EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000019525 (Gene tree)
Gene ID: -
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 45375 bases
Position: chrLZNR01001545.1:277467-322841
Accession: 29434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000025070	zf-CCCH	PF00642.24	0.00022	1	1
ENSUAMP00000025065	zf-CCCH	PF00642.24	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000027998	RC3H1-201	3378	-	ENSUAMP00000025065	1125 (aa)	-	-
ENSUAMT00000028003	RC3H1-202	3273	-	ENSUAMP00000025070	1090 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000019525's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000019525's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000019525	RC3H1	92	54.705	ENSUAMG00000015355	RC3H2	87	54.370

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000019525	RC3H1	100	96.293	ENSG00000135870	RC3H1	100	96.293	Homo_sapiens
ENSUAMG00000019525	RC3H1	100	98.675	ENSAMEG00000015657	RC3H1	100	98.675	Ailuropoda_melanoleuca
ENSUAMG00000019525	RC3H1	100	87.609	ENSAPLG00000005341	RC3H1	100	87.074	Anas_platyrhynchos
ENSUAMG00000019525	RC3H1	100	84.891	ENSACAG00000015271	RC3H1	100	84.777	Anolis_carolinensis
ENSUAMG00000019525	RC3H1	100	96.558	ENSANAG00000036716	RC3H1	100	96.558	Aotus_nancymaae
ENSUAMG00000019525	RC3H1	100	94.881	ENSBTAG00000052708	RC3H1	100	94.881	Bos_taurus
ENSUAMG00000019525	RC3H1	100	96.381	ENSCJAG00000009106	RC3H1	100	96.381	Callithrix_jacchus
ENSUAMG00000019525	RC3H1	100	97.703	ENSCAFG00000014434	RC3H1	100	97.703	Canis_familiaris
ENSUAMG00000019525	RC3H1	100	97.617	ENSCAFG00020017112	RC3H1	100	97.617	Canis_lupus_dingo
ENSUAMG00000019525	RC3H1	100	95.318	ENSCHIG00000002873	RC3H1	100	95.318	Capra_hircus
ENSUAMG00000019525	RC3H1	99	94.611	ENSTSYG00000003913	RC3H1	99	94.611	Carlito_syrichta
ENSUAMG00000019525	RC3H1	100	90.644	ENSCPOG00000004349	RC3H1	100	90.644	Cavia_porcellus
ENSUAMG00000019525	RC3H1	100	94.175	ENSCCAG00000025652	RC3H1	98	96.364	Cebus_capucinus
ENSUAMG00000019525	RC3H1	100	96.470	ENSCATG00000033497	RC3H1	100	96.470	Cercocebus_atys
ENSUAMG00000019525	RC3H1	100	93.998	ENSCLAG00000011267	RC3H1	100	93.998	Chinchilla_lanigera
ENSUAMG00000019525	RC3H1	96	96.501	ENSCSAG00000011823	RC3H1	85	96.501	Chlorocebus_sabaeus
ENSUAMG00000019525	RC3H1	96	96.304	ENSCPBG00000014670	RC3H1	100	88.519	Chrysemys_picta_bellii
ENSUAMG00000019525	RC3H1	100	96.473	ENSCANG00000032120	RC3H1	100	96.473	Colobus_angolensis_palliatus
ENSUAMG00000019525	RC3H1	100	93.993	ENSCGRG00001020812	Rc3h1	100	93.993	Cricetulus_griseus_chok1gshd
ENSUAMG00000019525	RC3H1	100	93.993	ENSCGRG00000011952	Rc3h1	100	93.993	Cricetulus_griseus_crigri
ENSUAMG00000019525	RC3H1	55	93.248	ENSDNOG00000011494	RC3H1	99	93.248	Dasypus_novemcinctus
ENSUAMG00000019525	RC3H1	100	94.700	ENSDORG00000004855	Rc3h1	100	94.700	Dipodomys_ordii
ENSUAMG00000019525	RC3H1	81	94.850	ENSETEG00000012064	RC3H1	87	94.850	Echinops_telfairi
ENSUAMG00000019525	RC3H1	100	95.053	ENSEASG00005017000	RC3H1	100	95.053	Equus_asinus_asinus
ENSUAMG00000019525	RC3H1	100	94.876	ENSECAG00000021208	RC3H1	100	94.876	Equus_caballus
ENSUAMG00000019525	RC3H1	83	93.162	ENSEEUG00000014861	RC3H1	93	83.302	Erinaceus_europaeus
ENSUAMG00000019525	RC3H1	100	97.087	ENSFCAG00000014924	RC3H1	100	97.087	Felis_catus
ENSUAMG00000019525	RC3H1	100	86.626	ENSFALG00000002947	RC3H1	100	86.002	Ficedula_albicollis
ENSUAMG00000019525	RC3H1	100	94.175	ENSFDAG00000013303	RC3H1	100	94.175	Fukomys_damarensis
ENSUAMG00000019525	RC3H1	100	86.754	ENSGALG00000004587	RC3H1	100	86.216	Gallus_gallus
ENSUAMG00000019525	RC3H1	100	87.182	ENSGAGG00000018194	RC3H1	100	87.094	Gopherus_agassizii
ENSUAMG00000019525	RC3H1	100	89.534	ENSGGOG00000005735	RC3H1	100	89.534	Gorilla_gorilla
ENSUAMG00000019525	RC3H1	88	87.821	ENSHGLG00000004183	-	100	87.821	Heterocephalus_glaber_female
ENSUAMG00000019525	RC3H1	100	93.469	ENSHGLG00100008577	RC3H1	100	93.469	Heterocephalus_glaber_male
ENSUAMG00000019525	RC3H1	100	94.969	ENSSTOG00000016033	RC3H1	100	95.410	Ictidomys_tridecemlineatus
ENSUAMG00000019525	RC3H1	100	94.258	ENSJJAG00000018915	Rc3h1	100	94.435	Jaculus_jaculus
ENSUAMG00000019525	RC3H1	100	75.416	ENSLACG00000016186	RC3H1	100	78.376	Latimeria_chalumnae
ENSUAMG00000019525	RC3H1	97	96.445	ENSLAFG00000004367	RC3H1	100	96.445	Loxodonta_africana
ENSUAMG00000019525	RC3H1	100	96.381	ENSMFAG00000033725	RC3H1	100	96.381	Macaca_fascicularis
ENSUAMG00000019525	RC3H1	100	96.293	ENSMMUG00000000630	RC3H1	100	96.293	Macaca_mulatta
ENSUAMG00000019525	RC3H1	100	96.470	ENSMNEG00000035968	RC3H1	100	96.470	Macaca_nemestrina
ENSUAMG00000019525	RC3H1	100	96.381	ENSMLEG00000037455	RC3H1	100	96.381	Mandrillus_leucophaeus
ENSUAMG00000019525	RC3H1	97	93.851	ENSMAUG00000020864	Rc3h1	93	93.851	Mesocricetus_auratus
ENSUAMG00000019525	RC3H1	100	96.025	ENSMICG00000003000	RC3H1	100	96.025	Microcebus_murinus
ENSUAMG00000019525	RC3H1	93	92.701	ENSMOCG00000016587	Rc3h1	98	92.701	Microtus_ochrogaster
ENSUAMG00000019525	RC3H1	100	91.623	ENSMODG00000004289	RC3H1	100	91.711	Monodelphis_domestica
ENSUAMG00000019525	RC3H1	100	93.286	MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.286	Mus_caroli
ENSUAMG00000019525	RC3H1	100	93.198	ENSMUSG00000040423	Rc3h1	100	93.198	Mus_musculus
ENSUAMG00000019525	RC3H1	100	93.021	MGP_PahariEiJ_G0027992	Rc3h1	100	93.021	Mus_pahari
ENSUAMG00000019525	RC3H1	100	93.021	MGP_SPRETEiJ_G0015563	Rc3h1	100	93.021	Mus_spretus
ENSUAMG00000019525	RC3H1	100	97.529	ENSMPUG00000004747	RC3H1	100	97.529	Mustela_putorius_furo
ENSUAMG00000019525	RC3H1	100	95.115	ENSMLUG00000011127	RC3H1	100	95.115	Myotis_lucifugus
ENSUAMG00000019525	RC3H1	100	95.230	ENSNGAG00000011135	Rc3h1	100	95.230	Nannospalax_galili
ENSUAMG00000019525	RC3H1	100	96.205	ENSNLEG00000015327	RC3H1	100	96.205	Nomascus_leucogenys
ENSUAMG00000019525	RC3H1	99	81.947	ENSOPRG00000013068	RC3H1	99	81.947	Ochotona_princeps
ENSUAMG00000019525	RC3H1	100	93.469	ENSODEG00000014185	RC3H1	100	93.469	Octodon_degus
ENSUAMG00000019525	RC3H1	100	89.956	ENSOANG00000000924	RC3H1	100	90.655	Ornithorhynchus_anatinus
ENSUAMG00000019525	RC3H1	99	95.341	ENSOCUG00000004930	RC3H1	98	95.341	Oryctolagus_cuniculus
ENSUAMG00000019525	RC3H1	100	88.889	ENSOGAG00000004044	RC3H1	100	88.889	Otolemur_garnettii
ENSUAMG00000019525	RC3H1	100	95.439	ENSOARG00000013011	RC3H1	100	95.439	Ovis_aries
ENSUAMG00000019525	RC3H1	100	96.296	ENSPPAG00000039253	RC3H1	100	96.296	Pan_paniscus
ENSUAMG00000019525	RC3H1	100	96.555	ENSPPRG00000009007	RC3H1	100	96.555	Panthera_pardus
ENSUAMG00000019525	RC3H1	100	96.922	ENSPTIG00000015326	RC3H1	100	96.922	Panthera_tigris_altaica
ENSUAMG00000019525	RC3H1	100	96.296	ENSPTRG00000001702	RC3H1	100	96.296	Pan_troglodytes
ENSUAMG00000019525	RC3H1	100	96.381	ENSPANG00000008886	RC3H1	100	96.381	Papio_anubis
ENSUAMG00000019525	RC3H1	100	88.246	ENSPSIG00000016181	RC3H1	100	88.421	Pelodiscus_sinensis
ENSUAMG00000019525	RC3H1	100	93.551	ENSPEMG00000011966	Rc3h1	100	93.463	Peromyscus_maniculatus_bairdii
ENSUAMG00000019525	RC3H1	70	93.418	ENSPCIG00000002058	RC3H1	95	98.430	Phascolarctos_cinereus
ENSUAMG00000019525	RC3H1	100	92.939	ENSPPYG00000000490	RC3H1	98	95.502	Pongo_abelii
ENSUAMG00000019525	RC3H1	80	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSUAMG00000019525	RC3H1	82	95.401	ENSPCOG00000021795	RC3H1	96	95.401	Propithecus_coquereli
ENSUAMG00000019525	RC3H1	100	87.633	ENSPVAG00000007593	RC3H1	100	87.633	Pteropus_vampyrus
ENSUAMG00000019525	RC3H1	97	62.090	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSUAMG00000019525	RC3H1	100	96.384	ENSRBIG00000037743	RC3H1	100	96.384	Rhinopithecus_bieti
ENSUAMG00000019525	RC3H1	100	96.470	ENSRROG00000036546	RC3H1	100	96.470	Rhinopithecus_roxellana
ENSUAMG00000019525	RC3H1	93	87.109	ENSSBOG00000010664	RC3H1	100	90.152	Saimiri_boliviensis_boliviensis
ENSUAMG00000019525	RC3H1	100	90.661	ENSSHAG00000007589	RC3H1	100	90.749	Sarcophilus_harrisii
ENSUAMG00000019525	RC3H1	87	86.712	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
ENSUAMG00000019525	RC3H1	100	85.882	ENSSPUG00000018472	RC3H1	100	86.051	Sphenodon_punctatus
ENSUAMG00000019525	RC3H1	100	96.378	ENSSSCG00000015498	RC3H1	100	96.378	Sus_scrofa
ENSUAMG00000019525	RC3H1	100	87.182	ENSTGUG00000004090	RC3H1	100	86.467	Taeniopygia_guttata
ENSUAMG00000019525	RC3H1	88	95.122	ENSTBEG00000005015	RC3H1	89	95.122	Tupaia_belangeri
ENSUAMG00000019525	RC3H1	100	95.507	ENSTTRG00000008572	RC3H1	100	95.507	Tursiops_truncatus
ENSUAMG00000019525	RC3H1	100	99.294	ENSUMAG00000020087	RC3H1	100	99.294	Ursus_maritimus
ENSUAMG00000019525	RC3H1	92	98.649	ENSVPAG00000002591	RC3H1	91	98.649	Vicugna_pacos
ENSUAMG00000019525	RC3H1	100	97.359	ENSVVUG00000014201	RC3H1	100	97.359	Vulpes_vulpes
ENSUAMG00000019525	RC3H1	100	77.845	ENSXETG00000020030	rc3h1	100	77.672	Xenopus_tropicalis