EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000024036 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 137783 bases
Position: chrLZNR01000608.1:498000-635782
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000031639	ResIII	PF04851.15	1.6e-08	1	1
ENSUAMP00000031627	ResIII	PF04851.15	8.8e-08	1	1
ENSUAMP00000031624	ResIII	PF04851.15	8.9e-08	1	1
ENSUAMP00000031623	ResIII	PF04851.15	9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000035269	CHD6-203	8085	-	ENSUAMP00000031627	2694 (aa)	-	-
ENSUAMT00000035280	CHD6-204	1392	-	ENSUAMP00000031638	463 (aa)	-	-
ENSUAMT00000035265	CHD6-201	8175	-	ENSUAMP00000031623	2724 (aa)	-	-
ENSUAMT00000035281	CHD6-205	1629	-	ENSUAMP00000031639	542 (aa)	-	-
ENSUAMT00000035266	CHD6-202	8157	-	ENSUAMP00000031624	2718 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000024036's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000024036's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000024036	CHD6	70	34.000	ENSUAMG00000003343	HELLS	72	37.851
ENSUAMG00000024036	CHD6	93	40.585	ENSUAMG00000016452	-	63	32.977
ENSUAMG00000024036	CHD6	71	41.026	ENSUAMG00000023495	SMARCA5	50	42.077
ENSUAMG00000024036	CHD6	71	40.816	ENSUAMG00000020201	SMARCA1	51	42.058
ENSUAMG00000024036	CHD6	59	63.273	ENSUAMG00000022706	CHD9	87	63.273
ENSUAMG00000024036	CHD6	68	32.854	ENSUAMG00000022262	SMARCAD1	54	36.154
ENSUAMG00000024036	CHD6	84	76.035	ENSUAMG00000004198	CHD8	98	69.284
ENSUAMG00000024036	CHD6	88	40.691	ENSUAMG00000024509	CHD5	57	40.404
ENSUAMG00000024036	CHD6	95	75.145	ENSUAMG00000025734	CHD7	75	65.217
ENSUAMG00000024036	CHD6	73	37.410	ENSUAMG00000024701	SMARCA2	59	32.836
ENSUAMG00000024036	CHD6	84	42.540	ENSUAMG00000005475	CHD3	53	35.163
ENSUAMG00000024036	CHD6	71	40.306	ENSUAMG00000021991	CHD1L	57	42.831

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000024036	CHD6	95	96.332	ENSG00000124177	CHD6	91	99.660	Homo_sapiens
ENSUAMG00000024036	CHD6	95	84.971	ENSAPOG00000013736	chd6	59	83.805	Acanthochromis_polyacanthus
ENSUAMG00000024036	CHD6	99	97.378	ENSAMEG00000009496	CHD6	99	97.378	Ailuropoda_melanoleuca
ENSUAMG00000024036	CHD6	95	84.586	ENSATEG00000005608	chd6	68	76.779	Anabas_testudineus
ENSUAMG00000024036	CHD6	95	92.085	ENSAPLG00000015592	CHD6	99	71.512	Anas_platyrhynchos
ENSUAMG00000024036	CHD6	94	83.041	ENSACAG00000006842	CHD6	99	67.204	Anolis_carolinensis
ENSUAMG00000024036	CHD6	100	97.985	ENSANAG00000037548	CHD6	100	97.985	Aotus_nancymaae
ENSUAMG00000024036	CHD6	94	86.160	ENSAMXG00000009576	chd6	77	68.940	Astyanax_mexicanus
ENSUAMG00000024036	CHD6	95	95.946	ENSBTAG00000005733	CHD6	100	87.656	Bos_taurus
ENSUAMG00000024036	CHD6	100	97.802	ENSCJAG00000017920	CHD6	100	97.802	Callithrix_jacchus
ENSUAMG00000024036	CHD6	99	95.199	ENSCAFG00000009236	CHD6	100	94.224	Canis_familiaris
ENSUAMG00000024036	CHD6	100	100.000	ENSCAFG00020012906	CHD6	100	100.000	Canis_lupus_dingo
ENSUAMG00000024036	CHD6	95	96.332	ENSCHIG00000017606	CHD6	100	88.081	Capra_hircus
ENSUAMG00000024036	CHD6	84	88.524	ENSTSYG00000014635	CHD6	100	89.225	Carlito_syrichta
ENSUAMG00000024036	CHD6	95	96.139	ENSCPOG00000015641	CHD6	99	89.143	Cavia_porcellus
ENSUAMG00000024036	CHD6	100	97.985	ENSCCAG00000036828	CHD6	100	97.985	Cebus_capucinus
ENSUAMG00000024036	CHD6	100	97.985	ENSCATG00000039248	CHD6	100	97.985	Cercocebus_atys
ENSUAMG00000024036	CHD6	95	95.946	ENSCLAG00000013743	CHD6	99	89.130	Chinchilla_lanigera
ENSUAMG00000024036	CHD6	95	96.332	ENSCSAG00000013997	CHD6	99	90.443	Chlorocebus_sabaeus
ENSUAMG00000024036	CHD6	95	89.768	ENSCHOG00000012647	CHD6	94	87.790	Choloepus_hoffmanni
ENSUAMG00000024036	CHD6	95	91.892	ENSCPBG00000019382	CHD6	99	72.434	Chrysemys_picta_bellii
ENSUAMG00000024036	CHD6	100	97.985	ENSCANG00000043435	CHD6	100	97.985	Colobus_angolensis_palliatus
ENSUAMG00000024036	CHD6	95	94.015	ENSCGRG00001002694	Chd6	99	87.925	Cricetulus_griseus_chok1gshd
ENSUAMG00000024036	CHD6	100	95.604	ENSCGRG00000006749	-	100	95.604	Cricetulus_griseus_crigri
ENSUAMG00000024036	CHD6	91	88.866	ENSDARG00000017244	chd6	80	71.150	Danio_rerio
ENSUAMG00000024036	CHD6	95	95.560	ENSDNOG00000004176	CHD6	99	89.077	Dasypus_novemcinctus
ENSUAMG00000024036	CHD6	100	97.431	ENSEASG00005023433	CHD6	100	97.431	Equus_asinus_asinus
ENSUAMG00000024036	CHD6	99	92.546	ENSECAG00000011761	CHD6	99	92.541	Equus_caballus
ENSUAMG00000024036	CHD6	94	84.990	ENSELUG00000012309	chd6	92	78.615	Esox_lucius
ENSUAMG00000024036	CHD6	99	94.018	ENSFCAG00000003572	CHD6	100	93.046	Felis_catus
ENSUAMG00000024036	CHD6	95	91.506	ENSFALG00000012563	CHD6	99	69.410	Ficedula_albicollis
ENSUAMG00000024036	CHD6	95	95.367	ENSFDAG00000013791	CHD6	99	89.254	Fukomys_damarensis
ENSUAMG00000024036	CHD6	89	82.510	ENSGMOG00000011715	chd6	83	68.709	Gadus_morhua
ENSUAMG00000024036	CHD6	91	81.818	ENSGACG00000000037	chd6	93	63.028	Gasterosteus_aculeatus
ENSUAMG00000024036	CHD6	62	93.713	ENSGAGG00000007475	-	79	93.878	Gopherus_agassizii
ENSUAMG00000024036	CHD6	100	97.985	ENSGGOG00000013123	CHD6	100	97.985	Gorilla_gorilla
ENSUAMG00000024036	CHD6	95	83.815	ENSHBUG00000014701	chd6	61	80.405	Haplochromis_burtoni
ENSUAMG00000024036	CHD6	95	95.560	ENSHGLG00000004548	CHD6	99	89.295	Heterocephalus_glaber_female
ENSUAMG00000024036	CHD6	95	95.560	ENSHGLG00100006401	CHD6	99	89.295	Heterocephalus_glaber_male
ENSUAMG00000024036	CHD6	94	85.380	ENSIPUG00000003692	chd6	75	74.194	Ictalurus_punctatus
ENSUAMG00000024036	CHD6	95	96.139	ENSSTOG00000013382	CHD6	99	89.956	Ictidomys_tridecemlineatus
ENSUAMG00000024036	CHD6	95	87.066	ENSLACG00000010881	CHD6	86	74.986	Latimeria_chalumnae
ENSUAMG00000024036	CHD6	94	86.745	ENSLOCG00000007386	chd6	89	73.656	Lepisosteus_oculatus
ENSUAMG00000024036	CHD6	95	95.753	ENSLAFG00000012144	CHD6	100	89.232	Loxodonta_africana
ENSUAMG00000024036	CHD6	100	97.985	ENSMFAG00000032830	CHD6	100	97.985	Macaca_fascicularis
ENSUAMG00000024036	CHD6	100	97.985	ENSMMUG00000020458	CHD6	100	97.985	Macaca_mulatta
ENSUAMG00000024036	CHD6	100	97.985	ENSMNEG00000040847	CHD6	100	97.985	Macaca_nemestrina
ENSUAMG00000024036	CHD6	100	97.985	ENSMLEG00000031965	CHD6	100	97.985	Mandrillus_leucophaeus
ENSUAMG00000024036	CHD6	95	84.200	ENSMAMG00000013111	chd6	63	74.230	Mastacembelus_armatus
ENSUAMG00000024036	CHD6	95	91.522	ENSMGAG00000001121	CHD6	100	71.017	Meleagris_gallopavo
ENSUAMG00000024036	CHD6	100	97.436	ENSMICG00000016641	CHD6	100	97.436	Microcebus_murinus
ENSUAMG00000024036	CHD6	96	93.846	ENSMOCG00000014004	-	97	94.779	Microtus_ochrogaster
ENSUAMG00000024036	CHD6	95	94.402	ENSMODG00000000720	-	99	79.562	Monodelphis_domestica
ENSUAMG00000024036	CHD6	95	93.629	MGP_CAROLIEiJ_G0024604	Chd6	99	94.378	Mus_caroli
ENSUAMG00000024036	CHD6	95	93.629	ENSMUSG00000057133	Chd6	99	94.293	Mus_musculus
ENSUAMG00000024036	CHD6	95	93.822	MGP_PahariEiJ_G0026048	Chd6	99	94.719	Mus_pahari
ENSUAMG00000024036	CHD6	95	93.629	MGP_SPRETEiJ_G0025526	Chd6	99	94.378	Mus_spretus
ENSUAMG00000024036	CHD6	99	94.438	ENSMPUG00000017695	CHD6	100	93.505	Mustela_putorius_furo
ENSUAMG00000024036	CHD6	95	95.753	ENSMLUG00000016247	CHD6	100	90.147	Myotis_lucifugus
ENSUAMG00000024036	CHD6	94	84.078	ENSNBRG00000013839	chd6	76	78.530	Neolamprologus_brichardi
ENSUAMG00000024036	CHD6	99	89.213	ENSNLEG00000006496	CHD6	99	89.225	Nomascus_leucogenys
ENSUAMG00000024036	CHD6	99	85.793	ENSOPRG00000013376	-	99	85.783	Ochotona_princeps
ENSUAMG00000024036	CHD6	95	84.008	ENSONIG00000000393	chd6	86	73.214	Oreochromis_niloticus
ENSUAMG00000024036	CHD6	95	92.085	ENSOANG00000014347	CHD6	99	69.345	Ornithorhynchus_anatinus
ENSUAMG00000024036	CHD6	95	96.332	ENSOCUG00000012394	CHD6	99	88.552	Oryctolagus_cuniculus
ENSUAMG00000024036	CHD6	96	83.748	ENSORLG00020021891	chd6	99	83.748	Oryzias_latipes_hni
ENSUAMG00000024036	CHD6	95	95.946	ENSOGAG00000002427	CHD6	99	88.774	Otolemur_garnettii
ENSUAMG00000024036	CHD6	95	96.332	ENSOARG00000002597	CHD6	99	86.199	Ovis_aries
ENSUAMG00000024036	CHD6	99	94.202	ENSPPRG00000014756	CHD6	100	93.230	Panthera_pardus
ENSUAMG00000024036	CHD6	99	94.055	ENSPTIG00000011094	CHD6	100	93.083	Panthera_tigris_altaica
ENSUAMG00000024036	CHD6	100	97.985	ENSPTRG00000013504	CHD6	99	97.985	Pan_troglodytes
ENSUAMG00000024036	CHD6	100	97.802	ENSPANG00000025554	CHD6	100	97.802	Papio_anubis
ENSUAMG00000024036	CHD6	94	86.745	ENSPKIG00000005578	chd6	79	71.820	Paramormyrops_kingsleyae
ENSUAMG00000024036	CHD6	95	84.749	ENSPMGG00000014877	chd6	88	74.618	Periophthalmus_magnuspinnatus
ENSUAMG00000024036	CHD6	100	95.604	ENSPEMG00000014672	-	100	95.604	Peromyscus_maniculatus_bairdii
ENSUAMG00000024036	CHD6	95	94.402	ENSPCIG00000028037	CHD6	99	79.322	Phascolarctos_cinereus
ENSUAMG00000024036	CHD6	95	83.815	ENSPLAG00000003128	chd6	62	78.186	Poecilia_latipinna
ENSUAMG00000024036	CHD6	96	83.333	ENSPREG00000022653	chd6	99	86.630	Poecilia_reticulata
ENSUAMG00000024036	CHD6	95	96.332	ENSPPYG00000011016	CHD6	99	90.778	Pongo_abelii
ENSUAMG00000024036	CHD6	100	97.985	ENSPCOG00000001089	CHD6	100	97.985	Propithecus_coquereli
ENSUAMG00000024036	CHD6	95	83.815	ENSPNYG00000022516	chd6	78	73.698	Pundamilia_nyererei
ENSUAMG00000024036	CHD6	94	86.745	ENSPNAG00000012825	chd6	76	73.290	Pygocentrus_nattereri
ENSUAMG00000024036	CHD6	95	93.436	ENSRNOG00000016744	Chd6	100	85.257	Rattus_norvegicus
ENSUAMG00000024036	CHD6	100	97.985	ENSSBOG00000022089	CHD6	99	97.985	Saimiri_boliviensis_boliviensis
ENSUAMG00000024036	CHD6	95	94.208	ENSSHAG00000017072	CHD6	99	79.153	Sarcophilus_harrisii
ENSUAMG00000024036	CHD6	94	86.550	ENSSFOG00015012920	chd6	81	72.554	Scleropages_formosus
ENSUAMG00000024036	CHD6	85	99.563	ENSSARG00000002615	-	56	100.000	Sorex_araneus
ENSUAMG00000024036	CHD6	95	96.139	ENSSSCG00000007360	CHD6	99	91.020	Sus_scrofa
ENSUAMG00000024036	CHD6	95	91.892	ENSTGUG00000003179	CHD6	99	72.448	Taeniopygia_guttata
ENSUAMG00000024036	CHD6	95	82.852	ENSTNIG00000017487	chd6	57	75.892	Tetraodon_nigroviridis
ENSUAMG00000024036	CHD6	95	94.015	ENSTTRG00000013438	CHD6	100	86.811	Tursiops_truncatus
ENSUAMG00000024036	CHD6	100	100.000	ENSUMAG00000002017	CHD6	100	100.000	Ursus_maritimus
ENSUAMG00000024036	CHD6	92	91.943	ENSVPAG00000007941	CHD6	93	91.943	Vicugna_pacos
ENSUAMG00000024036	CHD6	99	95.310	ENSVVUG00000029164	CHD6	100	94.334	Vulpes_vulpes
ENSUAMG00000024036	CHD6	95	65.637	ENSXETG00000021445	chd6	91	68.531	Xenopus_tropicalis