EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000018506 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 28063 bases
Position: chrLZNR01004299.1:20919-48981
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000024336	SF3b1	PF08920.10	6.1e-48	1	1
ENSUAMP00000024325	SF3b1	PF08920.10	2.2e-47	1	1
ENSUAMP00000024334	SF3b1	PF08920.10	3e-47	1	1
ENSUAMP00000024266	SF3b1	PF08920.10	3.5e-47	1	1
ENSUAMP00000024333	SF3b1	PF08920.10	4.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000027178	SF3B1-203	3318	-	ENSUAMP00000024333	1105 (aa)	-	-
ENSUAMT00000027184	SF3B1-206	462	-	ENSUAMP00000024339	153 (aa)	-	-
ENSUAMT00000027181	SF3B1-205	2037	-	ENSUAMP00000024336	678 (aa)	-	-
ENSUAMT00000027170	SF3B1-202	3369	-	ENSUAMP00000024325	1122 (aa)	-	-
ENSUAMT00000027179	SF3B1-204	2991	-	ENSUAMP00000024334	996 (aa)	-	-
ENSUAMT00000027103	SF3B1-201	3288	-	ENSUAMP00000024266	1095 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000018506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000018506's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000018506	SF3B1	99	99.190	ENSG00000115524	SF3B1	94	97.788	Homo_sapiens
ENSUAMG00000018506	SF3B1	99	98.371	ENSAPOG00000011894	sf3b1	94	83.604	Acanthochromis_polyacanthus
ENSUAMG00000018506	SF3B1	99	99.190	ENSAMEG00000013809	SF3B1	94	95.595	Ailuropoda_melanoleuca
ENSUAMG00000018506	SF3B1	99	97.773	ENSACIG00000020910	sf3b1	91	82.488	Amphilophus_citrinellus
ENSUAMG00000018506	SF3B1	99	97.976	ENSAOCG00000004478	sf3b1	94	83.604	Amphiprion_ocellaris
ENSUAMG00000018506	SF3B1	99	97.976	ENSAPEG00000012937	sf3b1	94	83.604	Amphiprion_percula
ENSUAMG00000018506	SF3B1	99	97.963	ENSATEG00000020435	sf3b1	94	83.902	Anabas_testudineus
ENSUAMG00000018506	SF3B1	99	98.988	ENSAPLG00000003993	SF3B1	94	94.684	Anas_platyrhynchos
ENSUAMG00000018506	SF3B1	99	98.785	ENSACAG00000009612	SF3B1	94	93.522	Anolis_carolinensis
ENSUAMG00000018506	SF3B1	99	99.190	ENSANAG00000021577	SF3B1	94	95.847	Aotus_nancymaae
ENSUAMG00000018506	SF3B1	99	97.773	ENSACLG00000023470	sf3b1	94	81.789	Astatotilapia_calliptera
ENSUAMG00000018506	SF3B1	99	97.571	ENSAMXG00000002219	sf3b1	94	84.715	Astyanax_mexicanus
ENSUAMG00000018506	SF3B1	99	99.190	ENSBTAG00000008915	SF3B1	94	95.222	Bos_taurus
ENSUAMG00000018506	SF3B1	95	82.973	WBGene00011605	sftb-1	93	64.992	Caenorhabditis_elegans
ENSUAMG00000018506	SF3B1	99	99.190	ENSCJAG00000003902	SF3B1	94	95.688	Callithrix_jacchus
ENSUAMG00000018506	SF3B1	99	99.190	ENSCAFG00000010826	SF3B1	94	95.688	Canis_familiaris
ENSUAMG00000018506	SF3B1	99	99.190	ENSCAFG00020004750	SF3B1	94	95.688	Canis_lupus_dingo
ENSUAMG00000018506	SF3B1	99	99.190	ENSCHIG00000015226	SF3B1	94	95.492	Capra_hircus
ENSUAMG00000018506	SF3B1	99	98.988	ENSTSYG00000009214	SF3B1	94	95.688	Carlito_syrichta
ENSUAMG00000018506	SF3B1	99	99.190	ENSCAPG00000006547	SF3B1	94	95.688	Cavia_aperea
ENSUAMG00000018506	SF3B1	99	99.190	ENSCPOG00000009353	SF3B1	94	95.847	Cavia_porcellus
ENSUAMG00000018506	SF3B1	99	99.190	ENSCCAG00000020506	SF3B1	94	95.688	Cebus_capucinus
ENSUAMG00000018506	SF3B1	99	99.190	ENSCATG00000035735	SF3B1	94	95.688	Cercocebus_atys
ENSUAMG00000018506	SF3B1	99	99.190	ENSCLAG00000014767	SF3B1	94	95.530	Chinchilla_lanigera
ENSUAMG00000018506	SF3B1	99	99.190	ENSCSAG00000011505	SF3B1	94	95.688	Chlorocebus_sabaeus
ENSUAMG00000018506	SF3B1	75	98.214	ENSCHOG00000009860	SF3B1	60	98.182	Choloepus_hoffmanni
ENSUAMG00000018506	SF3B1	99	98.988	ENSCPBG00000021902	SF3B1	94	93.864	Chrysemys_picta_bellii
ENSUAMG00000018506	SF3B1	68	84.932	ENSCING00000002558	-	90	68.934	Ciona_intestinalis
ENSUAMG00000018506	SF3B1	95	92.562	ENSCSAVG00000002559	-	95	72.057	Ciona_savignyi
ENSUAMG00000018506	SF3B1	99	99.190	ENSCANG00000029415	SF3B1	94	95.847	Colobus_angolensis_palliatus
ENSUAMG00000018506	SF3B1	99	99.190	ENSCGRG00001016990	Sf3b1	94	95.688	Cricetulus_griseus_chok1gshd
ENSUAMG00000018506	SF3B1	99	99.190	ENSCGRG00000005301	Sf3b1	94	95.688	Cricetulus_griseus_crigri
ENSUAMG00000018506	SF3B1	99	97.976	ENSCSEG00000003860	sf3b1	99	97.976	Cynoglossus_semilaevis
ENSUAMG00000018506	SF3B1	96	98.919	ENSCVAG00000003680	sf3b1	93	83.442	Cyprinodon_variegatus
ENSUAMG00000018506	SF3B1	99	97.773	ENSDARG00000056138	sf3b1	94	83.766	Danio_rerio
ENSUAMG00000018506	SF3B1	99	99.190	ENSDNOG00000011754	SF3B1	94	95.530	Dasypus_novemcinctus
ENSUAMG00000018506	SF3B1	99	99.190	ENSDORG00000002399	Sf3b1	94	89.867	Dipodomys_ordii
ENSUAMG00000018506	SF3B1	96	93.784	FBgn0031266	Sf3b1	99	73.155	Drosophila_melanogaster
ENSUAMG00000018506	SF3B1	94	97.482	ENSETEG00000009188	SF3B1	93	95.017	Echinops_telfairi
ENSUAMG00000018506	SF3B1	97	97.297	ENSEBUG00000004325	sf3b1	94	77.743	Eptatretus_burgeri
ENSUAMG00000018506	SF3B1	99	99.190	ENSEASG00005020159	SF3B1	92	95.066	Equus_asinus_asinus
ENSUAMG00000018506	SF3B1	99	99.190	ENSECAG00000021657	SF3B1	92	95.066	Equus_caballus
ENSUAMG00000018506	SF3B1	88	100.000	ENSEEUG00000000836	SF3B1	72	100.000	Erinaceus_europaeus
ENSUAMG00000018506	SF3B1	99	97.773	ENSELUG00000005977	sf3b1	92	82.532	Esox_lucius
ENSUAMG00000018506	SF3B1	99	99.190	ENSFCAG00000005038	SF3B1	94	95.688	Felis_catus
ENSUAMG00000018506	SF3B1	99	99.190	ENSFALG00000004281	SF3B1	93	94.684	Ficedula_albicollis
ENSUAMG00000018506	SF3B1	99	99.190	ENSFDAG00000017510	SF3B1	94	95.688	Fukomys_damarensis
ENSUAMG00000018506	SF3B1	99	97.773	ENSFHEG00000014333	sf3b1	94	82.305	Fundulus_heteroclitus
ENSUAMG00000018506	SF3B1	99	97.368	ENSGMOG00000006773	sf3b1	94	84.013	Gadus_morhua
ENSUAMG00000018506	SF3B1	99	98.988	ENSGALG00000008038	SF3B1	94	94.196	Gallus_gallus
ENSUAMG00000018506	SF3B1	99	97.571	ENSGAFG00000000704	sf3b1	94	83.609	Gambusia_affinis
ENSUAMG00000018506	SF3B1	99	97.976	ENSGACG00000008839	sf3b1	94	83.633	Gasterosteus_aculeatus
ENSUAMG00000018506	SF3B1	99	98.988	ENSGAGG00000017478	SF3B1	94	93.148	Gopherus_agassizii
ENSUAMG00000018506	SF3B1	99	99.190	ENSGGOG00000009264	SF3B1	84	99.190	Gorilla_gorilla
ENSUAMG00000018506	SF3B1	99	97.967	ENSHBUG00000007705	sf3b1	94	81.789	Haplochromis_burtoni
ENSUAMG00000018506	SF3B1	99	99.190	ENSHGLG00000008285	-	94	95.530	Heterocephalus_glaber_female
ENSUAMG00000018506	SF3B1	97	98.919	ENSHGLG00100005535	-	86	94.926	Heterocephalus_glaber_male
ENSUAMG00000018506	SF3B1	99	98.178	ENSHCOG00000016775	sf3b1	94	82.022	Hippocampus_comes
ENSUAMG00000018506	SF3B1	99	97.773	ENSIPUG00000013171	sf3b1	94	84.553	Ictalurus_punctatus
ENSUAMG00000018506	SF3B1	99	99.190	ENSSTOG00000011034	SF3B1	94	95.688	Ictidomys_tridecemlineatus
ENSUAMG00000018506	SF3B1	99	98.988	ENSJJAG00000010903	Sf3b1	94	95.652	Jaculus_jaculus
ENSUAMG00000018506	SF3B1	99	97.773	ENSKMAG00000004009	sf3b1	94	82.553	Kryptolebias_marmoratus
ENSUAMG00000018506	SF3B1	99	97.571	ENSLBEG00000022208	sf3b1	94	83.580	Labrus_bergylta
ENSUAMG00000018506	SF3B1	98	96.888	ENSLACG00000014832	SF3B1	94	86.808	Latimeria_chalumnae
ENSUAMG00000018506	SF3B1	99	98.381	ENSLOCG00000003899	sf3b1	94	84.109	Lepisosteus_oculatus
ENSUAMG00000018506	SF3B1	99	99.190	ENSLAFG00000001956	SF3B1	94	95.688	Loxodonta_africana
ENSUAMG00000018506	SF3B1	99	99.190	ENSMMUG00000022430	SF3B1	94	95.058	Macaca_mulatta
ENSUAMG00000018506	SF3B1	99	99.190	ENSMNEG00000042333	SF3B1	94	95.826	Macaca_nemestrina
ENSUAMG00000018506	SF3B1	93	99.190	ENSMLEG00000026141	SF3B1	81	99.190	Mandrillus_leucophaeus
ENSUAMG00000018506	SF3B1	99	97.571	ENSMAMG00000010241	sf3b1	84	97.571	Mastacembelus_armatus
ENSUAMG00000018506	SF3B1	99	97.773	ENSMZEG00005021254	sf3b1	94	81.789	Maylandia_zebra
ENSUAMG00000018506	SF3B1	99	98.988	ENSMGAG00000007017	SF3B1	94	93.023	Meleagris_gallopavo
ENSUAMG00000018506	SF3B1	99	95.530	ENSMAUG00000009071	Sf3b1	94	95.230	Mesocricetus_auratus
ENSUAMG00000018506	SF3B1	99	99.190	ENSMICG00000013879	SF3B1	94	95.652	Microcebus_murinus
ENSUAMG00000018506	SF3B1	99	99.190	ENSMOCG00000000455	Sf3b1	99	81.348	Microtus_ochrogaster
ENSUAMG00000018506	SF3B1	87	98.566	ENSMMOG00000000475	sf3b1	92	83.908	Mola_mola
ENSUAMG00000018506	SF3B1	99	98.988	ENSMODG00000012275	SF3B1	94	94.362	Monodelphis_domestica
ENSUAMG00000018506	SF3B1	99	97.571	ENSMALG00000017211	sf3b1	94	83.740	Monopterus_albus
ENSUAMG00000018506	SF3B1	99	99.190	MGP_CAROLIEiJ_G0014141	Sf3b1	94	95.688	Mus_caroli
ENSUAMG00000018506	SF3B1	99	99.190	ENSMUSG00000025982	Sf3b1	94	95.688	Mus_musculus
ENSUAMG00000018506	SF3B1	99	99.190	MGP_SPRETEiJ_G0014947	Sf3b1	94	95.688	Mus_spretus
ENSUAMG00000018506	SF3B1	99	99.190	ENSMPUG00000007799	SF3B1	94	95.688	Mustela_putorius_furo
ENSUAMG00000018506	SF3B1	99	96.154	ENSMLUG00000000840	SF3B1	94	95.522	Myotis_lucifugus
ENSUAMG00000018506	SF3B1	99	99.190	ENSNGAG00000021884	-	94	95.688	Nannospalax_galili
ENSUAMG00000018506	SF3B1	99	97.773	ENSNBRG00000015816	sf3b1	94	80.251	Neolamprologus_brichardi
ENSUAMG00000018506	SF3B1	99	99.190	ENSNLEG00000006861	SF3B1	94	95.688	Nomascus_leucogenys
ENSUAMG00000018506	SF3B1	97	94.926	ENSOPRG00000008596	SF3B1	83	94.926	Ochotona_princeps
ENSUAMG00000018506	SF3B1	99	99.190	ENSODEG00000011153	-	94	95.688	Octodon_degus
ENSUAMG00000018506	SF3B1	99	97.773	ENSONIG00000013758	sf3b1	94	81.789	Oreochromis_niloticus
ENSUAMG00000018506	SF3B1	57	57.072	ENSOANG00000014272	-	100	57.320	Ornithorhynchus_anatinus
ENSUAMG00000018506	SF3B1	80	99.190	ENSOCUG00000012722	-	89	90.816	Oryctolagus_cuniculus
ENSUAMG00000018506	SF3B1	99	97.571	ENSORLG00000020219	sf3b1	94	83.415	Oryzias_latipes
ENSUAMG00000018506	SF3B1	99	97.571	ENSORLG00020001746	sf3b1	94	83.415	Oryzias_latipes_hni
ENSUAMG00000018506	SF3B1	93	77.712	ENSORLG00015001759	sf3b1	79	77.712	Oryzias_latipes_hsok
ENSUAMG00000018506	SF3B1	99	97.571	ENSOMEG00000019231	sf3b1	84	97.571	Oryzias_melastigma
ENSUAMG00000018506	SF3B1	88	76.683	ENSOGAG00000000267	-	96	77.632	Otolemur_garnettii
ENSUAMG00000018506	SF3B1	99	99.190	ENSOARG00000015374	SF3B1	94	95.222	Ovis_aries
ENSUAMG00000018506	SF3B1	99	99.190	ENSPPAG00000035007	SF3B1	94	95.847	Pan_paniscus
ENSUAMG00000018506	SF3B1	99	99.190	ENSPPRG00000009090	SF3B1	94	95.688	Panthera_pardus
ENSUAMG00000018506	SF3B1	99	99.190	ENSPTIG00000021557	SF3B1	94	95.688	Panthera_tigris_altaica
ENSUAMG00000018506	SF3B1	99	99.190	ENSPTRG00000012771	SF3B1	84	99.190	Pan_troglodytes
ENSUAMG00000018506	SF3B1	99	99.190	ENSPANG00000013417	SF3B1	94	95.688	Papio_anubis
ENSUAMG00000018506	SF3B1	99	97.571	ENSPKIG00000000784	sf3b1	94	86.623	Paramormyrops_kingsleyae
ENSUAMG00000018506	SF3B1	99	98.988	ENSPSIG00000017222	SF3B1	93	91.211	Pelodiscus_sinensis
ENSUAMG00000018506	SF3B1	96	98.649	ENSPMGG00000004330	sf3b1	92	84.262	Periophthalmus_magnuspinnatus
ENSUAMG00000018506	SF3B1	99	99.190	ENSPEMG00000010699	Sf3b1	94	95.847	Peromyscus_maniculatus_bairdii
ENSUAMG00000018506	SF3B1	99	95.142	ENSPMAG00000001311	sf3b1	94	80.000	Petromyzon_marinus
ENSUAMG00000018506	SF3B1	99	98.988	ENSPCIG00000010642	SF3B1	94	94.196	Phascolarctos_cinereus
ENSUAMG00000018506	SF3B1	99	97.368	ENSPFOG00000000073	sf3b1	94	83.468	Poecilia_formosa
ENSUAMG00000018506	SF3B1	99	97.368	ENSPLAG00000002293	sf3b1	94	83.604	Poecilia_latipinna
ENSUAMG00000018506	SF3B1	99	97.368	ENSPMEG00000000446	sf3b1	92	83.604	Poecilia_mexicana
ENSUAMG00000018506	SF3B1	99	97.571	ENSPREG00000019652	sf3b1	84	97.571	Poecilia_reticulata
ENSUAMG00000018506	SF3B1	98	99.190	ENSPPYG00000013044	SF3B1	90	90.594	Pongo_abelii
ENSUAMG00000018506	SF3B1	99	98.785	ENSPCAG00000009292	SF3B1	94	95.688	Procavia_capensis
ENSUAMG00000018506	SF3B1	99	99.190	ENSPCOG00000024074	SF3B1	94	95.522	Propithecus_coquereli
ENSUAMG00000018506	SF3B1	99	99.190	ENSPVAG00000008302	SF3B1	94	95.688	Pteropus_vampyrus
ENSUAMG00000018506	SF3B1	99	97.773	ENSPNYG00000014939	sf3b1	94	81.789	Pundamilia_nyererei
ENSUAMG00000018506	SF3B1	99	97.773	ENSPNAG00000008288	sf3b1	94	84.553	Pygocentrus_nattereri
ENSUAMG00000018506	SF3B1	99	99.190	ENSRNOG00000013516	Sf3b1	94	95.688	Rattus_norvegicus
ENSUAMG00000018506	SF3B1	97	100.000	ENSRBIG00000026096	SF3B1	84	100.000	Rhinopithecus_bieti
ENSUAMG00000018506	SF3B1	99	99.190	ENSRROG00000031308	SF3B1	94	95.695	Rhinopithecus_roxellana
ENSUAMG00000018506	SF3B1	99	99.190	ENSSBOG00000020080	SF3B1	94	95.688	Saimiri_boliviensis_boliviensis
ENSUAMG00000018506	SF3B1	99	98.988	ENSSHAG00000017564	SF3B1	94	94.362	Sarcophilus_harrisii
ENSUAMG00000018506	SF3B1	99	97.773	ENSSFOG00015021535	sf3b1	94	86.733	Scleropages_formosus
ENSUAMG00000018506	SF3B1	99	97.760	ENSSMAG00000013977	sf3b1	93	82.154	Scophthalmus_maximus
ENSUAMG00000018506	SF3B1	99	97.571	ENSSDUG00000017422	sf3b1	94	83.415	Seriola_dumerili
ENSUAMG00000018506	SF3B1	99	97.571	ENSSLDG00000019495	sf3b1	94	83.252	Seriola_lalandi_dorsalis
ENSUAMG00000018506	SF3B1	85	100.000	ENSSARG00000007016	SF3B1	70	100.000	Sorex_araneus
ENSUAMG00000018506	SF3B1	99	98.785	ENSSPUG00000000410	SF3B1	94	93.864	Sphenodon_punctatus
ENSUAMG00000018506	SF3B1	99	97.976	ENSSPAG00000010451	sf3b1	95	97.976	Stegastes_partitus
ENSUAMG00000018506	SF3B1	96	98.919	ENSSSCG00000016075	SF3B1	93	95.688	Sus_scrofa
ENSUAMG00000018506	SF3B1	99	98.988	ENSTGUG00000010553	SF3B1	94	94.030	Taeniopygia_guttata
ENSUAMG00000018506	SF3B1	99	97.773	ENSTRUG00000015534	sf3b1	94	83.252	Takifugu_rubripes
ENSUAMG00000018506	SF3B1	88	100.000	ENSTBEG00000008714	SF3B1	86	100.000	Tupaia_belangeri
ENSUAMG00000018506	SF3B1	94	94.949	ENSTTRG00000003414	SF3B1	86	94.949	Tursiops_truncatus
ENSUAMG00000018506	SF3B1	99	99.190	ENSUMAG00000020945	SF3B1	94	95.688	Ursus_maritimus
ENSUAMG00000018506	SF3B1	99	99.190	ENSVPAG00000005798	SF3B1	84	99.190	Vicugna_pacos
ENSUAMG00000018506	SF3B1	99	99.190	ENSVVUG00000025948	SF3B1	89	95.688	Vulpes_vulpes
ENSUAMG00000018506	SF3B1	99	98.988	ENSXETG00000013339	sf3b1	99	81.191	Xenopus_tropicalis
ENSUAMG00000018506	SF3B1	99	97.571	ENSXCOG00000018086	sf3b1	84	97.571	Xiphophorus_couchianus
ENSUAMG00000018506	SF3B1	99	97.571	ENSXMAG00000007369	sf3b1	94	83.442	Xiphophorus_maculatus