EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000024209 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 38213 bases
Position: chrLZNR01011207.1:115405-153617
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000031658	CMS1	PF14617.6	1.1e-32	1	1
ENSUAMP00000031662	CMS1	PF14617.6	1.2e-32	1	1
ENSUAMP00000031661	CMS1	PF14617.6	1.7e-32	1	1
ENSUAMP00000031658	DEAD	PF00270.29	2.8e-06	1	1
ENSUAMP00000031662	DEAD	PF00270.29	3.3e-06	1	1
ENSUAMP00000031661	DEAD	PF00270.29	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000035306	CMSS1-203	723	-	ENSUAMP00000031662	240 (aa)	-	-
ENSUAMT00000035305	CMSS1-202	852	-	ENSUAMP00000031661	283 (aa)	-	-
ENSUAMT00000035302	CMSS1-201	1037	-	ENSUAMP00000031658	223 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000024209's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000024209's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000024209	CMSS1	100	93.722	ENSG00000184220	CMSS1	99	95.062	Homo_sapiens
ENSUAMG00000024209	CMSS1	91	64.851	ENSAPOG00000010604	cmss1	82	64.851	Acanthochromis_polyacanthus
ENSUAMG00000024209	CMSS1	100	98.661	ENSAMEG00000004092	CMSS1	100	97.683	Ailuropoda_melanoleuca
ENSUAMG00000024209	CMSS1	91	54.950	ENSACIG00000021854	cmss1	91	52.066	Amphilophus_citrinellus
ENSUAMG00000024209	CMSS1	91	64.851	ENSAOCG00000013361	cmss1	70	64.851	Amphiprion_ocellaris
ENSUAMG00000024209	CMSS1	91	64.851	ENSAPEG00000005829	cmss1	70	64.851	Amphiprion_percula
ENSUAMG00000024209	CMSS1	92	65.049	ENSATEG00000008209	cmss1	99	55.311	Anabas_testudineus
ENSUAMG00000024209	CMSS1	100	68.304	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
ENSUAMG00000024209	CMSS1	95	68.240	ENSACAG00000011065	CMSS1	97	63.636	Anolis_carolinensis
ENSUAMG00000024209	CMSS1	100	93.274	ENSANAG00000023565	CMSS1	99	90.000	Aotus_nancymaae
ENSUAMG00000024209	CMSS1	91	61.881	ENSACLG00000027294	cmss1	69	61.881	Astatotilapia_calliptera
ENSUAMG00000024209	CMSS1	90	55.000	ENSAMXG00000002046	cmss1	82	53.086	Astyanax_mexicanus
ENSUAMG00000024209	CMSS1	100	91.928	ENSBTAG00000013663	CMSS1	97	86.496	Bos_taurus
ENSUAMG00000024209	CMSS1	100	92.825	ENSCJAG00000000610	CMSS1	99	89.575	Callithrix_jacchus
ENSUAMG00000024209	CMSS1	100	96.861	ENSCAFG00000009230	CMSS1	94	94.595	Canis_familiaris
ENSUAMG00000024209	CMSS1	100	96.861	ENSCAFG00020009464	-	94	94.186	Canis_lupus_dingo
ENSUAMG00000024209	CMSS1	97	91.244	ENSCAFG00020024156	-	77	84.146	Canis_lupus_dingo
ENSUAMG00000024209	CMSS1	100	91.480	ENSCHIG00000013003	CMSS1	93	89.494	Capra_hircus
ENSUAMG00000024209	CMSS1	100	92.377	ENSTSYG00000009266	CMSS1	99	89.615	Carlito_syrichta
ENSUAMG00000024209	CMSS1	100	73.362	ENSCAPG00000013584	CMSS1	100	72.926	Cavia_aperea
ENSUAMG00000024209	CMSS1	100	92.377	ENSCPOG00000014680	CMSS1	97	84.249	Cavia_porcellus
ENSUAMG00000024209	CMSS1	100	94.170	ENSCCAG00000034685	CMSS1	99	91.154	Cebus_capucinus
ENSUAMG00000024209	CMSS1	100	94.170	ENSCATG00000031980	CMSS1	99	91.120	Cercocebus_atys
ENSUAMG00000024209	CMSS1	100	95.067	ENSCLAG00000011241	CMSS1	98	95.197	Chinchilla_lanigera
ENSUAMG00000024209	CMSS1	100	94.170	ENSCSAG00000006024	CMSS1	99	92.213	Chlorocebus_sabaeus
ENSUAMG00000024209	CMSS1	100	70.404	ENSCHOG00000012098	CMSS1	97	68.864	Choloepus_hoffmanni
ENSUAMG00000024209	CMSS1	87	39.500	ENSCING00000014848	-	100	40.642	Ciona_intestinalis
ENSUAMG00000024209	CMSS1	56	40.476	ENSCSAVG00000002309	-	99	40.476	Ciona_savignyi
ENSUAMG00000024209	CMSS1	100	93.722	ENSCANG00000031337	CMSS1	99	90.734	Colobus_angolensis_palliatus
ENSUAMG00000024209	CMSS1	100	85.650	ENSCGRG00001014305	Cmss1	97	79.121	Cricetulus_griseus_chok1gshd
ENSUAMG00000024209	CMSS1	100	86.099	ENSCGRG00000006722	Cmss1	99	83.137	Cricetulus_griseus_crigri
ENSUAMG00000024209	CMSS1	91	63.366	ENSCSEG00000004958	cmss1	69	63.366	Cynoglossus_semilaevis
ENSUAMG00000024209	CMSS1	91	61.881	ENSCVAG00000005039	cmss1	88	55.731	Cyprinodon_variegatus
ENSUAMG00000024209	CMSS1	91	55.446	ENSDARG00000112579	cmss1	84	50.813	Danio_rerio
ENSUAMG00000024209	CMSS1	100	91.928	ENSDNOG00000040418	CMSS1	92	88.077	Dasypus_novemcinctus
ENSUAMG00000024209	CMSS1	100	92.825	ENSDORG00000010461	Cmss1	97	86.131	Dipodomys_ordii
ENSUAMG00000024209	CMSS1	59	50.758	ENSEBUG00000002156	-	96	50.758	Eptatretus_burgeri
ENSUAMG00000024209	CMSS1	100	93.722	ENSEASG00005010966	CMSS1	99	93.607	Equus_asinus_asinus
ENSUAMG00000024209	CMSS1	100	92.825	ENSECAG00000015662	CMSS1	99	92.478	Equus_caballus
ENSUAMG00000024209	CMSS1	95	61.842	ENSEEUG00000007624	-	82	61.842	Erinaceus_europaeus
ENSUAMG00000024209	CMSS1	91	62.871	ENSELUG00000019459	cmss1	80	58.750	Esox_lucius
ENSUAMG00000024209	CMSS1	100	97.309	ENSFCAG00000044577	CMSS1	97	92.336	Felis_catus
ENSUAMG00000024209	CMSS1	100	65.022	ENSFALG00000005816	CMSS1	97	65.502	Ficedula_albicollis
ENSUAMG00000024209	CMSS1	100	91.928	ENSFDAG00000012577	CMSS1	100	92.105	Fukomys_damarensis
ENSUAMG00000024209	CMSS1	95	61.472	ENSFHEG00000012008	cmss1	95	61.472	Fundulus_heteroclitus
ENSUAMG00000024209	CMSS1	91	62.871	ENSGMOG00000016729	cmss1	72	62.871	Gadus_morhua
ENSUAMG00000024209	CMSS1	100	69.058	ENSGALG00000015267	CMSS1	100	64.368	Gallus_gallus
ENSUAMG00000024209	CMSS1	93	63.768	ENSGAFG00000021217	cmss1	77	63.861	Gambusia_affinis
ENSUAMG00000024209	CMSS1	91	56.931	ENSGACG00000002798	cmss1	72	56.931	Gasterosteus_aculeatus
ENSUAMG00000024209	CMSS1	100	72.197	ENSGAGG00000019861	CMSS1	96	68.952	Gopherus_agassizii
ENSUAMG00000024209	CMSS1	100	94.170	ENSGGOG00000014125	CMSS1	99	91.120	Gorilla_gorilla
ENSUAMG00000024209	CMSS1	91	61.881	ENSHBUG00000008431	cmss1	71	61.881	Haplochromis_burtoni
ENSUAMG00000024209	CMSS1	100	93.722	ENSHGLG00000019481	CMSS1	100	88.538	Heterocephalus_glaber_female
ENSUAMG00000024209	CMSS1	100	93.722	ENSHGLG00100010314	CMSS1	100	88.327	Heterocephalus_glaber_male
ENSUAMG00000024209	CMSS1	98	64.384	ENSHCOG00000003222	cmss1	74	64.384	Hippocampus_comes
ENSUAMG00000024209	CMSS1	99	56.109	ENSIPUG00000011591	cmss1	76	56.109	Ictalurus_punctatus
ENSUAMG00000024209	CMSS1	100	94.170	ENSSTOG00000019366	CMSS1	97	89.051	Ictidomys_tridecemlineatus
ENSUAMG00000024209	CMSS1	100	91.031	ENSJJAG00000014894	Cmss1	90	93.069	Jaculus_jaculus
ENSUAMG00000024209	CMSS1	91	54.950	ENSKMAG00000002390	cmss1	81	54.950	Kryptolebias_marmoratus
ENSUAMG00000024209	CMSS1	91	58.621	ENSLBEG00000006298	cmss1	83	58.621	Labrus_bergylta
ENSUAMG00000024209	CMSS1	98	66.210	ENSLACG00000009293	CMSS1	100	66.087	Latimeria_chalumnae
ENSUAMG00000024209	CMSS1	94	58.150	ENSLOCG00000009391	cmss1	97	51.799	Lepisosteus_oculatus
ENSUAMG00000024209	CMSS1	100	92.377	ENSLAFG00000017509	CMSS1	100	92.544	Loxodonta_africana
ENSUAMG00000024209	CMSS1	100	94.619	ENSMFAG00000045006	CMSS1	99	91.506	Macaca_fascicularis
ENSUAMG00000024209	CMSS1	100	94.170	ENSMMUG00000002939	CMSS1	98	93.636	Macaca_mulatta
ENSUAMG00000024209	CMSS1	100	94.170	ENSMNEG00000031315	CMSS1	99	91.120	Macaca_nemestrina
ENSUAMG00000024209	CMSS1	100	93.722	ENSMLEG00000033660	CMSS1	99	90.734	Mandrillus_leucophaeus
ENSUAMG00000024209	CMSS1	91	63.861	ENSMAMG00000017176	cmss1	97	52.962	Mastacembelus_armatus
ENSUAMG00000024209	CMSS1	91	61.881	ENSMZEG00005021886	cmss1	69	61.881	Maylandia_zebra
ENSUAMG00000024209	CMSS1	100	68.161	ENSMGAG00000014360	CMSS1	100	68.421	Meleagris_gallopavo
ENSUAMG00000024209	CMSS1	100	57.778	ENSMAUG00000020609	Cmss1	96	56.727	Mesocricetus_auratus
ENSUAMG00000024209	CMSS1	100	94.619	ENSMICG00000048977	CMSS1	99	91.085	Microcebus_murinus
ENSUAMG00000024209	CMSS1	100	86.099	ENSMOCG00000021937	Cmss1	97	80.220	Microtus_ochrogaster
ENSUAMG00000024209	CMSS1	91	62.376	ENSMMOG00000019794	cmss1	84	62.376	Mola_mola
ENSUAMG00000024209	CMSS1	100	80.269	ENSMODG00000002275	CMSS1	97	74.713	Monodelphis_domestica
ENSUAMG00000024209	CMSS1	91	64.851	ENSMALG00000004250	cmss1	69	64.851	Monopterus_albus
ENSUAMG00000024209	CMSS1	100	85.268	MGP_CAROLIEiJ_G0020824	Cmss1	97	79.927	Mus_caroli
ENSUAMG00000024209	CMSS1	100	86.607	ENSMUSG00000022748	Cmss1	97	81.022	Mus_musculus
ENSUAMG00000024209	CMSS1	100	86.161	MGP_PahariEiJ_G0016524	Cmss1	97	79.197	Mus_pahari
ENSUAMG00000024209	CMSS1	100	86.607	MGP_SPRETEiJ_G0021724	Cmss1	97	80.657	Mus_spretus
ENSUAMG00000024209	CMSS1	99	98.198	ENSMPUG00000011324	CMSS1	99	96.124	Mustela_putorius_furo
ENSUAMG00000024209	CMSS1	100	93.778	ENSMLUG00000001131	CMSS1	99	91.188	Myotis_lucifugus
ENSUAMG00000024209	CMSS1	100	89.686	ENSNGAG00000020316	Cmss1	97	83.577	Nannospalax_galili
ENSUAMG00000024209	CMSS1	91	61.386	ENSNBRG00000003095	cmss1	83	56.198	Neolamprologus_brichardi
ENSUAMG00000024209	CMSS1	100	95.516	ENSNLEG00000034172	CMSS1	99	92.664	Nomascus_leucogenys
ENSUAMG00000024209	CMSS1	100	67.265	ENSMEUG00000014505	CMSS1	100	67.982	Notamacropus_eugenii
ENSUAMG00000024209	CMSS1	100	94.170	ENSOPRG00000002986	CMSS1	97	87.912	Ochotona_princeps
ENSUAMG00000024209	CMSS1	100	92.825	ENSODEG00000005226	-	97	85.714	Octodon_degus
ENSUAMG00000024209	CMSS1	100	91.031	ENSODEG00000003558	-	97	80.882	Octodon_degus
ENSUAMG00000024209	CMSS1	98	82.110	ENSODEG00000009446	-	97	70.330	Octodon_degus
ENSUAMG00000024209	CMSS1	100	80.269	ENSODEG00000001853	-	97	75.092	Octodon_degus
ENSUAMG00000024209	CMSS1	91	61.881	ENSONIG00000006678	cmss1	77	61.881	Oreochromis_niloticus
ENSUAMG00000024209	CMSS1	100	76.682	ENSOANG00000007529	CMSS1	100	75.536	Ornithorhynchus_anatinus
ENSUAMG00000024209	CMSS1	100	93.722	ENSOCUG00000025366	CMSS1	99	87.636	Oryctolagus_cuniculus
ENSUAMG00000024209	CMSS1	95	61.739	ENSORLG00000020340	cmss1	97	54.093	Oryzias_latipes
ENSUAMG00000024209	CMSS1	95	57.820	ENSORLG00020012235	cmss1	85	58.416	Oryzias_latipes_hni
ENSUAMG00000024209	CMSS1	91	57.921	ENSORLG00015015551	cmss1	75	57.921	Oryzias_latipes_hsok
ENSUAMG00000024209	CMSS1	95	62.174	ENSOMEG00000012555	cmss1	80	61.739	Oryzias_melastigma
ENSUAMG00000024209	CMSS1	100	93.274	ENSOGAG00000002045	CMSS1	100	93.421	Otolemur_garnettii
ENSUAMG00000024209	CMSS1	100	91.518	ENSOARG00000017899	CMSS1	91	87.594	Ovis_aries
ENSUAMG00000024209	CMSS1	100	94.170	ENSPPAG00000038515	CMSS1	95	91.860	Pan_paniscus
ENSUAMG00000024209	CMSS1	100	97.758	ENSPPRG00000016767	CMSS1	97	92.336	Panthera_pardus
ENSUAMG00000024209	CMSS1	100	97.309	ENSPTIG00000018274	CMSS1	97	91.971	Panthera_tigris_altaica
ENSUAMG00000024209	CMSS1	100	93.722	ENSPTRG00000015157	CMSS1	99	91.803	Pan_troglodytes
ENSUAMG00000024209	CMSS1	100	94.170	ENSPANG00000019980	CMSS1	99	88.372	Papio_anubis
ENSUAMG00000024209	CMSS1	91	64.851	ENSPKIG00000012609	cmss1	96	57.143	Paramormyrops_kingsleyae
ENSUAMG00000024209	CMSS1	100	72.646	ENSPSIG00000003849	CMSS1	100	72.926	Pelodiscus_sinensis
ENSUAMG00000024209	CMSS1	91	62.069	ENSPMGG00000010286	cmss1	87	62.069	Periophthalmus_magnuspinnatus
ENSUAMG00000024209	CMSS1	100	87.444	ENSPEMG00000016384	Cmss1	97	81.818	Peromyscus_maniculatus_bairdii
ENSUAMG00000024209	CMSS1	91	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
ENSUAMG00000024209	CMSS1	100	78.475	ENSPCIG00000015656	CMSS1	98	74.615	Phascolarctos_cinereus
ENSUAMG00000024209	CMSS1	91	63.366	ENSPFOG00000016849	cmss1	71	63.366	Poecilia_formosa
ENSUAMG00000024209	CMSS1	91	62.871	ENSPLAG00000008323	cmss1	71	62.871	Poecilia_latipinna
ENSUAMG00000024209	CMSS1	91	63.366	ENSPMEG00000021020	cmss1	70	63.366	Poecilia_mexicana
ENSUAMG00000024209	CMSS1	95	59.227	ENSPREG00000007618	cmss1	82	57.917	Poecilia_reticulata
ENSUAMG00000024209	CMSS1	100	93.274	ENSPPYG00000013606	CMSS1	95	90.698	Pongo_abelii
ENSUAMG00000024209	CMSS1	100	95.067	ENSPCOG00000020035	CMSS1	99	91.538	Propithecus_coquereli
ENSUAMG00000024209	CMSS1	100	80.269	ENSPVAG00000017031	CMSS1	97	77.372	Pteropus_vampyrus
ENSUAMG00000024209	CMSS1	79	63.636	ENSPNYG00000013428	cmss1	65	63.636	Pundamilia_nyererei
ENSUAMG00000024209	CMSS1	95	54.113	ENSPNAG00000007912	cmss1	82	53.498	Pygocentrus_nattereri
ENSUAMG00000024209	CMSS1	91	89.604	ENSRNOG00000027888	Cmss1	100	82.308	Rattus_norvegicus
ENSUAMG00000024209	CMSS1	100	93.722	ENSRBIG00000037931	CMSS1	99	89.961	Rhinopithecus_bieti
ENSUAMG00000024209	CMSS1	100	93.722	ENSRROG00000042910	CMSS1	99	89.961	Rhinopithecus_roxellana
ENSUAMG00000024209	CMSS1	99	93.243	ENSSBOG00000030980	CMSS1	99	90.385	Saimiri_boliviensis_boliviensis
ENSUAMG00000024209	CMSS1	95	79.039	ENSSHAG00000009321	CMSS1	99	75.299	Sarcophilus_harrisii
ENSUAMG00000024209	CMSS1	94	61.739	ENSSFOG00015001509	cmss1	81	61.864	Scleropages_formosus
ENSUAMG00000024209	CMSS1	91	64.356	ENSSMAG00000001653	cmss1	69	64.356	Scophthalmus_maximus
ENSUAMG00000024209	CMSS1	95	60.776	ENSSDUG00000007719	cmss1	97	54.355	Seriola_dumerili
ENSUAMG00000024209	CMSS1	93	64.251	ENSSLDG00000012300	cmss1	93	54.222	Seriola_lalandi_dorsalis
ENSUAMG00000024209	CMSS1	100	75.336	ENSSARG00000003584	CMSS1	97	72.161	Sorex_araneus
ENSUAMG00000024209	CMSS1	99	71.041	ENSSPUG00000003865	CMSS1	100	71.239	Sphenodon_punctatus
ENSUAMG00000024209	CMSS1	92	64.563	ENSSPAG00000019182	cmss1	63	64.851	Stegastes_partitus
ENSUAMG00000024209	CMSS1	100	95.067	ENSSSCG00000011970	CMSS1	97	89.744	Sus_scrofa
ENSUAMG00000024209	CMSS1	100	65.471	ENSTGUG00000013635	CMSS1	100	65.939	Taeniopygia_guttata
ENSUAMG00000024209	CMSS1	91	61.881	ENSTRUG00000015265	cmss1	72	61.881	Takifugu_rubripes
ENSUAMG00000024209	CMSS1	91	55.941	ENSTNIG00000002880	cmss1	86	51.271	Tetraodon_nigroviridis
ENSUAMG00000024209	CMSS1	100	70.404	ENSTBEG00000016722	CMSS1	81	70.614	Tupaia_belangeri
ENSUAMG00000024209	CMSS1	100	91.480	ENSTTRG00000001562	CMSS1	97	86.496	Tursiops_truncatus
ENSUAMG00000024209	CMSS1	100	99.103	ENSUMAG00000001983	CMSS1	99	99.222	Ursus_maritimus
ENSUAMG00000024209	CMSS1	100	76.682	ENSVPAG00000000263	CMSS1	82	77.193	Vicugna_pacos
ENSUAMG00000024209	CMSS1	100	96.413	ENSVVUG00000021647	-	100	95.122	Vulpes_vulpes
ENSUAMG00000024209	CMSS1	97	96.313	ENSVVUG00000007776	-	89	93.805	Vulpes_vulpes
ENSUAMG00000024209	CMSS1	95	62.338	ENSXETG00000011858	cmss1	97	54.770	Xenopus_tropicalis
ENSUAMG00000024209	CMSS1	93	62.981	ENSXCOG00000018724	cmss1	69	63.366	Xiphophorus_couchianus
ENSUAMG00000024209	CMSS1	93	62.981	ENSXMAG00000011243	cmss1	76	63.366	Xiphophorus_maculatus