EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000019780 (Gene tree)
Gene ID: -
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 14662 bases
Position: chrLZNR01001784.1:212210-226871
Accession: 15818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000025394	RRM_1	PF00076.22	2.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000028353	RBM38-201	776	-	ENSUAMP00000025394	239 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000019780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000019780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000019780	RBM38	51	35.938	ENSUAMG00000018608	-	85	37.302
ENSUAMG00000019780	RBM38	54	31.298	ENSUAMG00000015514	MSI1	68	43.478

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000019780	RBM38	100	97.071	ENSG00000132819	RBM38	100	98.347	Homo_sapiens
ENSUAMG00000019780	RBM38	90	58.650	ENSAPOG00000003301	rbm38	91	59.052	Acanthochromis_polyacanthus
ENSUAMG00000019780	RBM38	91	67.713	ENSAPOG00000009939	-	94	68.468	Acanthochromis_polyacanthus
ENSUAMG00000019780	RBM38	89	70.320	ENSACIG00000012502	-	100	88.034	Amphilophus_citrinellus
ENSUAMG00000019780	RBM38	89	57.082	ENSACIG00000000010	rbm38	74	63.298	Amphilophus_citrinellus
ENSUAMG00000019780	RBM38	99	63.934	ENSAOCG00000012559	RBM38	99	64.754	Amphiprion_ocellaris
ENSUAMG00000019780	RBM38	90	58.650	ENSAOCG00000013497	-	91	59.052	Amphiprion_ocellaris
ENSUAMG00000019780	RBM38	99	59.836	ENSAPEG00000013137	rbm38	99	59.836	Amphiprion_percula
ENSUAMG00000019780	RBM38	91	64.167	ENSAPEG00000023581	-	95	65.546	Amphiprion_percula
ENSUAMG00000019780	RBM38	89	65.948	ENSATEG00000016710	-	92	66.810	Anabas_testudineus
ENSUAMG00000019780	RBM38	90	60.714	ENSATEG00000016366	rbm38	94	60.714	Anabas_testudineus
ENSUAMG00000019780	RBM38	91	77.727	ENSACAG00000016238	RBM38	97	73.729	Anolis_carolinensis
ENSUAMG00000019780	RBM38	90	95.833	ENSANAG00000031959	RBM38	100	99.174	Aotus_nancymaae
ENSUAMG00000019780	RBM38	89	67.672	ENSACLG00000019514	-	92	67.672	Astatotilapia_calliptera
ENSUAMG00000019780	RBM38	91	67.826	ENSAMXG00000015601	-	95	68.696	Astyanax_mexicanus
ENSUAMG00000019780	RBM38	77	64.324	ENSAMXG00000038120	rbm38	76	64.865	Astyanax_mexicanus
ENSUAMG00000019780	RBM38	100	95.816	ENSBTAG00000008105	RBM38	100	95.816	Bos_taurus
ENSUAMG00000019780	RBM38	58	60.870	WBGene00006321	sup-12	59	84.270	Caenorhabditis_elegans
ENSUAMG00000019780	RBM38	100	96.234	ENSCJAG00000019139	RBM38	100	99.174	Callithrix_jacchus
ENSUAMG00000019780	RBM38	100	97.908	ENSCAFG00020021943	RBM38	100	97.908	Canis_lupus_dingo
ENSUAMG00000019780	RBM38	100	94.979	ENSCHIG00000002609	RBM38	100	94.979	Capra_hircus
ENSUAMG00000019780	RBM38	100	96.653	ENSCPOG00000012781	RBM38	100	96.653	Cavia_porcellus
ENSUAMG00000019780	RBM38	100	96.234	ENSCCAG00000036872	RBM38	100	99.174	Cebus_capucinus
ENSUAMG00000019780	RBM38	100	96.653	ENSCATG00000032133	RBM38	100	99.174	Cercocebus_atys
ENSUAMG00000019780	RBM38	96	95.652	ENSCLAG00000005906	RBM38	100	95.652	Chinchilla_lanigera
ENSUAMG00000019780	RBM38	100	96.653	ENSCSAG00000015503	RBM38	100	96.653	Chlorocebus_sabaeus
ENSUAMG00000019780	RBM38	90	81.651	ENSCPBG00000024059	RBM38	100	81.193	Chrysemys_picta_bellii
ENSUAMG00000019780	RBM38	99	73.950	ENSCANG00000030105	-	89	72.689	Colobus_angolensis_palliatus
ENSUAMG00000019780	RBM38	100	91.213	ENSCGRG00001012928	Rbm38	100	91.213	Cricetulus_griseus_chok1gshd
ENSUAMG00000019780	RBM38	62	67.333	ENSCSEG00000020943	rbm38	60	60.326	Cynoglossus_semilaevis
ENSUAMG00000019780	RBM38	89	70.320	ENSCSEG00000004701	-	93	68.950	Cynoglossus_semilaevis
ENSUAMG00000019780	RBM38	89	67.241	ENSCVAG00000005472	-	72	77.473	Cyprinodon_variegatus
ENSUAMG00000019780	RBM38	88	56.897	ENSCVAG00000015952	rbm38	74	64.894	Cyprinodon_variegatus
ENSUAMG00000019780	RBM38	88	64.126	ENSDARG00000058818	rbm38	74	72.928	Danio_rerio
ENSUAMG00000019780	RBM38	90	89.815	ENSDNOG00000032004	RBM38	100	89.352	Dasypus_novemcinctus
ENSUAMG00000019780	RBM38	61	67.123	ENSEBUG00000015164	rbm38	88	67.123	Eptatretus_burgeri
ENSUAMG00000019780	RBM38	100	95.397	ENSECAG00000007700	RBM38	100	95.397	Equus_caballus
ENSUAMG00000019780	RBM38	100	93.333	ENSEEUG00000013489	RBM38	100	94.583	Erinaceus_europaeus
ENSUAMG00000019780	RBM38	84	65.174	ENSELUG00000000585	-	80	68.478	Esox_lucius
ENSUAMG00000019780	RBM38	90	66.667	ENSELUG00000005849	-	95	66.667	Esox_lucius
ENSUAMG00000019780	RBM38	100	98.745	ENSFCAG00000042916	RBM38	100	99.174	Felis_catus
ENSUAMG00000019780	RBM38	74	83.146	ENSFALG00000010805	RBM38	93	83.240	Ficedula_albicollis
ENSUAMG00000019780	RBM38	89	72.222	ENSFHEG00000006160	-	92	70.833	Fundulus_heteroclitus
ENSUAMG00000019780	RBM38	89	57.082	ENSFHEG00000017748	rbm38	75	63.492	Fundulus_heteroclitus
ENSUAMG00000019780	RBM38	75	73.626	ENSGMOG00000016655	-	96	75.275	Gadus_morhua
ENSUAMG00000019780	RBM38	90	79.817	ENSGALG00000026081	RBM38	100	79.817	Gallus_gallus
ENSUAMG00000019780	RBM38	90	68.000	ENSGACG00000009873	-	100	67.411	Gasterosteus_aculeatus
ENSUAMG00000019780	RBM38	89	62.736	ENSGACG00000015224	rbm38	98	60.550	Gasterosteus_aculeatus
ENSUAMG00000019780	RBM38	90	82.110	ENSGAGG00000001187	RBM38	100	81.651	Gopherus_agassizii
ENSUAMG00000019780	RBM38	96	58.577	ENSHBUG00000012058	rbm38	98	58.577	Haplochromis_burtoni
ENSUAMG00000019780	RBM38	89	71.689	ENSHBUG00000011778	-	92	71.689	Haplochromis_burtoni
ENSUAMG00000019780	RBM38	100	91.632	ENSHGLG00000015077	RBM38	100	91.632	Heterocephalus_glaber_female
ENSUAMG00000019780	RBM38	79	72.396	ENSHCOG00000005622	-	54	73.438	Hippocampus_comes
ENSUAMG00000019780	RBM38	69	62.874	ENSHCOG00000019040	rbm38	70	62.874	Hippocampus_comes
ENSUAMG00000019780	RBM38	91	65.517	ENSIPUG00000019349	-	95	65.517	Ictalurus_punctatus
ENSUAMG00000019780	RBM38	88	53.814	ENSKMAG00000012402	rbm38	98	53.390	Kryptolebias_marmoratus
ENSUAMG00000019780	RBM38	89	58.798	ENSLBEG00000018878	rbm38	91	58.369	Labrus_bergylta
ENSUAMG00000019780	RBM38	89	69.863	ENSLBEG00000016163	RBM38	92	70.776	Labrus_bergylta
ENSUAMG00000019780	RBM38	91	72.889	ENSLOCG00000003456	rbm38	95	72.889	Lepisosteus_oculatus
ENSUAMG00000019780	RBM38	98	96.596	ENSMFAG00000043808	RBM38	97	99.145	Macaca_fascicularis
ENSUAMG00000019780	RBM38	100	96.653	ENSMMUG00000031391	RBM38	100	99.174	Macaca_mulatta
ENSUAMG00000019780	RBM38	100	96.653	ENSMNEG00000034683	RBM38	100	99.174	Macaca_nemestrina
ENSUAMG00000019780	RBM38	91	64.706	ENSMAMG00000020499	RBM38	95	64.831	Mastacembelus_armatus
ENSUAMG00000019780	RBM38	89	59.227	ENSMAMG00000024135	rbm38	91	59.227	Mastacembelus_armatus
ENSUAMG00000019780	RBM38	89	71.689	ENSMZEG00005000849	-	92	71.689	Maylandia_zebra
ENSUAMG00000019780	RBM38	90	57.143	ENSMZEG00005026036	rbm38	74	63.830	Maylandia_zebra
ENSUAMG00000019780	RBM38	100	91.632	ENSMAUG00000021211	Rbm38	100	91.632	Mesocricetus_auratus
ENSUAMG00000019780	RBM38	90	96.759	ENSMICG00000038011	RBM38	100	96.759	Microcebus_murinus
ENSUAMG00000019780	RBM38	100	90.795	ENSMOCG00000008715	Rbm38	100	90.795	Microtus_ochrogaster
ENSUAMG00000019780	RBM38	99	67.083	ENSMMOG00000020051	-	99	66.250	Mola_mola
ENSUAMG00000019780	RBM38	100	79.668	ENSMODG00000016458	RBM38	100	79.668	Monodelphis_domestica
ENSUAMG00000019780	RBM38	77	74.074	ENSMALG00000004680	RBM38	70	74.074	Monopterus_albus
ENSUAMG00000019780	RBM38	64	69.677	ENSMALG00000022327	rbm38	67	69.677	Monopterus_albus
ENSUAMG00000019780	RBM38	100	92.469	MGP_CAROLIEiJ_G0024745	Rbm38	100	92.469	Mus_caroli
ENSUAMG00000019780	RBM38	100	92.887	ENSMUSG00000027510	Rbm38	100	92.887	Mus_musculus
ENSUAMG00000019780	RBM38	100	92.050	MGP_PahariEiJ_G0026186	Rbm38	100	92.050	Mus_pahari
ENSUAMG00000019780	RBM38	100	92.469	MGP_SPRETEiJ_G0025665	Rbm38	100	92.469	Mus_spretus
ENSUAMG00000019780	RBM38	78	100.000	ENSMPUG00000006518	RBM38	93	100.000	Mustela_putorius_furo
ENSUAMG00000019780	RBM38	90	91.204	ENSMLUG00000011140	RBM38	100	91.204	Myotis_lucifugus
ENSUAMG00000019780	RBM38	89	67.672	ENSNBRG00000022545	-	73	75.676	Neolamprologus_brichardi
ENSUAMG00000019780	RBM38	96	59.583	ENSNBRG00000022685	rbm38	98	59.583	Neolamprologus_brichardi
ENSUAMG00000019780	RBM38	58	79.710	ENSMEUG00000005475	-	100	79.710	Notamacropus_eugenii
ENSUAMG00000019780	RBM38	100	95.816	ENSODEG00000007980	RBM38	100	95.816	Octodon_degus
ENSUAMG00000019780	RBM38	90	57.384	ENSONIG00000017073	rbm38	76	64.362	Oreochromis_niloticus
ENSUAMG00000019780	RBM38	88	67.532	ENSONIG00000020324	-	74	75.676	Oreochromis_niloticus
ENSUAMG00000019780	RBM38	97	77.586	ENSOANG00000009259	RBM38	90	75.847	Ornithorhynchus_anatinus
ENSUAMG00000019780	RBM38	89	55.983	ENSORLG00000012154	rbm38	74	61.702	Oryzias_latipes
ENSUAMG00000019780	RBM38	89	65.236	ENSORLG00000027180	-	92	66.094	Oryzias_latipes
ENSUAMG00000019780	RBM38	89	65.236	ENSORLG00020020751	-	95	63.710	Oryzias_latipes_hni
ENSUAMG00000019780	RBM38	90	55.649	ENSORLG00020017871	rbm38	74	62.766	Oryzias_latipes_hni
ENSUAMG00000019780	RBM38	89	64.655	ENSORLG00015017040	-	92	66.379	Oryzias_latipes_hsok
ENSUAMG00000019780	RBM38	97	57.447	ENSORLG00015012606	rbm38	97	57.447	Oryzias_latipes_hsok
ENSUAMG00000019780	RBM38	89	64.224	ENSOMEG00000023912	-	92	65.368	Oryzias_melastigma
ENSUAMG00000019780	RBM38	90	55.230	ENSOMEG00000006805	rbm38	74	62.766	Oryzias_melastigma
ENSUAMG00000019780	RBM38	100	96.667	ENSOGAG00000029136	RBM38	100	96.667	Otolemur_garnettii
ENSUAMG00000019780	RBM38	100	98.745	ENSPPRG00000009507	RBM38	100	99.174	Panthera_pardus
ENSUAMG00000019780	RBM38	52	99.194	ENSPTRG00000045845	-	68	99.194	Pan_troglodytes
ENSUAMG00000019780	RBM38	87	94.712	ENSPTRG00000013661	RBM38	100	98.347	Pan_troglodytes
ENSUAMG00000019780	RBM38	100	96.653	ENSPANG00000020919	-	100	99.174	Papio_anubis
ENSUAMG00000019780	RBM38	99	73.529	ENSPANG00000033127	-	100	71.849	Papio_anubis
ENSUAMG00000019780	RBM38	91	67.401	ENSPKIG00000018122	-	100	87.179	Paramormyrops_kingsleyae
ENSUAMG00000019780	RBM38	94	63.934	ENSPKIG00000025417	rbm38	98	63.525	Paramormyrops_kingsleyae
ENSUAMG00000019780	RBM38	93	79.911	ENSPSIG00000011649	RBM38	95	79.464	Pelodiscus_sinensis
ENSUAMG00000019780	RBM38	89	61.538	ENSPMGG00000017094	-	72	72.283	Periophthalmus_magnuspinnatus
ENSUAMG00000019780	RBM38	90	56.723	ENSPMGG00000011343	rbm38	74	65.054	Periophthalmus_magnuspinnatus
ENSUAMG00000019780	RBM38	100	78.838	ENSPCIG00000013648	RBM38	100	78.423	Phascolarctos_cinereus
ENSUAMG00000019780	RBM38	89	55.128	ENSPFOG00000011658	rbm38	74	64.021	Poecilia_formosa
ENSUAMG00000019780	RBM38	89	55.983	ENSPLAG00000005218	rbm38	74	64.021	Poecilia_latipinna
ENSUAMG00000019780	RBM38	89	66.525	ENSPLAG00000002500	-	72	77.838	Poecilia_latipinna
ENSUAMG00000019780	RBM38	89	55.128	ENSPMEG00000015770	rbm38	74	64.021	Poecilia_mexicana
ENSUAMG00000019780	RBM38	89	55.556	ENSPREG00000007398	rbm38	74	64.550	Poecilia_reticulata
ENSUAMG00000019780	RBM38	100	96.667	ENSPCOG00000026201	RBM38	100	98.361	Propithecus_coquereli
ENSUAMG00000019780	RBM38	100	67.364	ENSPVAG00000006457	RBM38	100	67.364	Pteropus_vampyrus
ENSUAMG00000019780	RBM38	96	58.650	ENSPNYG00000021373	rbm38	98	55.466	Pundamilia_nyererei
ENSUAMG00000019780	RBM38	89	71.689	ENSPNYG00000019727	-	100	88.889	Pundamilia_nyererei
ENSUAMG00000019780	RBM38	85	65.728	ENSPNAG00000010596	rbm38	76	70.968	Pygocentrus_nattereri
ENSUAMG00000019780	RBM38	91	67.826	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
ENSUAMG00000019780	RBM38	100	92.469	ENSRNOG00000006420	Rbm38	100	92.469	Rattus_norvegicus
ENSUAMG00000019780	RBM38	100	78.661	ENSRROG00000036388	-	100	76.987	Rhinopithecus_roxellana
ENSUAMG00000019780	RBM38	90	94.907	ENSSBOG00000031053	RBM38	100	99.065	Saimiri_boliviensis_boliviensis
ENSUAMG00000019780	RBM38	89	67.727	ENSSFOG00015004453	rbm38	92	70.000	Scleropages_formosus
ENSUAMG00000019780	RBM38	89	66.524	ENSSDUG00000021082	RBM38	92	66.810	Seriola_dumerili
ENSUAMG00000019780	RBM38	89	60.086	ENSSDUG00000022611	rbm38	74	65.957	Seriola_dumerili
ENSUAMG00000019780	RBM38	89	62.791	ENSSLDG00000010845	rbm38	90	62.791	Seriola_lalandi_dorsalis
ENSUAMG00000019780	RBM38	89	66.524	ENSSLDG00000011778	RBM38	92	66.810	Seriola_lalandi_dorsalis
ENSUAMG00000019780	RBM38	90	58.403	ENSSPAG00000011113	rbm38	74	64.894	Stegastes_partitus
ENSUAMG00000019780	RBM38	89	68.224	ENSSPAG00000020989	RBM38	91	69.302	Stegastes_partitus
ENSUAMG00000019780	RBM38	100	98.326	ENSSSCG00000007504	RBM38	100	98.326	Sus_scrofa
ENSUAMG00000019780	RBM38	89	65.948	ENSTRUG00000019869	-	92	67.382	Takifugu_rubripes
ENSUAMG00000019780	RBM38	89	56.332	ENSTRUG00000024954	rbm38	75	62.234	Takifugu_rubripes
ENSUAMG00000019780	RBM38	89	69.683	ENSTNIG00000007093	-	97	70.270	Tetraodon_nigroviridis
ENSUAMG00000019780	RBM38	50	89.076	ENSTBEG00000001689	-	50	89.076	Tupaia_belangeri
ENSUAMG00000019780	RBM38	100	97.908	ENSVVUG00000017246	RBM38	100	97.908	Vulpes_vulpes
ENSUAMG00000019780	RBM38	92	72.889	ENSXETG00000011268	rbm38	100	72.889	Xenopus_tropicalis
ENSUAMG00000019780	RBM38	89	57.511	ENSXMAG00000023662	rbm38	74	64.362	Xiphophorus_maculatus