EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000020065 (Gene tree)
Gene ID: -
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 50119 bases
Position: chrLZNR01011524.1:51772-101890
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000025838	DND1_DSRM	PF14709.7	1.7e-24	1	1
ENSUAMP00000025838	RRM_1	PF00076.22	5.3e-40	1	3
ENSUAMP00000025838	RRM_1	PF00076.22	5.3e-40	2	3
ENSUAMP00000025838	RRM_1	PF00076.22	5.3e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000028827	A1CF-201	1822	-	ENSUAMP00000025838	584 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000020065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000020065's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000020065	A1CF	54	51.266	ENSUAMG00000027050	HNRNPR	50	51.266
ENSUAMG00000020065	A1CF	74	58.652	ENSUAMG00000021346	RBM47	73	58.482
ENSUAMG00000020065	A1CF	52	51.780	ENSUAMG00000008543	SYNCRIP	57	50.769
ENSUAMG00000020065	A1CF	76	71.000	ENSUAMG00000026593	RBM46	82	71.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000020065	A1CF	100	95.563	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
ENSUAMG00000020065	A1CF	100	74.199	ENSAPOG00000008259	a1cf	100	74.030	Acanthochromis_polyacanthus
ENSUAMG00000020065	A1CF	100	98.311	ENSAMEG00000000523	A1CF	100	98.311	Ailuropoda_melanoleuca
ENSUAMG00000020065	A1CF	100	76.198	ENSACIG00000008632	a1cf	100	77.686	Amphilophus_citrinellus
ENSUAMG00000020065	A1CF	100	74.709	ENSAOCG00000023744	a1cf	96	83.478	Amphiprion_ocellaris
ENSUAMG00000020065	A1CF	100	73.563	ENSAPEG00000009537	a1cf	100	74.220	Amphiprion_percula
ENSUAMG00000020065	A1CF	100	76.238	ENSATEG00000013720	a1cf	100	77.558	Anabas_testudineus
ENSUAMG00000020065	A1CF	100	87.015	ENSAPLG00000002964	A1CF	100	86.847	Anas_platyrhynchos
ENSUAMG00000020065	A1CF	100	84.103	ENSACAG00000015269	A1CF	100	83.761	Anolis_carolinensis
ENSUAMG00000020065	A1CF	100	95.734	ENSANAG00000019974	A1CF	100	95.734	Aotus_nancymaae
ENSUAMG00000020065	A1CF	100	74.210	ENSACLG00000017428	a1cf	100	75.707	Astatotilapia_calliptera
ENSUAMG00000020065	A1CF	100	72.727	ENSAMXG00000018180	a1cf	100	72.727	Astyanax_mexicanus
ENSUAMG00000020065	A1CF	100	95.741	ENSBTAG00000021195	A1CF	100	96.468	Bos_taurus
ENSUAMG00000020065	A1CF	100	94.781	ENSCJAG00000005045	A1CF	100	94.781	Callithrix_jacchus
ENSUAMG00000020065	A1CF	100	96.284	ENSCAFG00000015581	A1CF	100	96.284	Canis_familiaris
ENSUAMG00000020065	A1CF	100	96.284	ENSCAFG00020026421	A1CF	98	98.316	Canis_lupus_dingo
ENSUAMG00000020065	A1CF	100	93.445	ENSCHIG00000020411	A1CF	100	93.613	Capra_hircus
ENSUAMG00000020065	A1CF	94	95.281	ENSTSYG00000001755	A1CF	100	95.281	Carlito_syrichta
ENSUAMG00000020065	A1CF	100	81.288	ENSCAPG00000017386	A1CF	100	81.288	Cavia_aperea
ENSUAMG00000020065	A1CF	100	93.098	ENSCPOG00000009807	A1CF	100	93.098	Cavia_porcellus
ENSUAMG00000020065	A1CF	100	94.604	ENSCCAG00000018168	A1CF	100	94.604	Cebus_capucinus
ENSUAMG00000020065	A1CF	100	95.890	ENSCATG00000043715	A1CF	100	95.890	Cercocebus_atys
ENSUAMG00000020065	A1CF	100	92.953	ENSCLAG00000010424	A1CF	100	92.617	Chinchilla_lanigera
ENSUAMG00000020065	A1CF	100	94.426	ENSCSAG00000007032	A1CF	100	94.426	Chlorocebus_sabaeus
ENSUAMG00000020065	A1CF	98	90.893	ENSCHOG00000009089	A1CF	98	90.893	Choloepus_hoffmanni
ENSUAMG00000020065	A1CF	100	86.678	ENSCPBG00000026464	A1CF	100	86.341	Chrysemys_picta_bellii
ENSUAMG00000020065	A1CF	100	94.595	ENSCANG00000038032	A1CF	100	94.595	Colobus_angolensis_palliatus
ENSUAMG00000020065	A1CF	100	91.429	ENSCGRG00001017413	A1cf	100	91.597	Cricetulus_griseus_chok1gshd
ENSUAMG00000020065	A1CF	100	90.588	ENSCGRG00000017332	A1cf	100	91.597	Cricetulus_griseus_crigri
ENSUAMG00000020065	A1CF	100	73.300	ENSCSEG00000002361	a1cf	100	74.793	Cynoglossus_semilaevis
ENSUAMG00000020065	A1CF	100	75.248	ENSCVAG00000010520	a1cf	100	76.898	Cyprinodon_variegatus
ENSUAMG00000020065	A1CF	100	79.492	ENSDARG00000002968	a1cf	100	80.847	Danio_rerio
ENSUAMG00000020065	A1CF	100	92.941	ENSDNOG00000002829	A1CF	100	92.941	Dasypus_novemcinctus
ENSUAMG00000020065	A1CF	82	91.304	ENSETEG00000012527	A1CF	81	91.304	Echinops_telfairi
ENSUAMG00000020065	A1CF	100	95.142	ENSEASG00005012924	A1CF	100	95.142	Equus_asinus_asinus
ENSUAMG00000020065	A1CF	100	94.807	ENSECAG00000010424	A1CF	100	94.807	Equus_caballus
ENSUAMG00000020065	A1CF	78	81.878	ENSEEUG00000000013	A1CF	97	83.032	Erinaceus_europaeus
ENSUAMG00000020065	A1CF	100	77.090	ENSELUG00000003159	a1cf	100	77.926	Esox_lucius
ENSUAMG00000020065	A1CF	100	96.404	ENSFCAG00000011179	A1CF	100	96.404	Felis_catus
ENSUAMG00000020065	A1CF	100	87.179	ENSFALG00000013183	A1CF	100	86.838	Ficedula_albicollis
ENSUAMG00000020065	A1CF	100	93.697	ENSFDAG00000019371	A1CF	100	93.526	Fukomys_damarensis
ENSUAMG00000020065	A1CF	100	70.627	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSUAMG00000020065	A1CF	100	70.248	ENSGMOG00000018943	a1cf	100	70.248	Gadus_morhua
ENSUAMG00000020065	A1CF	95	86.655	ENSGALG00000003765	A1CF	97	86.299	Gallus_gallus
ENSUAMG00000020065	A1CF	100	70.667	ENSGAFG00000014868	a1cf	100	71.667	Gambusia_affinis
ENSUAMG00000020065	A1CF	100	72.204	ENSGACG00000010241	a1cf	100	72.862	Gasterosteus_aculeatus
ENSUAMG00000020065	A1CF	94	86.429	ENSGAGG00000016508	A1CF	97	86.071	Gopherus_agassizii
ENSUAMG00000020065	A1CF	100	94.444	ENSGGOG00000009670	A1CF	100	94.276	Gorilla_gorilla
ENSUAMG00000020065	A1CF	100	74.876	ENSHBUG00000021959	a1cf	100	77.025	Haplochromis_burtoni
ENSUAMG00000020065	A1CF	100	93.277	ENSHGLG00000008955	A1CF	100	92.941	Heterocephalus_glaber_female
ENSUAMG00000020065	A1CF	100	92.605	ENSHGLG00100000518	A1CF	100	92.269	Heterocephalus_glaber_male
ENSUAMG00000020065	A1CF	100	69.281	ENSHCOG00000017669	a1cf	100	72.801	Hippocampus_comes
ENSUAMG00000020065	A1CF	92	79.570	ENSIPUG00000010367	a1cf	99	79.892	Ictalurus_punctatus
ENSUAMG00000020065	A1CF	100	75.122	ENSKMAG00000006568	a1cf	100	76.098	Kryptolebias_marmoratus
ENSUAMG00000020065	A1CF	99	73.970	ENSLBEG00000020994	a1cf	98	75.124	Labrus_bergylta
ENSUAMG00000020065	A1CF	100	82.143	ENSLACG00000008061	A1CF	100	82.143	Latimeria_chalumnae
ENSUAMG00000020065	A1CF	100	80.067	ENSLOCG00000006302	a1cf	100	80.067	Lepisosteus_oculatus
ENSUAMG00000020065	A1CF	100	92.437	ENSLAFG00000015462	A1CF	100	92.605	Loxodonta_africana
ENSUAMG00000020065	A1CF	100	96.062	ENSMFAG00000035948	A1CF	100	96.062	Macaca_fascicularis
ENSUAMG00000020065	A1CF	100	96.062	ENSMMUG00000007077	A1CF	100	96.062	Macaca_mulatta
ENSUAMG00000020065	A1CF	100	95.719	ENSMNEG00000031454	A1CF	100	95.719	Macaca_nemestrina
ENSUAMG00000020065	A1CF	100	94.595	ENSMLEG00000037223	A1CF	100	94.595	Mandrillus_leucophaeus
ENSUAMG00000020065	A1CF	100	73.798	ENSMAMG00000010402	a1cf	100	75.993	Mastacembelus_armatus
ENSUAMG00000020065	A1CF	100	74.539	ENSMZEG00005013245	a1cf	100	75.544	Maylandia_zebra
ENSUAMG00000020065	A1CF	100	86.869	ENSMGAG00000001507	A1CF	100	86.532	Meleagris_gallopavo
ENSUAMG00000020065	A1CF	100	90.924	ENSMAUG00000007422	A1cf	100	91.092	Mesocricetus_auratus
ENSUAMG00000020065	A1CF	100	94.407	ENSMICG00000003377	A1CF	100	94.576	Microcebus_murinus
ENSUAMG00000020065	A1CF	100	91.092	ENSMOCG00000021536	A1cf	100	91.092	Microtus_ochrogaster
ENSUAMG00000020065	A1CF	100	68.386	ENSMMOG00000009422	a1cf	100	70.333	Mola_mola
ENSUAMG00000020065	A1CF	92	90.130	ENSMODG00000016478	A1CF	97	90.787	Monodelphis_domestica
ENSUAMG00000020065	A1CF	100	73.684	ENSMALG00000012992	a1cf	100	73.514	Monopterus_albus
ENSUAMG00000020065	A1CF	100	92.164	MGP_CAROLIEiJ_G0022873	A1cf	100	91.993	Mus_caroli
ENSUAMG00000020065	A1CF	100	92.164	ENSMUSG00000052595	A1cf	99	94.751	Mus_musculus
ENSUAMG00000020065	A1CF	100	91.652	MGP_PahariEiJ_G0014366	A1cf	100	91.141	Mus_pahari
ENSUAMG00000020065	A1CF	100	91.652	MGP_SPRETEiJ_G0023792	A1cf	100	91.482	Mus_spretus
ENSUAMG00000020065	A1CF	100	89.865	ENSMPUG00000016971	A1CF	100	89.865	Mustela_putorius_furo
ENSUAMG00000020065	A1CF	100	93.445	ENSMLUG00000016071	A1CF	100	93.613	Myotis_lucifugus
ENSUAMG00000020065	A1CF	100	92.437	ENSNGAG00000015136	A1cf	100	92.437	Nannospalax_galili
ENSUAMG00000020065	A1CF	100	75.041	ENSNBRG00000001712	a1cf	100	77.190	Neolamprologus_brichardi
ENSUAMG00000020065	A1CF	100	94.958	ENSNLEG00000012028	A1CF	100	94.958	Nomascus_leucogenys
ENSUAMG00000020065	A1CF	94	89.493	ENSMEUG00000015909	A1CF	100	89.312	Notamacropus_eugenii
ENSUAMG00000020065	A1CF	89	82.286	ENSOPRG00000010667	A1CF	97	82.386	Ochotona_princeps
ENSUAMG00000020065	A1CF	100	75.372	ENSONIG00000019105	a1cf	100	76.860	Oreochromis_niloticus
ENSUAMG00000020065	A1CF	78	89.107	ENSOANG00000007360	A1CF	99	89.107	Ornithorhynchus_anatinus
ENSUAMG00000020065	A1CF	100	92.857	ENSOCUG00000011587	A1CF	100	93.197	Oryctolagus_cuniculus
ENSUAMG00000020065	A1CF	100	72.846	ENSORLG00000013342	a1cf	100	72.846	Oryzias_latipes
ENSUAMG00000020065	A1CF	100	74.468	ENSORLG00020000586	a1cf	100	74.510	Oryzias_latipes_hni
ENSUAMG00000020065	A1CF	100	74.304	ENSORLG00015018569	a1cf	100	74.346	Oryzias_latipes_hsok
ENSUAMG00000020065	A1CF	100	75.622	ENSOMEG00000013531	a1cf	100	75.290	Oryzias_melastigma
ENSUAMG00000020065	A1CF	100	93.412	ENSOGAG00000012884	A1CF	100	93.412	Otolemur_garnettii
ENSUAMG00000020065	A1CF	100	93.445	ENSOARG00000013695	A1CF	100	93.613	Ovis_aries
ENSUAMG00000020065	A1CF	97	92.361	ENSPPAG00000028115	A1CF	100	95.142	Pan_paniscus
ENSUAMG00000020065	A1CF	100	95.101	ENSPPRG00000012180	A1CF	100	95.101	Panthera_pardus
ENSUAMG00000020065	A1CF	100	95.101	ENSPTIG00000021223	A1CF	100	95.101	Panthera_tigris_altaica
ENSUAMG00000020065	A1CF	100	95.563	ENSPTRG00000002508	A1CF	100	95.392	Pan_troglodytes
ENSUAMG00000020065	A1CF	100	96.062	ENSPANG00000021988	A1CF	100	96.062	Papio_anubis
ENSUAMG00000020065	A1CF	100	79.431	ENSPKIG00000025176	a1cf	100	79.097	Paramormyrops_kingsleyae
ENSUAMG00000020065	A1CF	100	87.521	ENSPSIG00000010318	A1CF	100	87.350	Pelodiscus_sinensis
ENSUAMG00000020065	A1CF	88	71.373	ENSPMGG00000013359	a1cf	99	68.000	Periophthalmus_magnuspinnatus
ENSUAMG00000020065	A1CF	100	92.437	ENSPEMG00000015021	A1cf	100	91.933	Peromyscus_maniculatus_bairdii
ENSUAMG00000020065	A1CF	100	89.402	ENSPCIG00000002175	A1CF	100	89.231	Phascolarctos_cinereus
ENSUAMG00000020065	A1CF	100	74.430	ENSPFOG00000007437	-	100	76.059	Poecilia_formosa
ENSUAMG00000020065	A1CF	100	74.430	ENSPFOG00000006683	a1cf	100	76.059	Poecilia_formosa
ENSUAMG00000020065	A1CF	100	75.413	ENSPLAG00000001210	-	100	77.063	Poecilia_latipinna
ENSUAMG00000020065	A1CF	100	75.413	ENSPLAG00000000026	a1cf	100	77.063	Poecilia_latipinna
ENSUAMG00000020065	A1CF	100	66.830	ENSPMEG00000015529	-	100	68.464	Poecilia_mexicana
ENSUAMG00000020065	A1CF	100	67.715	ENSPMEG00000000921	a1cf	100	69.371	Poecilia_mexicana
ENSUAMG00000020065	A1CF	100	74.430	ENSPREG00000016298	a1cf	100	75.896	Poecilia_reticulata
ENSUAMG00000020065	A1CF	100	96.082	ENSPPYG00000002819	A1CF	100	96.082	Pongo_abelii
ENSUAMG00000020065	A1CF	79	74.138	ENSPCAG00000006463	A1CF	70	91.837	Procavia_capensis
ENSUAMG00000020065	A1CF	100	93.624	ENSPCOG00000024172	A1CF	100	93.624	Propithecus_coquereli
ENSUAMG00000020065	A1CF	100	74.062	ENSPNYG00000017944	a1cf	100	76.183	Pundamilia_nyererei
ENSUAMG00000020065	A1CF	100	80.369	ENSPNAG00000007704	a1cf	100	80.369	Pygocentrus_nattereri
ENSUAMG00000020065	A1CF	100	92.675	ENSRNOG00000033195	A1cf	100	92.504	Rattus_norvegicus
ENSUAMG00000020065	A1CF	100	88.047	ENSRBIG00000042892	A1CF	100	94.200	Rhinopithecus_bieti
ENSUAMG00000020065	A1CF	100	94.764	ENSRROG00000041398	A1CF	100	94.764	Rhinopithecus_roxellana
ENSUAMG00000020065	A1CF	100	94.454	ENSSBOG00000021930	A1CF	100	94.831	Saimiri_boliviensis_boliviensis
ENSUAMG00000020065	A1CF	100	88.718	ENSSHAG00000005096	A1CF	100	88.718	Sarcophilus_harrisii
ENSUAMG00000020065	A1CF	100	79.496	ENSSFOG00015011774	a1cf	100	79.664	Scleropages_formosus
ENSUAMG00000020065	A1CF	100	72.964	ENSSMAG00000013271	a1cf	100	73.453	Scophthalmus_maximus
ENSUAMG00000020065	A1CF	100	74.627	ENSSDUG00000013930	a1cf	100	75.290	Seriola_dumerili
ENSUAMG00000020065	A1CF	100	69.900	ENSSLDG00000004290	a1cf	100	71.070	Seriola_lalandi_dorsalis
ENSUAMG00000020065	A1CF	95	84.588	ENSSARG00000005940	A1CF	96	84.588	Sorex_araneus
ENSUAMG00000020065	A1CF	95	85.866	ENSSPUG00000006797	A1CF	95	85.866	Sphenodon_punctatus
ENSUAMG00000020065	A1CF	100	93.782	ENSSSCG00000010431	A1CF	100	93.782	Sus_scrofa
ENSUAMG00000020065	A1CF	100	85.953	ENSTGUG00000005090	A1CF	100	85.953	Taeniopygia_guttata
ENSUAMG00000020065	A1CF	100	72.920	ENSTRUG00000001982	a1cf	100	72.920	Takifugu_rubripes
ENSUAMG00000020065	A1CF	100	73.333	ENSTNIG00000003580	a1cf	100	73.171	Tetraodon_nigroviridis
ENSUAMG00000020065	A1CF	97	87.873	ENSTTRG00000013190	A1CF	95	88.049	Tursiops_truncatus
ENSUAMG00000020065	A1CF	100	98.142	ENSUMAG00000011162	A1CF	100	98.142	Ursus_maritimus
ENSUAMG00000020065	A1CF	87	90.448	ENSVPAG00000006130	A1CF	86	90.253	Vicugna_pacos
ENSUAMG00000020065	A1CF	100	97.432	ENSVVUG00000002504	A1CF	100	97.432	Vulpes_vulpes
ENSUAMG00000020065	A1CF	100	77.722	ENSXETG00000006611	a1cf	100	77.554	Xenopus_tropicalis
ENSUAMG00000020065	A1CF	100	76.412	ENSXCOG00000003302	a1cf	100	77.575	Xiphophorus_couchianus
ENSUAMG00000020065	A1CF	100	75.410	ENSXMAG00000016703	a1cf	100	76.557	Xiphophorus_maculatus