EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000024806 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 88132 bases
Position: chrLZNR01010106.1:25461-113592
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000032492	R3H	PF01424.22	8.7e-12	1	1
ENSUAMP00000032490	R3H	PF01424.22	1.2e-11	1	1
ENSUAMP00000032481	R3H	PF01424.22	1.3e-11	1	1
ENSUAMP00000032488	R3H	PF01424.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000036210	R3HDM1-203	2088	-	ENSUAMP00000032490	695 (aa)	-	-
ENSUAMT00000036208	R3HDM1-202	2493	-	ENSUAMP00000032488	830 (aa)	-	-
ENSUAMT00000036201	R3HDM1-201	2226	-	ENSUAMP00000032481	741 (aa)	-	-
ENSUAMT00000036212	R3HDM1-204	1641	-	ENSUAMP00000032492	546 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000024806's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000024806's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000024806	R3HDM1	96	46.611	ENSUAMG00000020913	R3HDM2	55	56.593

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000024806	R3HDM1	93	96.649	ENSG00000048991	R3HDM1	99	92.929	Homo_sapiens
ENSUAMG00000024806	R3HDM1	99	57.630	ENSAPOG00000020850	r3hdm1	71	64.000	Acanthochromis_polyacanthus
ENSUAMG00000024806	R3HDM1	99	97.417	ENSAMEG00000014886	R3HDM1	70	99.485	Ailuropoda_melanoleuca
ENSUAMG00000024806	R3HDM1	79	54.831	ENSACIG00000018791	-	81	57.664	Amphilophus_citrinellus
ENSUAMG00000024806	R3HDM1	99	57.630	ENSAOCG00000005192	r3hdm1	75	58.578	Amphiprion_ocellaris
ENSUAMG00000024806	R3HDM1	93	62.933	ENSAPEG00000016108	r3hdm1	74	63.733	Amphiprion_percula
ENSUAMG00000024806	R3HDM1	93	63.172	ENSATEG00000000232	r3hdm1	72	63.978	Anabas_testudineus
ENSUAMG00000024806	R3HDM1	94	82.946	ENSAPLG00000015231	R3HDM1	70	80.359	Anas_platyrhynchos
ENSUAMG00000024806	R3HDM1	94	83.301	ENSACAG00000001676	R3HDM1	71	77.956	Anolis_carolinensis
ENSUAMG00000024806	R3HDM1	99	93.542	ENSANAG00000035334	R3HDM1	72	96.525	Aotus_nancymaae
ENSUAMG00000024806	R3HDM1	93	61.867	ENSACLG00000027282	r3hdm1	73	62.667	Astatotilapia_calliptera
ENSUAMG00000024806	R3HDM1	94	58.791	ENSAMXG00000003536	r3hdm1	71	54.453	Astyanax_mexicanus
ENSUAMG00000024806	R3HDM1	81	47.007	ENSAMXG00000020587	arpp21	78	41.480	Astyanax_mexicanus
ENSUAMG00000024806	R3HDM1	93	74.124	ENSAMXG00000012861	R3HDM1	70	65.824	Astyanax_mexicanus
ENSUAMG00000024806	R3HDM1	99	95.387	ENSBTAG00000013302	R3HDM1	71	92.336	Bos_taurus
ENSUAMG00000024806	R3HDM1	99	93.358	ENSCJAG00000011718	R3HDM1	70	96.774	Callithrix_jacchus
ENSUAMG00000024806	R3HDM1	99	96.863	ENSCAFG00000005075	R3HDM1	70	99.227	Canis_familiaris
ENSUAMG00000024806	R3HDM1	99	96.863	ENSCAFG00020016119	R3HDM1	99	97.238	Canis_lupus_dingo
ENSUAMG00000024806	R3HDM1	99	95.756	ENSCHIG00000020851	R3HDM1	70	96.000	Capra_hircus
ENSUAMG00000024806	R3HDM1	55	78.405	ENSCAPG00000013043	-	100	78.405	Cavia_aperea
ENSUAMG00000024806	R3HDM1	99	91.513	ENSCPOG00000012784	R3HDM1	95	93.570	Cavia_porcellus
ENSUAMG00000024806	R3HDM1	99	92.989	ENSCCAG00000027199	R3HDM1	70	95.490	Cebus_capucinus
ENSUAMG00000024806	R3HDM1	93	97.670	ENSCATG00000023642	R3HDM1	70	96.134	Cercocebus_atys
ENSUAMG00000024806	R3HDM1	99	92.251	ENSCLAG00000007962	R3HDM1	100	90.033	Chinchilla_lanigera
ENSUAMG00000024806	R3HDM1	94	95.146	ENSCSAG00000016356	R3HDM1	71	90.988	Chlorocebus_sabaeus
ENSUAMG00000024806	R3HDM1	73	96.450	ENSCHOG00000013638	R3HDM1	55	89.503	Choloepus_hoffmanni
ENSUAMG00000024806	R3HDM1	80	91.144	ENSCPBG00000009645	R3HDM1	65	91.144	Chrysemys_picta_bellii
ENSUAMG00000024806	R3HDM1	94	94.563	ENSCANG00000034748	R3HDM1	70	94.723	Colobus_angolensis_palliatus
ENSUAMG00000024806	R3HDM1	99	91.697	ENSCGRG00001012357	R3hdm1	69	88.642	Cricetulus_griseus_chok1gshd
ENSUAMG00000024806	R3HDM1	99	91.697	ENSCGRG00000012080	R3hdm1	100	91.362	Cricetulus_griseus_crigri
ENSUAMG00000024806	R3HDM1	99	51.163	ENSCSEG00000008944	r3hdm1	72	54.658	Cynoglossus_semilaevis
ENSUAMG00000024806	R3HDM1	99	55.338	ENSCVAG00000007582	r3hdm1	70	61.600	Cyprinodon_variegatus
ENSUAMG00000024806	R3HDM1	87	43.238	ENSDARG00000061081	arpp21	53	45.662	Danio_rerio
ENSUAMG00000024806	R3HDM1	99	88.342	ENSDNOG00000000771	R3HDM1	70	91.176	Dasypus_novemcinctus
ENSUAMG00000024806	R3HDM1	55	93.023	ENSDORG00000027689	-	100	93.023	Dipodomys_ordii
ENSUAMG00000024806	R3HDM1	89	90.244	ENSETEG00000013606	R3HDM1	70	82.990	Echinops_telfairi
ENSUAMG00000024806	R3HDM1	85	50.204	ENSEBUG00000014746	arpp21	97	43.634	Eptatretus_burgeri
ENSUAMG00000024806	R3HDM1	99	96.494	ENSEASG00005007392	R3HDM1	70	97.548	Equus_asinus_asinus
ENSUAMG00000024806	R3HDM1	99	96.494	ENSECAG00000019114	R3HDM1	70	97.935	Equus_caballus
ENSUAMG00000024806	R3HDM1	99	85.424	ENSEEUG00000012589	R3HDM1	61	87.638	Erinaceus_europaeus
ENSUAMG00000024806	R3HDM1	79	61.853	ENSELUG00000014413	r3hdm1	51	79.478	Esox_lucius
ENSUAMG00000024806	R3HDM1	85	77.670	ENSELUG00000004909	R3HDM1	73	57.477	Esox_lucius
ENSUAMG00000024806	R3HDM1	99	97.048	ENSFCAG00000027113	R3HDM1	70	98.710	Felis_catus
ENSUAMG00000024806	R3HDM1	99	78.860	ENSFALG00000013731	R3HDM1	68	72.660	Ficedula_albicollis
ENSUAMG00000024806	R3HDM1	99	92.620	ENSFDAG00000016478	R3HDM1	99	95.203	Fukomys_damarensis
ENSUAMG00000024806	R3HDM1	99	56.631	ENSFHEG00000018713	r3hdm1	74	62.400	Fundulus_heteroclitus
ENSUAMG00000024806	R3HDM1	68	71.925	ENSGMOG00000006042	-	61	59.393	Gadus_morhua
ENSUAMG00000024806	R3HDM1	93	75.926	ENSGALG00000012246	R3HDM1	64	85.342	Gallus_gallus
ENSUAMG00000024806	R3HDM1	93	61.867	ENSGAFG00000006203	r3hdm1	73	62.667	Gambusia_affinis
ENSUAMG00000024806	R3HDM1	84	67.949	ENSGACG00000014925	r3hdm1	66	68.910	Gasterosteus_aculeatus
ENSUAMG00000024806	R3HDM1	99	81.919	ENSGAGG00000007840	R3HDM1	70	78.581	Gopherus_agassizii
ENSUAMG00000024806	R3HDM1	93	96.263	ENSGGOG00000008156	R3HDM1	81	93.050	Gorilla_gorilla
ENSUAMG00000024806	R3HDM1	99	56.631	ENSHBUG00000015737	R3HDM1	90	58.397	Haplochromis_burtoni
ENSUAMG00000024806	R3HDM1	100	92.532	ENSHGLG00000015718	R3HDM1	99	95.387	Heterocephalus_glaber_female
ENSUAMG00000024806	R3HDM1	99	92.620	ENSHGLG00100003184	-	100	90.033	Heterocephalus_glaber_male
ENSUAMG00000024806	R3HDM1	97	73.514	ENSHGLG00100015374	-	71	73.514	Heterocephalus_glaber_male
ENSUAMG00000024806	R3HDM1	93	59.030	ENSHCOG00000013366	r3hdm1	88	59.750	Hippocampus_comes
ENSUAMG00000024806	R3HDM1	98	53.898	ENSIPUG00000013629	r3hdm1	61	69.375	Ictalurus_punctatus
ENSUAMG00000024806	R3HDM1	93	68.901	ENSIPUG00000001676	R3HDM1	84	64.109	Ictalurus_punctatus
ENSUAMG00000024806	R3HDM1	100	94.536	ENSSTOG00000007572	R3HDM1	99	97.232	Ictidomys_tridecemlineatus
ENSUAMG00000024806	R3HDM1	55	89.701	ENSJJAG00000018208	-	100	89.701	Jaculus_jaculus
ENSUAMG00000024806	R3HDM1	53	77.193	ENSKMAG00000013373	-	90	77.193	Kryptolebias_marmoratus
ENSUAMG00000024806	R3HDM1	70	63.158	ENSLBEG00000027981	-	99	59.570	Labrus_bergylta
ENSUAMG00000024806	R3HDM1	84	81.799	ENSLACG00000005334	R3HDM1	69	71.615	Latimeria_chalumnae
ENSUAMG00000024806	R3HDM1	94	74.761	ENSLOCG00000001641	r3hdm1	70	67.636	Lepisosteus_oculatus
ENSUAMG00000024806	R3HDM1	99	94.834	ENSLAFG00000009065	R3HDM1	71	91.460	Loxodonta_africana
ENSUAMG00000024806	R3HDM1	93	96.392	ENSMFAG00000030331	R3HDM1	70	96.392	Macaca_fascicularis
ENSUAMG00000024806	R3HDM1	94	95.146	ENSMMUG00000009844	R3HDM1	70	96.134	Macaca_mulatta
ENSUAMG00000024806	R3HDM1	94	95.340	ENSMNEG00000027793	R3HDM1	70	96.263	Macaca_nemestrina
ENSUAMG00000024806	R3HDM1	93	96.392	ENSMLEG00000043189	R3HDM1	70	96.392	Mandrillus_leucophaeus
ENSUAMG00000024806	R3HDM1	93	62.198	ENSMAMG00000004532	r3hdm1	79	51.043	Mastacembelus_armatus
ENSUAMG00000024806	R3HDM1	93	61.867	ENSMZEG00005003157	r3hdm1	74	62.667	Maylandia_zebra
ENSUAMG00000024806	R3HDM1	94	81.660	ENSMGAG00000012461	R3HDM1	70	79.794	Meleagris_gallopavo
ENSUAMG00000024806	R3HDM1	99	91.882	ENSMAUG00000010315	R3hdm1	100	91.694	Mesocricetus_auratus
ENSUAMG00000024806	R3HDM1	93	94.109	ENSMICG00000042655	-	71	96.961	Microcebus_murinus
ENSUAMG00000024806	R3HDM1	99	94.649	ENSMICG00000005900	-	70	95.747	Microcebus_murinus
ENSUAMG00000024806	R3HDM1	99	91.788	ENSMOCG00000019833	-	99	94.465	Microtus_ochrogaster
ENSUAMG00000024806	R3HDM1	99	85.895	ENSMODG00000000923	R3HDM1	77	78.802	Monodelphis_domestica
ENSUAMG00000024806	R3HDM1	93	57.816	ENSMALG00000009000	r3hdm1	63	58.561	Monopterus_albus
ENSUAMG00000024806	R3HDM1	99	91.144	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.979	Mus_caroli
ENSUAMG00000024806	R3HDM1	99	91.144	ENSMUSG00000056211	R3hdm1	100	94.979	Mus_musculus
ENSUAMG00000024806	R3HDM1	99	90.590	MGP_PahariEiJ_G0027779	R3hdm1	100	94.979	Mus_pahari
ENSUAMG00000024806	R3HDM1	99	91.328	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.979	Mus_spretus
ENSUAMG00000024806	R3HDM1	99	97.048	ENSMPUG00000002412	R3HDM1	70	98.710	Mustela_putorius_furo
ENSUAMG00000024806	R3HDM1	99	94.834	ENSMLUG00000013824	R3HDM1	70	96.149	Myotis_lucifugus
ENSUAMG00000024806	R3HDM1	55	91.694	ENSNGAG00000001313	-	100	91.694	Nannospalax_galili
ENSUAMG00000024806	R3HDM1	93	96.521	ENSNLEG00000008622	R3HDM1	70	96.521	Nomascus_leucogenys
ENSUAMG00000024806	R3HDM1	99	75.786	ENSMEUG00000011784	R3HDM1	79	71.871	Notamacropus_eugenii
ENSUAMG00000024806	R3HDM1	99	93.173	ENSODEG00000008607	R3HDM1	100	91.362	Octodon_degus
ENSUAMG00000024806	R3HDM1	85	66.563	ENSONIG00000012017	r3hdm1	61	67.492	Oreochromis_niloticus
ENSUAMG00000024806	R3HDM1	95	86.372	ENSOANG00000007987	R3HDM1	70	82.074	Ornithorhynchus_anatinus
ENSUAMG00000024806	R3HDM1	99	94.280	ENSOCUG00000017366	R3HDM1	77	94.459	Oryctolagus_cuniculus
ENSUAMG00000024806	R3HDM1	92	57.088	ENSORLG00000004297	r3hdm1	69	61.702	Oryzias_latipes
ENSUAMG00000024806	R3HDM1	74	59.524	ENSORLG00020019252	-	93	61.538	Oryzias_latipes_hni
ENSUAMG00000024806	R3HDM1	92	57.280	ENSORLG00015017355	r3hdm1	67	62.133	Oryzias_latipes_hsok
ENSUAMG00000024806	R3HDM1	92	57.471	ENSOMEG00000003882	-	94	58.317	Oryzias_melastigma
ENSUAMG00000024806	R3HDM1	99	94.649	ENSOGAG00000003136	R3HDM1	70	94.452	Otolemur_garnettii
ENSUAMG00000024806	R3HDM1	99	95.756	ENSOARG00000010788	R3HDM1	70	95.871	Ovis_aries
ENSUAMG00000024806	R3HDM1	93	96.401	ENSPPAG00000027858	R3HDM1	71	96.401	Pan_paniscus
ENSUAMG00000024806	R3HDM1	99	96.863	ENSPPRG00000002626	R3HDM1	70	98.452	Panthera_pardus
ENSUAMG00000024806	R3HDM1	99	97.048	ENSPTIG00000016581	R3HDM1	70	98.452	Panthera_tigris_altaica
ENSUAMG00000024806	R3HDM1	93	96.272	ENSPTRG00000012494	R3HDM1	70	96.272	Pan_troglodytes
ENSUAMG00000024806	R3HDM1	93	96.263	ENSPANG00000026448	R3HDM1	70	96.263	Papio_anubis
ENSUAMG00000024806	R3HDM1	86	76.358	ENSPKIG00000004328	r3hdm1	63	69.944	Paramormyrops_kingsleyae
ENSUAMG00000024806	R3HDM1	81	63.453	ENSPKIG00000011224	R3HDM1	93	63.342	Paramormyrops_kingsleyae
ENSUAMG00000024806	R3HDM1	95	83.654	ENSPSIG00000012915	R3HDM1	70	80.026	Pelodiscus_sinensis
ENSUAMG00000024806	R3HDM1	77	54.222	ENSPMGG00000011264	-	92	55.606	Periophthalmus_magnuspinnatus
ENSUAMG00000024806	R3HDM1	99	91.513	ENSPEMG00000015187	R3hdm1	100	91.362	Peromyscus_maniculatus_bairdii
ENSUAMG00000024806	R3HDM1	82	56.394	ENSPMAG00000003369	-	73	55.348	Petromyzon_marinus
ENSUAMG00000024806	R3HDM1	99	88.787	ENSPCIG00000002491	R3HDM1	70	85.897	Phascolarctos_cinereus
ENSUAMG00000024806	R3HDM1	99	56.172	ENSPFOG00000015036	r3hdm1	74	55.961	Poecilia_formosa
ENSUAMG00000024806	R3HDM1	93	59.682	ENSPLAG00000018042	r3hdm1	79	50.895	Poecilia_latipinna
ENSUAMG00000024806	R3HDM1	93	55.504	ENSPMEG00000023947	r3hdm1	79	50.960	Poecilia_mexicana
ENSUAMG00000024806	R3HDM1	99	55.714	ENSPREG00000007902	r3hdm1	94	60.044	Poecilia_reticulata
ENSUAMG00000024806	R3HDM1	94	92.829	ENSPPYG00000012815	R3HDM1	70	93.694	Pongo_abelii
ENSUAMG00000024806	R3HDM1	99	79.705	ENSPCAG00000006208	R3HDM1	70	78.065	Procavia_capensis
ENSUAMG00000024806	R3HDM1	99	88.787	ENSPCOG00000012698	R3HDM1	70	91.645	Propithecus_coquereli
ENSUAMG00000024806	R3HDM1	99	90.959	ENSPVAG00000006098	R3HDM1	70	88.046	Pteropus_vampyrus
ENSUAMG00000024806	R3HDM1	74	60.577	ENSPNYG00000008701	-	97	60.766	Pundamilia_nyererei
ENSUAMG00000024806	R3HDM1	78	76.603	ENSPNAG00000005436	R3HDM1	64	64.321	Pygocentrus_nattereri
ENSUAMG00000024806	R3HDM1	85	74.121	ENSPNAG00000013952	r3hdm1	58	74.522	Pygocentrus_nattereri
ENSUAMG00000024806	R3HDM1	93	43.907	ENSPNAG00000004162	arpp21	84	37.500	Pygocentrus_nattereri
ENSUAMG00000024806	R3HDM1	99	91.144	ENSRNOG00000004099	R3hdm1	71	87.871	Rattus_norvegicus
ENSUAMG00000024806	R3HDM1	93	93.445	ENSRBIG00000033317	R3HDM1	70	93.188	Rhinopithecus_bieti
ENSUAMG00000024806	R3HDM1	93	97.790	ENSRROG00000034534	R3HDM1	70	96.010	Rhinopithecus_roxellana
ENSUAMG00000024806	R3HDM1	94	94.563	ENSSBOG00000020389	R3HDM1	70	95.490	Saimiri_boliviensis_boliviensis
ENSUAMG00000024806	R3HDM1	99	89.134	ENSSHAG00000016999	R3HDM1	70	85.843	Sarcophilus_harrisii
ENSUAMG00000024806	R3HDM1	93	66.410	ENSSFOG00015019851	-	76	57.646	Scleropages_formosus
ENSUAMG00000024806	R3HDM1	93	72.283	ENSSFOG00015014134	r3hdm1	68	70.874	Scleropages_formosus
ENSUAMG00000024806	R3HDM1	93	60.270	ENSSMAG00000001669	r3hdm1	65	61.081	Scophthalmus_maximus
ENSUAMG00000024806	R3HDM1	96	62.500	ENSSDUG00000010749	r3hdm1	71	63.298	Seriola_dumerili
ENSUAMG00000024806	R3HDM1	84	68.910	ENSSLDG00000004499	r3hdm1	71	51.582	Seriola_lalandi_dorsalis
ENSUAMG00000024806	R3HDM1	95	85.605	ENSSPUG00000004167	R3HDM1	70	82.134	Sphenodon_punctatus
ENSUAMG00000024806	R3HDM1	99	58.348	ENSSPAG00000004648	r3hdm1	69	64.000	Stegastes_partitus
ENSUAMG00000024806	R3HDM1	99	96.494	ENSSSCG00000015692	R3HDM1	70	97.935	Sus_scrofa
ENSUAMG00000024806	R3HDM1	99	78.676	ENSTGUG00000011750	R3HDM1	70	75.641	Taeniopygia_guttata
ENSUAMG00000024806	R3HDM1	93	57.841	ENSTRUG00000011654	r3hdm1	71	57.841	Takifugu_rubripes
ENSUAMG00000024806	R3HDM1	83	67.412	ENSTNIG00000010362	r3hdm1	72	51.034	Tetraodon_nigroviridis
ENSUAMG00000024806	R3HDM1	97	89.231	ENSTTRG00000003935	R3HDM1	70	92.516	Tursiops_truncatus
ENSUAMG00000024806	R3HDM1	97	95.676	ENSUMAG00000005552	R3HDM1	66	99.842	Ursus_maritimus
ENSUAMG00000024806	R3HDM1	93	100.000	ENSVPAG00000007333	R3HDM1	64	100.000	Vicugna_pacos
ENSUAMG00000024806	R3HDM1	99	96.679	ENSVVUG00000006457	R3HDM1	70	96.356	Vulpes_vulpes
ENSUAMG00000024806	R3HDM1	94	71.401	ENSXETG00000019330	r3hdm1	79	67.436	Xenopus_tropicalis
ENSUAMG00000024806	R3HDM1	83	68.285	ENSXCOG00000017448	r3hdm1	74	69.256	Xiphophorus_couchianus
ENSUAMG00000024806	R3HDM1	93	61.600	ENSXMAG00000007885	r3hdm1	62	68.932	Xiphophorus_maculatus