EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000023560 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 103436 bases
Position: chrLZNR01002219.1:53351-156786
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000030810	Upf2	PF04050.14	9.2e-23	1	1
ENSUAMP00000030835	Upf2	PF04050.14	2.8e-07	1	1
ENSUAMP00000030842	MIF4G	PF02854.19	1.5e-76	1	3
ENSUAMP00000030842	MIF4G	PF02854.19	1.5e-76	2	3
ENSUAMP00000030842	MIF4G	PF02854.19	1.5e-76	3	3
ENSUAMP00000030835	MIF4G	PF02854.19	3.4e-76	1	3
ENSUAMP00000030835	MIF4G	PF02854.19	3.4e-76	2	3
ENSUAMP00000030835	MIF4G	PF02854.19	3.4e-76	3	3
ENSUAMP00000030810	MIF4G	PF02854.19	4.1e-76	1	3
ENSUAMP00000030810	MIF4G	PF02854.19	4.1e-76	2	3
ENSUAMP00000030810	MIF4G	PF02854.19	4.1e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000034406	UPF2-203	3252	-	ENSUAMP00000030842	1083 (aa)	-	-
ENSUAMT00000034370	UPF2-201	3618	-	ENSUAMP00000030810	1205 (aa)	-	-
ENSUAMT00000034399	UPF2-202	3489	-	ENSUAMP00000030835	1162 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000023560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000023560's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000023560	UPF2	99	100.000	ENSG00000151461	UPF2	94	100.000	Homo_sapiens
ENSUAMG00000023560	UPF2	95	94.382	ENSAPOG00000015837	UPF2	88	94.382	Acanthochromis_polyacanthus
ENSUAMG00000023560	UPF2	100	99.716	ENSAMEG00000004586	UPF2	94	100.000	Ailuropoda_melanoleuca
ENSUAMG00000023560	UPF2	98	94.382	ENSACIG00000018078	UPF2	87	94.382	Amphilophus_citrinellus
ENSUAMG00000023560	UPF2	98	94.382	ENSAOCG00000016766	UPF2	88	94.382	Amphiprion_ocellaris
ENSUAMG00000023560	UPF2	98	94.382	ENSAPEG00000019084	UPF2	88	94.382	Amphiprion_percula
ENSUAMG00000023560	UPF2	98	94.382	ENSATEG00000021677	UPF2	86	94.382	Anabas_testudineus
ENSUAMG00000023560	UPF2	97	100.000	ENSAPLG00000010287	UPF2	83	97.222	Anas_platyrhynchos
ENSUAMG00000023560	UPF2	99	98.876	ENSACAG00000009259	UPF2	92	97.222	Anolis_carolinensis
ENSUAMG00000023560	UPF2	99	100.000	ENSANAG00000028451	UPF2	91	100.000	Aotus_nancymaae
ENSUAMG00000023560	UPF2	98	94.382	ENSACLG00000012696	UPF2	87	94.382	Astatotilapia_calliptera
ENSUAMG00000023560	UPF2	98	95.506	ENSAMXG00000013700	UPF2	87	95.506	Astyanax_mexicanus
ENSUAMG00000023560	UPF2	100	99.054	ENSBTAG00000000288	UPF2	94	99.306	Bos_taurus
ENSUAMG00000023560	UPF2	99	100.000	ENSCJAG00000020685	UPF2	94	100.000	Callithrix_jacchus
ENSUAMG00000023560	UPF2	100	99.527	ENSCAFG00000004839	UPF2	94	99.527	Canis_familiaris
ENSUAMG00000023560	UPF2	100	100.000	ENSCAFG00020005882	UPF2	100	97.391	Canis_lupus_dingo
ENSUAMG00000023560	UPF2	100	99.149	ENSCHIG00000020359	UPF2	94	99.306	Capra_hircus
ENSUAMG00000023560	UPF2	99	100.000	ENSTSYG00000000935	UPF2	100	94.750	Carlito_syrichta
ENSUAMG00000023560	UPF2	91	82.416	ENSCAPG00000016658	UPF2	94	81.656	Cavia_aperea
ENSUAMG00000023560	UPF2	99	100.000	ENSCPOG00000008809	UPF2	94	100.000	Cavia_porcellus
ENSUAMG00000023560	UPF2	99	100.000	ENSCCAG00000035991	UPF2	92	100.000	Cebus_capucinus
ENSUAMG00000023560	UPF2	99	100.000	ENSCATG00000032679	UPF2	94	100.000	Cercocebus_atys
ENSUAMG00000023560	UPF2	99	100.000	ENSCLAG00000011434	UPF2	94	100.000	Chinchilla_lanigera
ENSUAMG00000023560	UPF2	99	100.000	ENSCSAG00000013372	UPF2	94	100.000	Chlorocebus_sabaeus
ENSUAMG00000023560	UPF2	84	98.884	ENSCHOG00000000422	UPF2	80	100.000	Choloepus_hoffmanni
ENSUAMG00000023560	UPF2	99	100.000	ENSCPBG00000027823	UPF2	92	97.917	Chrysemys_picta_bellii
ENSUAMG00000023560	UPF2	75	52.809	ENSCSAVG00000007772	-	88	52.450	Ciona_savignyi
ENSUAMG00000023560	UPF2	95	100.000	ENSCANG00000040396	UPF2	100	88.013	Colobus_angolensis_palliatus
ENSUAMG00000023560	UPF2	100	98.013	ENSCGRG00001019347	Upf2	95	99.306	Cricetulus_griseus_chok1gshd
ENSUAMG00000023560	UPF2	100	98.013	ENSCGRG00000017993	Upf2	95	99.306	Cricetulus_griseus_crigri
ENSUAMG00000023560	UPF2	95	85.235	ENSCSEG00000003520	UPF2	92	85.616	Cynoglossus_semilaevis
ENSUAMG00000023560	UPF2	97	93.258	ENSCVAG00000006167	UPF2	87	93.258	Cyprinodon_variegatus
ENSUAMG00000023560	UPF2	100	98.770	ENSDNOG00000018160	UPF2	94	98.770	Dasypus_novemcinctus
ENSUAMG00000023560	UPF2	99	99.306	ENSDORG00000002478	Upf2	95	99.306	Dipodomys_ordii
ENSUAMG00000023560	UPF2	86	43.011	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSUAMG00000023560	UPF2	70	100.000	ENSETEG00000011583	-	58	100.000	Echinops_telfairi
ENSUAMG00000023560	UPF2	69	68.507	ENSEBUG00000012448	-	81	84.270	Eptatretus_burgeri
ENSUAMG00000023560	UPF2	99	100.000	ENSEASG00005019274	UPF2	94	100.000	Equus_asinus_asinus
ENSUAMG00000023560	UPF2	99	100.000	ENSECAG00000017022	UPF2	94	100.000	Equus_caballus
ENSUAMG00000023560	UPF2	78	100.000	ENSEEUG00000007819	UPF2	73	96.528	Erinaceus_europaeus
ENSUAMG00000023560	UPF2	98	94.382	ENSELUG00000012014	UPF2	87	94.382	Esox_lucius
ENSUAMG00000023560	UPF2	100	99.243	ENSFCAG00000005785	UPF2	94	100.000	Felis_catus
ENSUAMG00000023560	UPF2	98	100.000	ENSFALG00000001889	UPF2	90	97.222	Ficedula_albicollis
ENSUAMG00000023560	UPF2	99	100.000	ENSFDAG00000014348	UPF2	95	99.306	Fukomys_damarensis
ENSUAMG00000023560	UPF2	97	93.258	ENSFHEG00000009826	UPF2	86	93.258	Fundulus_heteroclitus
ENSUAMG00000023560	UPF2	85	95.506	ENSGMOG00000005557	UPF2	78	95.506	Gadus_morhua
ENSUAMG00000023560	UPF2	98	100.000	ENSGALG00000033772	UPF2	92	97.222	Gallus_gallus
ENSUAMG00000023560	UPF2	98	93.258	ENSGAFG00000020867	UPF2	87	93.258	Gambusia_affinis
ENSUAMG00000023560	UPF2	88	93.258	ENSGACG00000001080	UPF2	87	93.258	Gasterosteus_aculeatus
ENSUAMG00000023560	UPF2	98	100.000	ENSGAGG00000002700	UPF2	92	97.222	Gopherus_agassizii
ENSUAMG00000023560	UPF2	99	100.000	ENSGGOG00000001479	UPF2	94	100.000	Gorilla_gorilla
ENSUAMG00000023560	UPF2	98	94.382	ENSHBUG00000004249	UPF2	87	94.382	Haplochromis_burtoni
ENSUAMG00000023560	UPF2	99	100.000	ENSHGLG00000015176	-	95	100.000	Heterocephalus_glaber_female
ENSUAMG00000023560	UPF2	96	96.629	ENSHGLG00000003822	-	87	96.629	Heterocephalus_glaber_female
ENSUAMG00000023560	UPF2	97	100.000	ENSHGLG00100010036	UPF2	81	100.000	Heterocephalus_glaber_male
ENSUAMG00000023560	UPF2	99	85.616	ENSHCOG00000004025	UPF2	87	94.382	Hippocampus_comes
ENSUAMG00000023560	UPF2	98	95.506	ENSIPUG00000015524	UPF2	87	95.506	Ictalurus_punctatus
ENSUAMG00000023560	UPF2	99	100.000	ENSSTOG00000013075	UPF2	95	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000023560	UPF2	99	100.000	ENSJJAG00000004913	Upf2	95	96.783	Jaculus_jaculus
ENSUAMG00000023560	UPF2	89	93.258	ENSKMAG00000001071	UPF2	86	93.258	Kryptolebias_marmoratus
ENSUAMG00000023560	UPF2	87	83.006	ENSLBEG00000000728	-	93	83.104	Labrus_bergylta
ENSUAMG00000023560	UPF2	99	85.135	ENSLBEG00000016394	-	91	94.382	Labrus_bergylta
ENSUAMG00000023560	UPF2	95	100.000	ENSLACG00000015945	UPF2	87	100.000	Latimeria_chalumnae
ENSUAMG00000023560	UPF2	97	96.629	ENSLOCG00000015698	UPF2	87	96.629	Lepisosteus_oculatus
ENSUAMG00000023560	UPF2	100	100.000	ENSMFAG00000043865	UPF2	94	100.000	Macaca_fascicularis
ENSUAMG00000023560	UPF2	99	100.000	ENSMMUG00000008241	UPF2	94	100.000	Macaca_mulatta
ENSUAMG00000023560	UPF2	93	97.332	ENSMNEG00000008062	UPF2	100	97.268	Macaca_nemestrina
ENSUAMG00000023560	UPF2	100	97.639	ENSMLEG00000036120	UPF2	94	100.000	Mandrillus_leucophaeus
ENSUAMG00000023560	UPF2	98	94.382	ENSMAMG00000018276	UPF2	88	94.382	Mastacembelus_armatus
ENSUAMG00000023560	UPF2	98	94.382	ENSMZEG00005021595	UPF2	87	94.382	Maylandia_zebra
ENSUAMG00000023560	UPF2	98	100.000	ENSMGAG00000004573	UPF2	92	97.203	Meleagris_gallopavo
ENSUAMG00000023560	UPF2	100	95.175	ENSMAUG00000016512	Upf2	94	99.306	Mesocricetus_auratus
ENSUAMG00000023560	UPF2	95	100.000	ENSMICG00000001716	UPF2	100	93.812	Microcebus_murinus
ENSUAMG00000023560	UPF2	100	96.973	ENSMOCG00000008263	Upf2	95	99.306	Microtus_ochrogaster
ENSUAMG00000023560	UPF2	84	93.258	ENSMMOG00000006528	UPF2	89	93.258	Mola_mola
ENSUAMG00000023560	UPF2	98	100.000	ENSMODG00000016794	UPF2	92	97.917	Monodelphis_domestica
ENSUAMG00000023560	UPF2	98	94.382	ENSMALG00000002663	UPF2	88	94.382	Monopterus_albus
ENSUAMG00000023560	UPF2	100	97.162	MGP_CAROLIEiJ_G0023157	Upf2	95	99.306	Mus_caroli
ENSUAMG00000023560	UPF2	100	97.540	ENSMUSG00000043241	Upf2	95	99.306	Mus_musculus
ENSUAMG00000023560	UPF2	100	97.067	MGP_PahariEiJ_G0019217	Upf2	95	99.306	Mus_pahari
ENSUAMG00000023560	UPF2	100	97.824	MGP_SPRETEiJ_G0024075	Upf2	95	99.306	Mus_spretus
ENSUAMG00000023560	UPF2	100	99.432	ENSMPUG00000001064	UPF2	94	100.000	Mustela_putorius_furo
ENSUAMG00000023560	UPF2	99	100.000	ENSMLUG00000000228	UPF2	95	100.000	Myotis_lucifugus
ENSUAMG00000023560	UPF2	98	94.382	ENSNBRG00000013629	UPF2	87	94.382	Neolamprologus_brichardi
ENSUAMG00000023560	UPF2	99	100.000	ENSNLEG00000012058	UPF2	100	94.400	Nomascus_leucogenys
ENSUAMG00000023560	UPF2	59	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSUAMG00000023560	UPF2	81	100.000	ENSOPRG00000006801	-	76	100.000	Ochotona_princeps
ENSUAMG00000023560	UPF2	99	100.000	ENSODEG00000001290	UPF2	94	99.306	Octodon_degus
ENSUAMG00000023560	UPF2	98	94.382	ENSONIG00000017991	UPF2	87	94.382	Oreochromis_niloticus
ENSUAMG00000023560	UPF2	99	100.000	ENSOCUG00000006230	UPF2	95	98.611	Oryctolagus_cuniculus
ENSUAMG00000023560	UPF2	98	92.135	ENSORLG00000017189	UPF2	87	92.135	Oryzias_latipes
ENSUAMG00000023560	UPF2	98	92.135	ENSORLG00020005969	UPF2	87	92.135	Oryzias_latipes_hni
ENSUAMG00000023560	UPF2	98	92.135	ENSORLG00015005713	UPF2	87	92.135	Oryzias_latipes_hsok
ENSUAMG00000023560	UPF2	98	92.135	ENSOMEG00000023420	UPF2	85	92.135	Oryzias_melastigma
ENSUAMG00000023560	UPF2	99	99.306	ENSOGAG00000005796	UPF2	94	99.306	Otolemur_garnettii
ENSUAMG00000023560	UPF2	100	98.961	ENSOARG00000014587	UPF2	95	99.306	Ovis_aries
ENSUAMG00000023560	UPF2	99	100.000	ENSPPAG00000037953	UPF2	100	92.472	Pan_paniscus
ENSUAMG00000023560	UPF2	100	99.243	ENSPPRG00000000690	UPF2	94	100.000	Panthera_pardus
ENSUAMG00000023560	UPF2	100	99.243	ENSPTIG00000008867	UPF2	94	100.000	Panthera_tigris_altaica
ENSUAMG00000023560	UPF2	99	100.000	ENSPTRG00000002291	UPF2	94	100.000	Pan_troglodytes
ENSUAMG00000023560	UPF2	99	100.000	ENSPANG00000023399	UPF2	94	100.000	Papio_anubis
ENSUAMG00000023560	UPF2	98	93.258	ENSPKIG00000025502	UPF2	87	93.258	Paramormyrops_kingsleyae
ENSUAMG00000023560	UPF2	69	92.297	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSUAMG00000023560	UPF2	99	92.135	ENSPMGG00000005259	UPF2	87	92.135	Periophthalmus_magnuspinnatus
ENSUAMG00000023560	UPF2	92	95.918	ENSPEMG00000015731	Upf2	99	95.918	Peromyscus_maniculatus_bairdii
ENSUAMG00000023560	UPF2	98	100.000	ENSPCIG00000006656	UPF2	92	97.222	Phascolarctos_cinereus
ENSUAMG00000023560	UPF2	98	93.258	ENSPFOG00000017118	UPF2	87	93.258	Poecilia_formosa
ENSUAMG00000023560	UPF2	98	93.258	ENSPLAG00000005094	UPF2	87	93.258	Poecilia_latipinna
ENSUAMG00000023560	UPF2	98	93.258	ENSPMEG00000017009	UPF2	87	93.258	Poecilia_mexicana
ENSUAMG00000023560	UPF2	98	93.258	ENSPREG00000021880	UPF2	87	93.258	Poecilia_reticulata
ENSUAMG00000023560	UPF2	64	100.000	ENSPPYG00000002089	-	92	100.000	Pongo_abelii
ENSUAMG00000023560	UPF2	98	100.000	ENSPCAG00000000684	UPF2	92	98.611	Procavia_capensis
ENSUAMG00000023560	UPF2	100	97.824	ENSPCOG00000021656	UPF2	100	95.462	Propithecus_coquereli
ENSUAMG00000023560	UPF2	99	100.000	ENSPVAG00000017286	UPF2	92	100.000	Pteropus_vampyrus
ENSUAMG00000023560	UPF2	98	94.382	ENSPNYG00000017096	UPF2	87	94.382	Pundamilia_nyererei
ENSUAMG00000023560	UPF2	98	95.506	ENSPNAG00000009357	UPF2	87	95.506	Pygocentrus_nattereri
ENSUAMG00000023560	UPF2	98	100.000	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSUAMG00000023560	UPF2	99	100.000	ENSRBIG00000037780	UPF2	95	100.000	Rhinopithecus_bieti
ENSUAMG00000023560	UPF2	99	100.000	ENSRROG00000043547	UPF2	95	100.000	Rhinopithecus_roxellana
ENSUAMG00000023560	UPF2	99	100.000	ENSSBOG00000020012	UPF2	95	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000023560	UPF2	98	95.506	ENSSFOG00015023788	upf2	87	95.506	Scleropages_formosus
ENSUAMG00000023560	UPF2	88	95.506	ENSSMAG00000007637	UPF2	87	95.506	Scophthalmus_maximus
ENSUAMG00000023560	UPF2	99	94.382	ENSSDUG00000017244	UPF2	90	94.382	Seriola_dumerili
ENSUAMG00000023560	UPF2	95	94.382	ENSSLDG00000016866	UPF2	89	94.382	Seriola_lalandi_dorsalis
ENSUAMG00000023560	UPF2	99	99.306	ENSSARG00000008615	UPF2	92	99.306	Sorex_araneus
ENSUAMG00000023560	UPF2	98	100.000	ENSSPUG00000014544	UPF2	88	100.000	Sphenodon_punctatus
ENSUAMG00000023560	UPF2	66	100.000	ENSSSCG00000011117	-	92	100.000	Sus_scrofa
ENSUAMG00000023560	UPF2	98	100.000	ENSTGUG00000002163	-	92	97.902	Taeniopygia_guttata
ENSUAMG00000023560	UPF2	98	94.382	ENSTRUG00000007519	UPF2	86	94.382	Takifugu_rubripes
ENSUAMG00000023560	UPF2	92	98.214	ENSTBEG00000012679	UPF2	87	98.214	Tupaia_belangeri
ENSUAMG00000023560	UPF2	100	98.675	ENSTTRG00000016388	UPF2	94	99.306	Tursiops_truncatus
ENSUAMG00000023560	UPF2	99	100.000	ENSUMAG00000012953	UPF2	90	100.000	Ursus_maritimus
ENSUAMG00000023560	UPF2	93	96.774	ENSVPAG00000006763	UPF2	83	96.774	Vicugna_pacos
ENSUAMG00000023560	UPF2	100	99.432	ENSVVUG00000006166	UPF2	94	99.432	Vulpes_vulpes
ENSUAMG00000023560	UPF2	99	98.876	ENSXETG00000033103	UPF2	87	98.876	Xenopus_tropicalis
ENSUAMG00000023560	UPF2	89	93.258	ENSXCOG00000011604	UPF2	87	93.258	Xiphophorus_couchianus
ENSUAMG00000023560	UPF2	89	93.258	ENSXMAG00000017209	UPF2	87	93.258	Xiphophorus_maculatus