EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000024633 (Gene tree)
Gene ID: -
Gene Symbol: RBFOX1
Alias: A2BP1|FOX-1|HRNBP1
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 338295 bases
Position: chrLZNR01002671.1:174811-513105
Accession: 18222
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000032237	Fox-1_C	PF12414.8	9.6e-24	1	1
ENSUAMP00000032236	Fox-1_C	PF12414.8	1.3e-22	1	1
ENSUAMP00000032230	Fox-1_C	PF12414.8	3.2e-21	1	2
ENSUAMP00000032230	Fox-1_C	PF12414.8	3.2e-21	2	2
ENSUAMP00000032229	Fox-1_C	PF12414.8	3.8e-20	1	1
ENSUAMP00000032231	Fox-1_C	PF12414.8	5.6e-20	1	1
ENSUAMP00000032237	RRM_1	PF00076.22	2.8e-18	1	1
ENSUAMP00000032230	RRM_1	PF00076.22	2.9e-18	1	1
ENSUAMP00000032229	RRM_1	PF00076.22	3.3e-18	1	1
ENSUAMP00000032236	RRM_1	PF00076.22	3.4e-18	1	1
ENSUAMP00000032231	RRM_1	PF00076.22	4.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000035930	RBFOX1-203	1293	-	ENSUAMP00000032231	430 (aa)	-	-
ENSUAMT00000035928	RBFOX1-201	1137	-	ENSUAMP00000032229	378 (aa)	-	-
ENSUAMT00000035929	RBFOX1-202	1056	-	ENSUAMP00000032230	351 (aa)	-	-
ENSUAMT00000035935	RBFOX1-204	1134	-	ENSUAMP00000032236	377 (aa)	-	-
ENSUAMT00000035936	RBFOX1-205	1029	-	ENSUAMP00000032237	342 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000024633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000024633's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000024633	RBFOX1	87	62.466	ENSUAMG00000010612	RBFOX2	92	60.989
ENSUAMG00000024633	RBFOX1	84	65.696	ENSUAMG00000004668	RBFOX3	100	66.358

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000024633	RBFOX1	99	94.430	ENSG00000078328	RBFOX1	97	99.608	Homo_sapiens
ENSUAMG00000024633	RBFOX1	100	73.936	ENSAPOG00000003197	rbfox1	100	69.880	Acanthochromis_polyacanthus
ENSUAMG00000024633	RBFOX1	71	97.189	ENSAMEG00000008605	RBFOX1	100	97.200	Ailuropoda_melanoleuca
ENSUAMG00000024633	RBFOX1	71	77.528	ENSAOCG00000008283	rbfox1	91	77.154	Amphiprion_ocellaris
ENSUAMG00000024633	RBFOX1	100	70.752	ENSAPEG00000010636	rbfox1	100	75.207	Amphiprion_percula
ENSUAMG00000024633	RBFOX1	75	73.592	ENSATEG00000007513	rbfox1	92	74.908	Anabas_testudineus
ENSUAMG00000024633	RBFOX1	99	88.747	ENSAPLG00000013263	RBFOX1	97	88.689	Anas_platyrhynchos
ENSUAMG00000024633	RBFOX1	100	81.481	ENSACAG00000004013	RBFOX1	98	81.633	Anolis_carolinensis
ENSUAMG00000024633	RBFOX1	100	96.042	ENSANAG00000029527	RBFOX1	98	98.580	Aotus_nancymaae
ENSUAMG00000024633	RBFOX1	64	87.611	ENSAMXG00000002431	rbfox1	66	87.611	Astyanax_mexicanus
ENSUAMG00000024633	RBFOX1	97	94.010	ENSBTAG00000007210	RBFOX1	98	93.478	Bos_taurus
ENSUAMG00000024633	RBFOX1	99	96.042	ENSCJAG00000017351	RBFOX1	98	96.042	Callithrix_jacchus
ENSUAMG00000024633	RBFOX1	99	95.190	ENSCAFG00000019082	RBFOX1	100	95.190	Canis_familiaris
ENSUAMG00000024633	RBFOX1	100	90.212	ENSCAFG00020024881	RBFOX1	100	90.476	Canis_lupus_dingo
ENSUAMG00000024633	RBFOX1	99	94.430	ENSCHIG00000023549	RBFOX1	100	94.430	Capra_hircus
ENSUAMG00000024633	RBFOX1	97	98.361	ENSTSYG00000005334	RBFOX1	97	98.361	Carlito_syrichta
ENSUAMG00000024633	RBFOX1	97	93.995	ENSCAPG00000017669	RBFOX1	99	93.995	Cavia_aperea
ENSUAMG00000024633	RBFOX1	100	92.132	ENSCPOG00000011314	RBFOX1	100	92.132	Cavia_porcellus
ENSUAMG00000024633	RBFOX1	97	94.010	ENSCCAG00000023031	RBFOX1	97	95.181	Cebus_capucinus
ENSUAMG00000024633	RBFOX1	100	94.192	ENSCATG00000033816	RBFOX1	98	98.580	Cercocebus_atys
ENSUAMG00000024633	RBFOX1	99	93.147	ENSCLAG00000012761	RBFOX1	100	93.147	Chinchilla_lanigera
ENSUAMG00000024633	RBFOX1	92	94.809	ENSCSAG00000008739	RBFOX1	98	94.022	Chlorocebus_sabaeus
ENSUAMG00000024633	RBFOX1	82	96.923	ENSCHOG00000012843	RBFOX1	74	96.923	Choloepus_hoffmanni
ENSUAMG00000024633	RBFOX1	100	88.101	ENSCPBG00000026626	RBFOX1	98	88.315	Chrysemys_picta_bellii
ENSUAMG00000024633	RBFOX1	97	94.531	ENSCANG00000033125	RBFOX1	92	94.531	Colobus_angolensis_palliatus
ENSUAMG00000024633	RBFOX1	100	91.436	ENSCGRG00001013729	Rbfox1	100	91.436	Cricetulus_griseus_chok1gshd
ENSUAMG00000024633	RBFOX1	100	91.436	ENSCGRG00000003272	Rbfox1	100	91.436	Cricetulus_griseus_crigri
ENSUAMG00000024633	RBFOX1	100	67.546	ENSCSEG00000008840	rbfox1	100	66.755	Cynoglossus_semilaevis
ENSUAMG00000024633	RBFOX1	100	78.333	ENSDARG00000014746	rbfox1	100	87.317	Danio_rerio
ENSUAMG00000024633	RBFOX1	97	94.256	ENSDNOG00000043612	RBFOX1	92	94.256	Dasypus_novemcinctus
ENSUAMG00000024633	RBFOX1	100	89.421	ENSDORG00000010024	Rbfox1	98	89.421	Dipodomys_ordii
ENSUAMG00000024633	RBFOX1	97	72.656	ENSETEG00000003771	RBFOX1	92	71.615	Echinops_telfairi
ENSUAMG00000024633	RBFOX1	100	94.444	ENSEASG00005011599	RBFOX1	100	94.937	Equus_asinus_asinus
ENSUAMG00000024633	RBFOX1	100	94.167	ENSECAG00000012667	RBFOX1	100	94.684	Equus_caballus
ENSUAMG00000024633	RBFOX1	82	70.423	ENSELUG00000013096	rbfox1	94	70.130	Esox_lucius
ENSUAMG00000024633	RBFOX1	100	94.697	ENSFCAG00000025322	RBFOX1	98	94.022	Felis_catus
ENSUAMG00000024633	RBFOX1	81	89.474	ENSFALG00000004027	RBFOX1	97	88.545	Ficedula_albicollis
ENSUAMG00000024633	RBFOX1	100	92.191	ENSFDAG00000007388	RBFOX1	100	92.191	Fukomys_damarensis
ENSUAMG00000024633	RBFOX1	99	87.949	ENSGALG00000034325	RBFOX1	100	88.654	Gallus_gallus
ENSUAMG00000024633	RBFOX1	99	88.718	ENSGAGG00000023681	RBFOX1	100	89.390	Gopherus_agassizii
ENSUAMG00000024633	RBFOX1	100	96.570	ENSGGOG00000016871	-	100	96.570	Gorilla_gorilla
ENSUAMG00000024633	RBFOX1	99	93.401	ENSHGLG00000016944	RBFOX1	100	93.401	Heterocephalus_glaber_female
ENSUAMG00000024633	RBFOX1	99	93.401	ENSHGLG00100003272	RBFOX1	100	93.401	Heterocephalus_glaber_male
ENSUAMG00000024633	RBFOX1	88	71.429	ENSHCOG00000016419	rbfox1	91	70.497	Hippocampus_comes
ENSUAMG00000024633	RBFOX1	100	84.211	ENSIPUG00000015215	rbfox1	100	79.387	Ictalurus_punctatus
ENSUAMG00000024633	RBFOX1	100	93.909	ENSSTOG00000000322	RBFOX1	100	93.909	Ictidomys_tridecemlineatus
ENSUAMG00000024633	RBFOX1	100	88.665	ENSJJAG00000002575	Rbfox1	100	87.657	Jaculus_jaculus
ENSUAMG00000024633	RBFOX1	99	75.853	ENSLBEG00000014659	rbfox1	98	75.853	Labrus_bergylta
ENSUAMG00000024633	RBFOX1	97	82.857	ENSLOCG00000006675	rbfox1	97	82.078	Lepisosteus_oculatus
ENSUAMG00000024633	RBFOX1	77	93.506	ENSLAFG00000011480	RBFOX1	100	93.506	Loxodonta_africana
ENSUAMG00000024633	RBFOX1	100	96.817	ENSMFAG00000036447	RBFOX1	97	96.817	Macaca_fascicularis
ENSUAMG00000024633	RBFOX1	97	94.517	ENSMMUG00000003458	RBFOX1	99	94.550	Macaca_mulatta
ENSUAMG00000024633	RBFOX1	100	94.177	ENSMNEG00000032034	RBFOX1	98	94.940	Macaca_nemestrina
ENSUAMG00000024633	RBFOX1	97	94.531	ENSMLEG00000015382	RBFOX1	93	95.422	Mandrillus_leucophaeus
ENSUAMG00000024633	RBFOX1	100	71.390	ENSMAMG00000003142	rbfox1	100	71.658	Mastacembelus_armatus
ENSUAMG00000024633	RBFOX1	75	89.123	ENSMGAG00000008606	RBFOX1	96	88.929	Meleagris_gallopavo
ENSUAMG00000024633	RBFOX1	100	58.824	ENSMAUG00000020570	Rbfox1	96	59.128	Mesocricetus_auratus
ENSUAMG00000024633	RBFOX1	99	93.924	ENSMICG00000034286	RBFOX1	100	93.924	Microcebus_murinus
ENSUAMG00000024633	RBFOX1	100	91.436	ENSMOCG00000020932	Rbfox1	99	93.734	Microtus_ochrogaster
ENSUAMG00000024633	RBFOX1	88	77.303	ENSMMOG00000009716	rbfox1	86	77.303	Mola_mola
ENSUAMG00000024633	RBFOX1	89	92.938	ENSMODG00000005826	RBFOX1	100	92.938	Monodelphis_domestica
ENSUAMG00000024633	RBFOX1	100	74.054	ENSMALG00000003337	rbfox1	100	69.927	Monopterus_albus
ENSUAMG00000024633	RBFOX1	100	91.688	MGP_CAROLIEiJ_G0020427	Rbfox1	100	91.688	Mus_caroli
ENSUAMG00000024633	RBFOX1	100	93.593	ENSMUSG00000008658	Rbfox1	98	97.173	Mus_musculus
ENSUAMG00000024633	RBFOX1	100	91.688	MGP_PahariEiJ_G0016135	Rbfox1	100	91.688	Mus_pahari
ENSUAMG00000024633	RBFOX1	100	91.184	MGP_SPRETEiJ_G0021321	Rbfox1	100	91.184	Mus_spretus
ENSUAMG00000024633	RBFOX1	99	94.924	ENSMPUG00000014822	RBFOX1	100	94.924	Mustela_putorius_furo
ENSUAMG00000024633	RBFOX1	77	94.137	ENSMLUG00000015896	RBFOX1	100	94.137	Myotis_lucifugus
ENSUAMG00000024633	RBFOX1	100	92.172	ENSNGAG00000023276	Rbfox1	99	94.517	Nannospalax_galili
ENSUAMG00000024633	RBFOX1	100	62.113	ENSNBRG00000011084	rbfox1	94	58.495	Neolamprologus_brichardi
ENSUAMG00000024633	RBFOX1	97	94.271	ENSNLEG00000010017	-	92	94.271	Nomascus_leucogenys
ENSUAMG00000024633	RBFOX1	82	96.923	ENSMEUG00000012525	RBFOX1	74	96.923	Notamacropus_eugenii
ENSUAMG00000024633	RBFOX1	74	100.000	ENSOPRG00000006199	-	67	100.000	Ochotona_princeps
ENSUAMG00000024633	RBFOX1	100	90.932	ENSODEG00000013166	RBFOX1	100	90.932	Octodon_degus
ENSUAMG00000024633	RBFOX1	92	92.077	ENSOANG00000002379	RBFOX1	97	92.077	Ornithorhynchus_anatinus
ENSUAMG00000024633	RBFOX1	62	96.789	ENSOCUG00000001205	-	97	96.789	Oryctolagus_cuniculus
ENSUAMG00000024633	RBFOX1	97	94.517	ENSOGAG00000025535	RBFOX1	96	94.517	Otolemur_garnettii
ENSUAMG00000024633	RBFOX1	66	85.657	ENSOARG00000005135	RBFOX1	100	85.657	Ovis_aries
ENSUAMG00000024633	RBFOX1	100	96.570	ENSPPAG00000036238	-	100	96.570	Pan_paniscus
ENSUAMG00000024633	RBFOX1	97	95.052	ENSPPRG00000006546	RBFOX1	92	95.052	Panthera_pardus
ENSUAMG00000024633	RBFOX1	100	87.003	ENSPTIG00000021154	RBFOX1	100	87.003	Panthera_tigris_altaica
ENSUAMG00000024633	RBFOX1	100	96.570	ENSPTRG00000007744	RBFOX1	100	96.570	Pan_troglodytes
ENSUAMG00000024633	RBFOX1	93	98.580	ENSPANG00000026500	RBFOX1	98	98.580	Papio_anubis
ENSUAMG00000024633	RBFOX1	74	90.000	ENSPKIG00000019353	rbfox1	81	92.000	Paramormyrops_kingsleyae
ENSUAMG00000024633	RBFOX1	100	77.839	ENSPKIG00000009667	-	99	83.041	Paramormyrops_kingsleyae
ENSUAMG00000024633	RBFOX1	100	88.579	ENSPSIG00000006523	RBFOX1	98	87.817	Pelodiscus_sinensis
ENSUAMG00000024633	RBFOX1	100	91.688	ENSPEMG00000017607	Rbfox1	100	91.688	Peromyscus_maniculatus_bairdii
ENSUAMG00000024633	RBFOX1	72	94.014	ENSPCIG00000026887	RBFOX1	100	94.014	Phascolarctos_cinereus
ENSUAMG00000024633	RBFOX1	99	94.670	ENSPPYG00000007079	-	100	94.670	Pongo_abelii
ENSUAMG00000024633	RBFOX1	90	82.500	ENSPCAG00000002630	RBFOX1	95	81.389	Procavia_capensis
ENSUAMG00000024633	RBFOX1	97	94.010	ENSPCOG00000025687	RBFOX1	97	98.271	Propithecus_coquereli
ENSUAMG00000024633	RBFOX1	97	89.091	ENSPVAG00000013467	RBFOX1	92	90.365	Pteropus_vampyrus
ENSUAMG00000024633	RBFOX1	100	77.778	ENSPNAG00000023109	rbfox1	100	76.984	Pygocentrus_nattereri
ENSUAMG00000024633	RBFOX1	97	93.734	ENSRNOG00000002827	Rbfox1	99	91.957	Rattus_norvegicus
ENSUAMG00000024633	RBFOX1	97	94.778	ENSRBIG00000044478	RBFOX1	100	95.411	Rhinopithecus_bieti
ENSUAMG00000024633	RBFOX1	99	94.430	ENSRROG00000044411	RBFOX1	100	94.430	Rhinopithecus_roxellana
ENSUAMG00000024633	RBFOX1	100	96.306	ENSSBOG00000033726	RBFOX1	100	96.306	Saimiri_boliviensis_boliviensis
ENSUAMG00000024633	RBFOX1	99	88.041	ENSSHAG00000009257	RBFOX1	100	92.683	Sarcophilus_harrisii
ENSUAMG00000024633	RBFOX1	88	70.245	ENSSFOG00015009955	-	83	69.419	Scleropages_formosus
ENSUAMG00000024633	RBFOX1	100	75.575	ENSSFOG00015023675	rbfox1	95	76.423	Scleropages_formosus
ENSUAMG00000024633	RBFOX1	100	73.867	ENSSMAG00000015505	rbfox1	93	69.756	Scophthalmus_maximus
ENSUAMG00000024633	RBFOX1	100	80.000	ENSSDUG00000016413	rbfox1	100	76.378	Seriola_dumerili
ENSUAMG00000024633	RBFOX1	88	77.705	ENSSLDG00000009353	rbfox1	88	78.033	Seriola_lalandi_dorsalis
ENSUAMG00000024633	RBFOX1	88	83.019	ENSSPUG00000009732	RBFOX1	93	79.154	Sphenodon_punctatus
ENSUAMG00000024633	RBFOX1	100	79.942	ENSSPAG00000009723	rbfox1	99	77.394	Stegastes_partitus
ENSUAMG00000024633	RBFOX1	100	94.192	ENSSSCG00000007917	RBFOX1	100	94.068	Sus_scrofa
ENSUAMG00000024633	RBFOX1	97	90.576	ENSTGUG00000004562	RBFOX1	99	88.689	Taeniopygia_guttata
ENSUAMG00000024633	RBFOX1	100	73.067	ENSTRUG00000020940	rbfox1	96	72.267	Takifugu_rubripes
ENSUAMG00000024633	RBFOX1	68	53.041	ENSTNIG00000002567	rbfox1	72	87.234	Tetraodon_nigroviridis
ENSUAMG00000024633	RBFOX1	67	100.000	ENSTBEG00000009169	-	60	100.000	Tupaia_belangeri
ENSUAMG00000024633	RBFOX1	97	94.010	ENSTTRG00000005700	RBFOX1	92	94.010	Tursiops_truncatus
ENSUAMG00000024633	RBFOX1	100	90.741	ENSUMAG00000003579	RBFOX1	100	91.005	Ursus_maritimus
ENSUAMG00000024633	RBFOX1	77	93.506	ENSVPAG00000001284	RBFOX1	74	93.506	Vicugna_pacos
ENSUAMG00000024633	RBFOX1	97	95.300	ENSVVUG00000017311	RBFOX1	98	94.022	Vulpes_vulpes