90	95.210	ENSBTAG00000004571	PRPF4	64	95.210	Bos_taurus
ENSUAMG00000018288	PRPF4	74	39.464	WBGene00007972	prp-4	53	39.464	Caenorhabditis_elegans
ENSUAMG00000018288	PRPF4	90	96.418	ENSCJAG00000017856	PRPF4	64	96.418	Callithrix_jacchus
ENSUAMG00000018288	PRPF4	90	96.407	ENSCAFG00000003224	PRPF4	62	96.407	Canis_familiaris
ENSUAMG00000018288	PRPF4	90	96.407	ENSCAFG00020022637	PRPF4	64	96.407	Canis_lupus_dingo
ENSUAMG00000018288	PRPF4	90	95.821	ENSCHIG00000024648	-	64	95.821	Capra_hircus
ENSUAMG00000018288	PRPF4	90	96.407	ENSTSYG00000010366	PRPF4	64	96.407	Carlito_syrichta
ENSUAMG00000018288	PRPF4	80	84.588	ENSCAPG00000008935	PRPF4	64	84.588	Cavia_aperea
ENSUAMG00000018288	PRPF4	90	90.719	ENSCPOG00000014729	-	65	90.719	Cavia_porcellus
ENSUAMG00000018288	PRPF4	90	96.707	ENSCPOG00000010747	-	64	96.707	Cavia_porcellus
ENSUAMG00000018288	PRPF4	90	96.407	ENSCCAG00000028990	PRPF4	64	96.407	Cebus_capucinus
ENSUAMG00000018288	PRPF4	90	96.108	ENSCATG00000021552	PRPF4	64	96.108	Cercocebus_atys
ENSUAMG00000018288	PRPF4	90	96.707	ENSCLAG00000013448	PRPF4	64	96.707	Chinchilla_lanigera
ENSUAMG00000018288	PRPF4	77	91.481	ENSCHOG00000007233	PRPF4	60	91.481	Choloepus_hoffmanni
ENSUAMG00000018288	PRPF4	88	89.902	ENSCPBG00000019136	PRPF4	50	86.890	Chrysemys_picta_bellii
ENSUAMG00000018288	PRPF4	91	48.986	ENSCING00000001299	-	65	47.953	Ciona_intestinalis
ENSUAMG00000018288	PRPF4	92	47.093	ENSCSAVG00000009178	-	69	46.307	Ciona_savignyi
ENSUAMG00000018288	PRPF4	90	96.407	ENSCANG00000003246	PRPF4	64	96.407	Colobus_angolensis_palliatus
ENSUAMG00000018288	PRPF4	90	96.407	ENSCGRG00001016992	Prpf4	67	96.407	Cricetulus_griseus_chok1gshd
ENSUAMG00000018288	PRPF4	90	96.407	ENSCGRG00000017560	Prpf4	67	96.407	Cricetulus_griseus_crigri
ENSUAMG00000018288	PRPF4	96	65.915	ENSCSEG00000020451	prpf4	70	65.915	Cynoglossus_semilaevis
ENSUAMG00000018288	PRPF4	96	69.859	ENSDARG00000067639	prpf4	70	69.859	Danio_rerio
ENSUAMG00000018288	PRPF4	90	96.119	ENSDNOG00000013203	PRPF4	64	96.119	Dasypus_novemcinctus
ENSUAMG00000018288	PRPF4	90	96.407	ENSDORG00000026275	Prpf4	64	96.407	Dipodomys_ordii
ENSUAMG00000018288	PRPF4	79	50.725	FBgn0036733	U4-U6-60K	65	42.818	Drosophila_melanogaster
ENSUAMG00000018288	PRPF4	90	94.643	ENSETEG00000020389	PRPF4	64	94.643	Echinops_telfairi
ENSUAMG00000018288	PRPF4	88	67.857	ENSEBUG00000015229	prpf4	62	68.167	Eptatretus_burgeri
ENSUAMG00000018288	PRPF4	90	96.707	ENSEASG00005022678	PRPF4	64	96.707	Equus_asinus_asinus
ENSUAMG00000018288	PRPF4	90	96.707	ENSECAG00000007072	PRPF4	64	96.707	Equus_caballus
ENSUAMG00000018288	PRPF4	70	90.517	ENSEEUG00000007480	PRPF4	57	90.517	Erinaceus_europaeus
ENSUAMG00000018288	PRPF4	96	70.704	ENSELUG00000007510	prpf4	70	70.704	Esox_lucius
ENSUAMG00000018288	PRPF4	90	96.418	ENSFCAG00000005514	PRPF4	64	96.418	Felis_catus
ENSUAMG00000018288	PRPF4	88	86.319	ENSFALG00000005423	PRPF4	66	80.409	Ficedula_albicollis
ENSUAMG00000018288	PRPF4	90	96.707	ENSFDAG00000005839	PRPF4	64	96.707	Fukomys_damarensis
ENSUAMG00000018288	PRPF4	88	72.168	ENSFHEG00000001300	prpf4	61	72.168	Fundulus_heteroclitus
ENSUAMG00000018288	PRPF4	88	88.274	ENSGALG00000008857	PRPF4	57	88.274	Gallus_gallus
ENSUAMG00000018288	PRPF4	88	72.492	ENSGAFG00000012164	prpf4	69	69.461	Gambusia_affinis
ENSUAMG00000018288	PRPF4	95	59.605	ENSGACG00000015476	prpf4	89	59.040	Gasterosteus_aculeatus
ENSUAMG00000018288	PRPF4	88	89.251	ENSGAGG00000025029	PRPF4	61	86.280	Gopherus_agassizii
ENSUAMG00000018288	PRPF4	90	96.707	ENSGGOG00000006943	PRPF4	64	96.707	Gorilla_gorilla
ENSUAMG00000018288	PRPF4	88	73.463	ENSHBUG00000000562	prpf4	66	72.871	Haplochromis_burtoni
ENSUAMG00000018288	PRPF4	90	96.707	ENSHGLG00000015191	PRPF4	66	96.707	Heterocephalus_glaber_female
ENSUAMG00000018288	PRPF4	90	79.641	ENSHGLG00000003838	-	63	79.641	Heterocephalus_glaber_female
ENSUAMG00000018288	PRPF4	87	83.934	ENSHGLG00000016628	-	67	82.143	Heterocephalus_glaber_female
ENSUAMG00000018288	PRPF4	90	79.641	ENSHGLG00100005571	-	63	79.641	Heterocephalus_glaber_male
ENSUAMG00000018288	PRPF4	96	69.014	ENSIPUG00000017956	PRPF4	70	69.014	Ictalurus_punctatus
ENSUAMG00000018288	PRPF4	90	96.108	ENSSTOG00000027833	PRPF4	67	96.108	Ictidomys_tridecemlineatus
ENSUAMG00000018288	PRPF4	90	96.407	ENSJJAG00000008838	Prpf4	66	96.407	Jaculus_jaculus
ENSUAMG00000018288	PRPF4	88	72.816	ENSKMAG00000013236	prpf4	69	66.761	Kryptolebias_marmoratus
ENSUAMG00000018288	PRPF4	88	72.638	ENSLBEG00000020611	prpf4	62	71.429	Labrus_bergylta
ENSUAMG00000018288	PRPF4	98	68.120	ENSLACG00000016317	PRPF4	63	72.892	Latimeria_chalumnae
ENSUAMG00000018288	PRPF4	96	72.394	ENSLOCG00000000581	prpf4	70	72.394	Lepisosteus_oculatus
ENSUAMG00000018288	PRPF4	90	95.522	ENSLAFG00000018225	PRPF4	64	95.522	Loxodonta_africana
ENSUAMG00000018288	PRPF4	90	96.108	ENSMFAG00000039397	PRPF4	64	96.108	Macaca_fascicularis
ENSUAMG00000018288	PRPF4	90	96.108	ENSMMUG00000005844	PRPF4	68	96.108	Macaca_mulatta
ENSUAMG00000018288	PRPF4	88	86.068	ENSMNEG00000033737	PRPF4	61	86.068	Macaca_nemestrina
ENSUAMG00000018288	PRPF4	90	96.108	ENSMLEG00000040284	PRPF4	64	96.108	Mandrillus_leucophaeus
ENSUAMG00000018288	PRPF4	96	67.227	ENSMAMG00000020141	prpf4	70	66.852	Mastacembelus_armatus
ENSUAMG00000018288	PRPF4	88	73.786	ENSMZEG00005023205	prpf4	62	73.186	Maylandia_zebra
ENSUAMG00000018288	PRPF4	87	87.582	ENSMGAG00000001796	PRPF4	62	82.883	Meleagris_gallopavo
ENSUAMG00000018288	PRPF4	90	95.509	ENSMAUG00000018022	Prpf4	64	95.509	Mesocricetus_auratus
ENSUAMG00000018288	PRPF4	90	95.509	ENSMICG00000015022	PRPF4	64	95.224	Microcebus_murinus
ENSUAMG00000018288	PRPF4	90	95.509	ENSMOCG00000018273	Prpf4	64	95.509	Microtus_ochrogaster
ENSUAMG00000018288	PRPF4	96	65.352	ENSMMOG00000021177	prpf4	70	64.986	Mola_mola
ENSUAMG00000018288	PRPF4	90	90.179	ENSMODG00000004444	-	64	90.179	Monodelphis_domestica
ENSUAMG00000018288	PRPF4	90	89.583	ENSMODG00000025096	-	62	89.583	Monodelphis_domestica
ENSUAMG00000018288	PRPF4	95	67.514	ENSMALG00000013624	prpf4	69	67.514	Monopterus_albus
ENSUAMG00000018288	PRPF4	90	96.108	MGP_CAROLIEiJ_G0026078	Prpf4	64	96.108	Mus_caroli
ENSUAMG00000018288	PRPF4	90	96.108	ENSMUSG00000066148	Prpf4	64	96.108	Mus_musculus
ENSUAMG00000018288	PRPF4	90	95.808	MGP_PahariEiJ_G0028413	Prpf4	64	95.808	Mus_pahari
ENSUAMG00000018288	PRPF4	90	96.108	MGP_SPRETEiJ_G0027042	Prpf4	64	96.108	Mus_spretus
ENSUAMG00000018288	PRPF4	90	97.006	ENSMPUG00000007883	PRPF4	64	97.006	Mustela_putorius_furo
ENSUAMG00000018288	PRPF4	90	94.311	ENSMLUG00000008626	-	62	94.311	Myotis_lucifugus
ENSUAMG00000018288	PRPF4	90	96.108	ENSMLUG00000015309	-	62	96.108	Myotis_lucifugus
ENSUAMG00000018288	PRPF4	91	88.506	ENSNGAG00000000468	Prpf4	77	85.674	Nannospalax_galili
ENSUAMG00000018288	PRPF4	88	73.786	ENSNBRG00000007972	prpf4	62	73.186	Neolamprologus_brichardi
ENSUAMG00000018288	PRPF4	90	96.707	ENSNLEG00000016647	PRPF4	64	96.707	Nomascus_leucogenys
ENSUAMG00000018288	PRPF4	90	89.028	ENSMEUG00000013256	PRPF4	64	89.602	Notamacropus_eugenii
ENSUAMG00000018288	PRPF4	90	95.522	ENSOPRG00000005302	PRPF4	64	95.522	Ochotona_princeps
ENSUAMG00000018288	PRPF4	90	96.707	ENSODEG00000018147	PRPF4	64	96.707	Octodon_degus
ENSUAMG00000018288	PRPF4	88	73.786	ENSONIG00000012671	prpf4	62	73.186	Oreochromis_niloticus
ENSUAMG00000018288	PRPF4	90	96.407	ENSOCUG00000005046	PRPF4	64	96.407	Oryctolagus_cuniculus
ENSUAMG00000018288	PRPF4	88	71.661	ENSORLG00000019641	prpf4	62	70.476	Oryzias_latipes
ENSUAMG00000018288	PRPF4	88	71.661	ENSORLG00020019438	prpf4	62	70.476	Oryzias_latipes_hni
ENSUAMG00000018288	PRPF4	88	71.987	ENSOMEG00000020941	prpf4	64	71.987	Oryzias_melastigma
ENSUAMG00000018288	PRPF4	91	90.237	ENSOGAG00000007802	PRPF4	63	90.237	Otolemur_garnettii
ENSUAMG00000018288	PRPF4	90	96.108	ENSOARG00000006319	PRPF4	62	96.108	Ovis_aries
ENSUAMG00000018288	PRPF4	90	96.707	ENSPPAG00000041797	PRPF4	64	96.707	Pan_paniscus
ENSUAMG00000018288	PRPF4	90	96.707	ENSPPRG00000014360	PRPF4	64	96.707	Panthera_pardus
ENSUAMG00000018288	PRPF4	90	96.707	ENSPTIG00000009574	PRPF4	64	96.707	Panthera_tigris_altaica
ENSUAMG00000018288	PRPF4	90	96.707	ENSPTRG00000021274	PRPF4	64	96.418	Pan_troglodytes
ENSUAMG00000018288	PRPF4	90	96.108	ENSPANG00000025776	PRPF4	62	96.108	Papio_anubis
ENSUAMG00000018288	PRPF4	96	70.141	ENSPKIG00000017259	prpf4	70	70.141	Paramormyrops_kingsleyae
ENSUAMG00000018288	PRPF4	88	89.251	ENSPSIG00000010713	PRPF4	59	84.431	Pelodiscus_sinensis
ENSUAMG00000018288	PRPF4	83	58.036	ENSPMGG00000000997	prpf4	65	58.036	Periophthalmus_magnuspinnatus
ENSUAMG00000018288	PRPF4	90	96.407	ENSPEMG00000024115	Prpf4	64	96.407	Peromyscus_maniculatus_bairdii
ENSUAMG00000018288	PRPF4	90	89.342	ENSPCIG00000003821	PRPF4	64	89.908	Phascolarctos_cinereus
ENSUAMG00000018288	PRPF4	88	72.168	ENSPFOG00000013524	prpf4	96	71.519	Poecilia_formosa
ENSUAMG00000018288	PRPF4	88	70.874	ENSPLAG00000011620	prpf4	94	70.253	Poecilia_latipinna
ENSUAMG00000018288	PRPF4	88	72.492	ENSPMEG00000006813	prpf4	93	71.835	Poecilia_mexicana
ENSUAMG00000018288	PRPF4	88	96.626	ENSPCAG00000002561	PRPF4	63	96.626	Procavia_capensis
ENSUAMG00000018288	PRPF4	90	96.407	ENSPCOG00000011975	PRPF4	64	96.407	Propithecus_coquereli
ENSUAMG00000018288	PRPF4	90	90.746	ENSPVAG00000004708	PRPF4	64	90.746	Pteropus_vampyrus
ENSUAMG00000018288	PRPF4	88	73.786	ENSPNYG00000008013	prpf4	62	73.186	Pundamilia_nyererei
ENSUAMG00000018288	PRPF4	96	70.986	ENSPNAG00000000697	prpf4	70	70.986	Pygocentrus_nattereri
ENSUAMG00000018288	PRPF4	90	96.108	ENSRNOG00000014777	Prpf4	64	96.108	Rattus_norvegicus
ENSUAMG00000018288	PRPF4	90	96.407	ENSRBIG00000040221	PRPF4	64	96.407	Rhinopithecus_bieti
ENSUAMG00000018288	PRPF4	90	96.407	ENSRROG00000040240	PRPF4	64	96.407	Rhinopithecus_roxellana
ENSUAMG00000018288	PRPF4	90	90.179	ENSSHAG00000017658	PRPF4	64	90.179	Sarcophilus_harrisii
ENSUAMG00000018288	PRPF4	90	76.656	ENSSFOG00015008963	prpf4	70	71.831	Scleropages_formosus
ENSUAMG00000018288	PRPF4	88	72.492	ENSSMAG00000008889	prpf4	61	72.492	Scophthalmus_maximus
ENSUAMG00000018288	PRPF4	95	66.384	ENSSDUG00000022083	prpf4	69	66.667	Seriola_dumerili
ENSUAMG00000018288	PRPF4	95	66.667	ENSSLDG00000008115	prpf4	69	66.949	Seriola_lalandi_dorsalis
ENSUAMG00000018288	PRPF4	88	88.925	ENSSPUG00000015582	PRPF4	64	85.329	Sphenodon_punctatus
ENSUAMG00000018288	PRPF4	94	60.795	ENSSPAG00000011286	prpf4	66	60.795	Stegastes_partitus
ENSUAMG00000018288	PRPF4	90	96.707	ENSSSCG00000024648	PRPF4	64	96.707	Sus_scrofa
ENSUAMG00000018288	PRPF4	88	85.668	ENSTGUG00000002623	PRPF4	63	85.668	Taeniopygia_guttata
ENSUAMG00000018288	PRPF4	96	66.292	ENSTRUG00000008853	prpf4	70	66.292	Takifugu_rubripes
ENSUAMG00000018288	PRPF4	96	66.197	ENSTNIG00000013250	prpf4	70	66.197	Tetraodon_nigroviridis
ENSUAMG00000018288	PRPF4	90	82.985	ENSTBEG00000000821	PRPF4	64	82.985	Tupaia_belangeri
ENSUAMG00000018288	PRPF4	77	95.185	ENSTTRG00000003246	PRPF4	60	95.185	Tursiops_truncatus
ENSUAMG00000018288	PRPF4	90	95.808	ENSUMAG00000019375	PRPF4	64	95.808	Ursus_maritimus
ENSUAMG00000018288	PRPF4	90	96.119	ENSVPAG00000005281	PRPF4	64	96.119	Vicugna_pacos
ENSUAMG00000018288	PRPF4	90	94.675	ENSVVUG00000002476	PRPF4	64	94.675	Vulpes_vulpes
ENSUAMG00000018288	PRPF4	64	64.000	ENSXCOG00000006101	prpf4	54	66.184	Xiphophorus_couchianus
ENSUAMG00000018288	PRPF4	94	66.382	ENSXMAG00000002750	prpf4	76	66.382	Xiphophorus_maculatus