EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000024876 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 38062 bases
Position: chrLZNR01010115.1:620-38681
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000032584	TruB_N	PF01509.18	3.5e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000036312	TRUB1-201	1684	-	ENSUAMP00000032584	350 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000024876's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000024876's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000024876	TRUB1	72	30.928	ENSUAMG00000020276	TRUB2	85	30.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000024876	TRUB1	99	93.696	ENSG00000165832	TRUB1	96	94.345	Homo_sapiens
ENSUAMG00000024876	TRUB1	70	68.980	ENSAPOG00000020565	trub1	89	68.699	Acanthochromis_polyacanthus
ENSUAMG00000024876	TRUB1	100	97.159	ENSAMEG00000014931	TRUB1	100	97.159	Ailuropoda_melanoleuca
ENSUAMG00000024876	TRUB1	81	57.394	ENSACIG00000003060	trub1	94	57.394	Amphilophus_citrinellus
ENSUAMG00000024876	TRUB1	70	68.980	ENSAOCG00000017188	trub1	89	68.699	Amphiprion_ocellaris
ENSUAMG00000024876	TRUB1	70	68.293	ENSAPEG00000015209	trub1	89	68.293	Amphiprion_percula
ENSUAMG00000024876	TRUB1	69	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSUAMG00000024876	TRUB1	79	76.364	ENSAPLG00000006808	TRUB1	99	76.364	Anas_platyrhynchos
ENSUAMG00000024876	TRUB1	77	71.747	ENSACAG00000009282	TRUB1	97	71.747	Anolis_carolinensis
ENSUAMG00000024876	TRUB1	95	95.509	ENSANAG00000022870	TRUB1	95	95.522	Aotus_nancymaae
ENSUAMG00000024876	TRUB1	72	67.460	ENSACLG00000000823	trub1	91	67.460	Astatotilapia_calliptera
ENSUAMG00000024876	TRUB1	77	65.926	ENSAMXG00000015845	trub1	90	65.926	Astyanax_mexicanus
ENSUAMG00000024876	TRUB1	98	95.029	ENSBTAG00000012955	TRUB1	95	95.536	Bos_taurus
ENSUAMG00000024876	TRUB1	99	94.286	ENSCJAG00000047815	TRUB1	96	95.238	Callithrix_jacchus
ENSUAMG00000024876	TRUB1	99	97.135	ENSCAFG00000011688	TRUB1	99	97.135	Canis_familiaris
ENSUAMG00000024876	TRUB1	99	97.421	ENSCAFG00020013237	TRUB1	99	97.421	Canis_lupus_dingo
ENSUAMG00000024876	TRUB1	98	94.737	ENSCHIG00000020884	TRUB1	96	96.262	Capra_hircus
ENSUAMG00000024876	TRUB1	99	92.286	ENSTSYG00000000446	TRUB1	86	96.678	Carlito_syrichta
ENSUAMG00000024876	TRUB1	72	86.166	ENSCAPG00000017088	TRUB1	99	86.166	Cavia_aperea
ENSUAMG00000024876	TRUB1	71	81.048	ENSCPOG00000030129	-	76	93.846	Cavia_porcellus
ENSUAMG00000024876	TRUB1	70	86.122	ENSCPOG00000040236	-	95	86.695	Cavia_porcellus
ENSUAMG00000024876	TRUB1	96	94.643	ENSCCAG00000028842	TRUB1	96	94.643	Cebus_capucinus
ENSUAMG00000024876	TRUB1	99	93.983	ENSCATG00000033431	TRUB1	96	94.643	Cercocebus_atys
ENSUAMG00000024876	TRUB1	70	89.796	ENSCLAG00000008664	TRUB1	95	90.558	Chinchilla_lanigera
ENSUAMG00000024876	TRUB1	99	94.269	ENSCSAG00000004891	TRUB1	96	94.940	Chlorocebus_sabaeus
ENSUAMG00000024876	TRUB1	99	79.480	ENSCHOG00000011931	TRUB1	95	80.180	Choloepus_hoffmanni
ENSUAMG00000024876	TRUB1	78	80.147	ENSCPBG00000003051	TRUB1	94	80.147	Chrysemys_picta_bellii
ENSUAMG00000024876	TRUB1	99	94.269	ENSCANG00000029445	TRUB1	96	94.940	Colobus_angolensis_palliatus
ENSUAMG00000024876	TRUB1	73	88.583	ENSCGRG00001016772	-	90	80.135	Cricetulus_griseus_chok1gshd
ENSUAMG00000024876	TRUB1	80	80.714	ENSCGRG00001010322	-	79	80.612	Cricetulus_griseus_chok1gshd
ENSUAMG00000024876	TRUB1	80	89.643	ENSCGRG00000010806	Trub1	91	88.889	Cricetulus_griseus_crigri
ENSUAMG00000024876	TRUB1	73	62.891	ENSCSEG00000011261	trub1	98	57.285	Cynoglossus_semilaevis
ENSUAMG00000024876	TRUB1	70	68.571	ENSCVAG00000008791	trub1	78	67.059	Cyprinodon_variegatus
ENSUAMG00000024876	TRUB1	80	64.286	ENSDARG00000053805	trub1	93	64.286	Danio_rerio
ENSUAMG00000024876	TRUB1	97	89.118	ENSDNOG00000001069	TRUB1	95	89.851	Dasypus_novemcinctus
ENSUAMG00000024876	TRUB1	99	89.971	ENSDORG00000010431	Trub1	87	95.681	Dipodomys_ordii
ENSUAMG00000024876	TRUB1	81	78.431	ENSETEG00000009183	TRUB1	66	87.248	Echinops_telfairi
ENSUAMG00000024876	TRUB1	96	95.833	ENSEASG00005014739	TRUB1	96	95.833	Equus_asinus_asinus
ENSUAMG00000024876	TRUB1	96	95.833	ENSECAG00000007177	TRUB1	96	95.833	Equus_caballus
ENSUAMG00000024876	TRUB1	99	77.095	ENSEEUG00000013993	TRUB1	96	79.070	Erinaceus_europaeus
ENSUAMG00000024876	TRUB1	70	70.204	ENSELUG00000000502	trub1	86	70.204	Esox_lucius
ENSUAMG00000024876	TRUB1	100	96.286	ENSFCAG00000031927	TRUB1	100	96.286	Felis_catus
ENSUAMG00000024876	TRUB1	69	77.083	ENSFALG00000002232	TRUB1	92	77.083	Ficedula_albicollis
ENSUAMG00000024876	TRUB1	70	88.980	ENSFDAG00000008140	TRUB1	95	91.379	Fukomys_damarensis
ENSUAMG00000024876	TRUB1	70	66.939	ENSFHEG00000004016	trub1	84	66.939	Fundulus_heteroclitus
ENSUAMG00000024876	TRUB1	78	75.000	ENSGALG00000009091	TRUB1	97	74.057	Gallus_gallus
ENSUAMG00000024876	TRUB1	68	65.690	ENSGAFG00000009193	trub1	86	64.754	Gambusia_affinis
ENSUAMG00000024876	TRUB1	56	68.718	ENSGACG00000015387	trub1	96	68.718	Gasterosteus_aculeatus
ENSUAMG00000024876	TRUB1	88	74.110	ENSGAGG00000009758	TRUB1	81	78.873	Gopherus_agassizii
ENSUAMG00000024876	TRUB1	99	94.269	ENSGGOG00000004583	TRUB1	96	94.940	Gorilla_gorilla
ENSUAMG00000024876	TRUB1	72	67.460	ENSHBUG00000016787	trub1	91	67.460	Haplochromis_burtoni
ENSUAMG00000024876	TRUB1	99	87.966	ENSHGLG00000015314	TRUB1	86	92.027	Heterocephalus_glaber_female
ENSUAMG00000024876	TRUB1	70	86.939	ENSHGLG00100009183	TRUB1	83	95.431	Heterocephalus_glaber_male
ENSUAMG00000024876	TRUB1	70	68.571	ENSHCOG00000017877	trub1	89	68.571	Hippocampus_comes
ENSUAMG00000024876	TRUB1	79	65.942	ENSIPUG00000017559	trub1	97	65.942	Ictalurus_punctatus
ENSUAMG00000024876	TRUB1	86	95.681	ENSSTOG00000003641	TRUB1	90	95.681	Ictidomys_tridecemlineatus
ENSUAMG00000024876	TRUB1	99	84.241	ENSJJAG00000011800	Trub1	88	91.973	Jaculus_jaculus
ENSUAMG00000024876	TRUB1	72	66.148	ENSKMAG00000006232	trub1	92	66.148	Kryptolebias_marmoratus
ENSUAMG00000024876	TRUB1	76	64.662	ENSLBEG00000026722	trub1	92	64.662	Labrus_bergylta
ENSUAMG00000024876	TRUB1	79	73.913	ENSLACG00000014885	TRUB1	92	73.913	Latimeria_chalumnae
ENSUAMG00000024876	TRUB1	78	71.062	ENSLOCG00000012979	trub1	93	71.062	Lepisosteus_oculatus
ENSUAMG00000024876	TRUB1	99	80.672	ENSLAFG00000015452	TRUB1	86	86.000	Loxodonta_africana
ENSUAMG00000024876	TRUB1	99	93.983	ENSMFAG00000031767	TRUB1	96	94.643	Macaca_fascicularis
ENSUAMG00000024876	TRUB1	99	94.269	ENSMMUG00000001902	TRUB1	96	94.940	Macaca_mulatta
ENSUAMG00000024876	TRUB1	99	89.971	ENSMNEG00000044646	TRUB1	96	90.476	Macaca_nemestrina
ENSUAMG00000024876	TRUB1	99	93.983	ENSMLEG00000042655	TRUB1	96	94.643	Mandrillus_leucophaeus
ENSUAMG00000024876	TRUB1	72	67.460	ENSMZEG00005024095	trub1	91	67.460	Maylandia_zebra
ENSUAMG00000024876	TRUB1	78	74.265	ENSMGAG00000011135	TRUB1	93	74.265	Meleagris_gallopavo
ENSUAMG00000024876	TRUB1	85	85.906	ENSMAUG00000011101	Trub1	89	86.000	Mesocricetus_auratus
ENSUAMG00000024876	TRUB1	99	95.415	ENSMICG00000016324	TRUB1	96	95.833	Microcebus_murinus
ENSUAMG00000024876	TRUB1	93	84.308	ENSMOCG00000017759	Trub1	91	88.040	Microtus_ochrogaster
ENSUAMG00000024876	TRUB1	82	84.321	ENSMODG00000009676	TRUB1	82	82.492	Monodelphis_domestica
ENSUAMG00000024876	TRUB1	99	82.808	MGP_CAROLIEiJ_G0023100	Trub1	89	87.375	Mus_caroli
ENSUAMG00000024876	TRUB1	99	81.662	ENSMUSG00000025086	Trub1	89	86.379	Mus_musculus
ENSUAMG00000024876	TRUB1	99	82.521	MGP_PahariEiJ_G0014588	Trub1	89	87.708	Mus_pahari
ENSUAMG00000024876	TRUB1	99	81.948	MGP_SPRETEiJ_G0024021	Trub1	89	86.711	Mus_spretus
ENSUAMG00000024876	TRUB1	100	98.000	ENSMPUG00000003556	TRUB1	100	98.000	Mustela_putorius_furo
ENSUAMG00000024876	TRUB1	95	90.120	ENSMLUG00000017686	TRUB1	96	89.286	Myotis_lucifugus
ENSUAMG00000024876	TRUB1	99	86.819	ENSNGAG00000018682	Trub1	86	92.359	Nannospalax_galili
ENSUAMG00000024876	TRUB1	70	68.699	ENSNBRG00000023393	trub1	88	68.699	Neolamprologus_brichardi
ENSUAMG00000024876	TRUB1	96	94.048	ENSNLEG00000016345	TRUB1	96	94.048	Nomascus_leucogenys
ENSUAMG00000024876	TRUB1	57	91.542	ENSMEUG00000006603	TRUB1	78	88.626	Notamacropus_eugenii
ENSUAMG00000024876	TRUB1	86	87.375	ENSOPRG00000009371	TRUB1	88	87.375	Ochotona_princeps
ENSUAMG00000024876	TRUB1	99	85.387	ENSODEG00000010854	TRUB1	97	86.053	Octodon_degus
ENSUAMG00000024876	TRUB1	70	68.293	ENSONIG00000007249	trub1	89	68.293	Oreochromis_niloticus
ENSUAMG00000024876	TRUB1	78	81.022	ENSOANG00000001556	TRUB1	93	78.799	Ornithorhynchus_anatinus
ENSUAMG00000024876	TRUB1	99	85.100	ENSOCUG00000009456	TRUB1	96	88.520	Oryctolagus_cuniculus
ENSUAMG00000024876	TRUB1	69	69.710	ENSORLG00000029719	trub1	86	69.710	Oryzias_latipes
ENSUAMG00000024876	TRUB1	69	69.295	ENSORLG00020016767	trub1	85	69.295	Oryzias_latipes_hni
ENSUAMG00000024876	TRUB1	69	69.295	ENSORLG00015014728	trub1	86	69.295	Oryzias_latipes_hsok
ENSUAMG00000024876	TRUB1	74	66.795	ENSOMEG00000014556	trub1	90	66.926	Oryzias_melastigma
ENSUAMG00000024876	TRUB1	99	95.415	ENSOGAG00000015895	TRUB1	96	97.024	Otolemur_garnettii
ENSUAMG00000024876	TRUB1	84	95.033	ENSOARG00000015591	TRUB1	87	94.771	Ovis_aries
ENSUAMG00000024876	TRUB1	99	94.269	ENSPPAG00000043645	TRUB1	96	94.940	Pan_paniscus
ENSUAMG00000024876	TRUB1	96	95.846	ENSPPRG00000007096	TRUB1	97	95.846	Panthera_pardus
ENSUAMG00000024876	TRUB1	96	96.142	ENSPTIG00000006378	TRUB1	97	96.142	Panthera_tigris_altaica
ENSUAMG00000024876	TRUB1	99	94.269	ENSPTRG00000002964	TRUB1	96	94.940	Pan_troglodytes
ENSUAMG00000024876	TRUB1	99	94.269	ENSPANG00000020712	TRUB1	96	94.940	Papio_anubis
ENSUAMG00000024876	TRUB1	78	77.574	ENSPSIG00000012877	TRUB1	93	77.574	Pelodiscus_sinensis
ENSUAMG00000024876	TRUB1	70	65.714	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSUAMG00000024876	TRUB1	99	80.516	ENSPEMG00000011156	Trub1	88	86.333	Peromyscus_maniculatus_bairdii
ENSUAMG00000024876	TRUB1	82	83.624	ENSPCIG00000009729	TRUB1	80	82.594	Phascolarctos_cinereus
ENSUAMG00000024876	TRUB1	70	66.531	ENSPFOG00000009950	trub1	90	66.531	Poecilia_formosa
ENSUAMG00000024876	TRUB1	70	66.531	ENSPLAG00000013855	trub1	86	66.531	Poecilia_latipinna
ENSUAMG00000024876	TRUB1	70	66.531	ENSPMEG00000009064	trub1	88	66.531	Poecilia_mexicana
ENSUAMG00000024876	TRUB1	70	67.347	ENSPREG00000003343	trub1	88	67.347	Poecilia_reticulata
ENSUAMG00000024876	TRUB1	96	94.345	ENSPPYG00000002676	TRUB1	96	94.345	Pongo_abelii
ENSUAMG00000024876	TRUB1	99	76.989	ENSPCAG00000008427	TRUB1	96	76.331	Procavia_capensis
ENSUAMG00000024876	TRUB1	99	89.685	ENSPCOG00000024360	TRUB1	96	90.149	Propithecus_coquereli
ENSUAMG00000024876	TRUB1	75	95.455	ENSPVAG00000007575	TRUB1	95	96.016	Pteropus_vampyrus
ENSUAMG00000024876	TRUB1	72	67.460	ENSPNYG00000018614	trub1	91	67.460	Pundamilia_nyererei
ENSUAMG00000024876	TRUB1	78	58.456	ENSPNAG00000006881	trub1	88	58.456	Pygocentrus_nattereri
ENSUAMG00000024876	TRUB1	99	83.095	ENSRNOG00000017321	Trub1	88	87.708	Rattus_norvegicus
ENSUAMG00000024876	TRUB1	99	84.527	ENSRBIG00000033423	TRUB1	96	84.570	Rhinopithecus_bieti
ENSUAMG00000024876	TRUB1	99	94.269	ENSRROG00000033902	TRUB1	96	94.659	Rhinopithecus_roxellana
ENSUAMG00000024876	TRUB1	96	94.940	ENSSBOG00000024237	TRUB1	96	94.940	Saimiri_boliviensis_boliviensis
ENSUAMG00000024876	TRUB1	73	82.490	ENSSHAG00000009346	TRUB1	86	82.490	Sarcophilus_harrisii
ENSUAMG00000024876	TRUB1	69	70.370	ENSSFOG00015022124	trub1	83	70.370	Scleropages_formosus
ENSUAMG00000024876	TRUB1	70	69.106	ENSSMAG00000001020	trub1	88	69.106	Scophthalmus_maximus
ENSUAMG00000024876	TRUB1	69	69.583	ENSSDUG00000016414	trub1	88	69.512	Seriola_dumerili
ENSUAMG00000024876	TRUB1	69	70.000	ENSSLDG00000015486	trub1	88	69.919	Seriola_lalandi_dorsalis
ENSUAMG00000024876	TRUB1	80	77.857	ENSSPUG00000001642	TRUB1	96	77.857	Sphenodon_punctatus
ENSUAMG00000024876	TRUB1	75	66.920	ENSSPAG00000001217	trub1	94	66.920	Stegastes_partitus
ENSUAMG00000024876	TRUB1	99	90.258	ENSSSCG00000010653	TRUB1	96	91.071	Sus_scrofa
ENSUAMG00000024876	TRUB1	77	76.667	ENSTGUG00000010971	TRUB1	97	76.471	Taeniopygia_guttata
ENSUAMG00000024876	TRUB1	73	78.346	ENSTBEG00000002880	TRUB1	100	78.346	Tupaia_belangeri
ENSUAMG00000024876	TRUB1	72	90.438	ENSTTRG00000005767	TRUB1	95	94.422	Tursiops_truncatus
ENSUAMG00000024876	TRUB1	100	96.000	ENSUMAG00000002411	TRUB1	100	96.000	Ursus_maritimus
ENSUAMG00000024876	TRUB1	99	95.129	ENSVPAG00000005507	TRUB1	96	95.536	Vicugna_pacos
ENSUAMG00000024876	TRUB1	99	96.848	ENSVVUG00000010085	TRUB1	83	96.848	Vulpes_vulpes
ENSUAMG00000024876	TRUB1	78	66.912	ENSXETG00000023828	trub1	98	66.912	Xenopus_tropicalis
ENSUAMG00000024876	TRUB1	69	65.432	ENSXCOG00000017847	trub1	86	65.432	Xiphophorus_couchianus
ENSUAMG00000024876	TRUB1	70	65.714	ENSXMAG00000014701	trub1	88	65.714	Xiphophorus_maculatus