EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUAMG00000025152 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 241122 bases
Position: chrLZNR01000716.1:27513-268634
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000032984	EST1	PF10374.9	3.9e-15	1	1
ENSUAMP00000032982	EST1	PF10374.9	4e-15	1	1
ENSUAMP00000032984	EST1_DNA_bind	PF10373.9	2.4e-60	1	1
ENSUAMP00000032982	EST1_DNA_bind	PF10373.9	2.5e-60	1	1
ENSUAMP00000032984	PIN_4	PF13638.6	2e-21	1	1
ENSUAMP00000032982	PIN_4	PF13638.6	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000036754	SMG6-201	4548	-	ENSUAMP00000032982	1414 (aa)	-	-
ENSUAMT00000036756	SMG6-202	4657	-	ENSUAMP00000032984	1383 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000025152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000025152's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000025152	SMG6	100	93.012	ENSG00000070366	SMG6	100	96.887	Homo_sapiens
ENSUAMG00000025152	SMG6	85	55.276	ENSAPOG00000019448	smg6	74	55.417	Acanthochromis_polyacanthus
ENSUAMG00000025152	SMG6	100	98.843	ENSAMEG00000007632	SMG6	100	98.659	Ailuropoda_melanoleuca
ENSUAMG00000025152	SMG6	74	59.945	ENSACIG00000012997	smg6	78	55.087	Amphilophus_citrinellus
ENSUAMG00000025152	SMG6	85	55.170	ENSAOCG00000002630	smg6	74	55.261	Amphiprion_ocellaris
ENSUAMG00000025152	SMG6	85	55.328	ENSAPEG00000019101	smg6	74	55.339	Amphiprion_percula
ENSUAMG00000025152	SMG6	85	55.191	ENSATEG00000006483	smg6	73	55.401	Anabas_testudineus
ENSUAMG00000025152	SMG6	87	57.699	ENSACAG00000011783	SMG6	99	58.537	Anolis_carolinensis
ENSUAMG00000025152	SMG6	100	93.300	ENSANAG00000035760	SMG6	100	93.319	Aotus_nancymaae
ENSUAMG00000025152	SMG6	73	59.174	ENSACLG00000005288	smg6	80	55.172	Astatotilapia_calliptera
ENSUAMG00000025152	SMG6	70	63.078	ENSAMXG00000017326	smg6	99	50.938	Astyanax_mexicanus
ENSUAMG00000025152	SMG6	100	94.946	ENSBTAG00000000267	SMG6	100	94.986	Bos_taurus
ENSUAMG00000025152	SMG6	100	93.006	ENSCJAG00000001820	SMG6	100	92.963	Callithrix_jacchus
ENSUAMG00000025152	SMG6	100	96.963	ENSCAFG00000019260	SMG6	100	96.963	Canis_familiaris
ENSUAMG00000025152	SMG6	100	96.963	ENSCAFG00020009770	SMG6	100	96.963	Canis_lupus_dingo
ENSUAMG00000025152	SMG6	100	94.492	ENSCHIG00000021998	SMG6	100	94.562	Capra_hircus
ENSUAMG00000025152	SMG6	100	92.867	ENSTSYG00000003406	SMG6	100	97.082	Carlito_syrichta
ENSUAMG00000025152	SMG6	100	77.698	ENSCAPG00000016197	SMG6	99	83.721	Cavia_aperea
ENSUAMG00000025152	SMG6	100	90.443	ENSCPOG00000014878	SMG6	100	91.005	Cavia_porcellus
ENSUAMG00000025152	SMG6	100	93.300	ENSCCAG00000035801	SMG6	100	93.319	Cebus_capucinus
ENSUAMG00000025152	SMG6	100	93.300	ENSCATG00000031956	SMG6	100	93.319	Cercocebus_atys
ENSUAMG00000025152	SMG6	100	92.435	ENSCLAG00000006748	SMG6	100	92.968	Chinchilla_lanigera
ENSUAMG00000025152	SMG6	100	93.732	ENSCSAG00000013800	SMG6	100	93.671	Chlorocebus_sabaeus
ENSUAMG00000025152	SMG6	52	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSUAMG00000025152	SMG6	100	72.779	ENSCPBG00000020369	SMG6	100	73.181	Chrysemys_picta_bellii
ENSUAMG00000025152	SMG6	100	93.372	ENSCANG00000031764	SMG6	100	96.498	Colobus_angolensis_palliatus
ENSUAMG00000025152	SMG6	55	88.875	ENSCGRG00001019595	Smg6	100	88.875	Cricetulus_griseus_chok1gshd
ENSUAMG00000025152	SMG6	100	85.303	ENSCGRG00000007782	Smg6	99	85.519	Cricetulus_griseus_crigri
ENSUAMG00000025152	SMG6	88	54.167	ENSCSEG00000012757	smg6	81	53.994	Cynoglossus_semilaevis
ENSUAMG00000025152	SMG6	74	57.532	ENSCVAG00000012789	smg6	74	54.105	Cyprinodon_variegatus
ENSUAMG00000025152	SMG6	100	50.538	ENSDARG00000100481	smg6	100	51.008	Danio_rerio
ENSUAMG00000025152	SMG6	100	93.588	ENSDNOG00000048283	SMG6	100	93.530	Dasypus_novemcinctus
ENSUAMG00000025152	SMG6	100	89.356	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSUAMG00000025152	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSUAMG00000025152	SMG6	74	50.146	ENSEBUG00000005059	smg6	71	50.194	Eptatretus_burgeri
ENSUAMG00000025152	SMG6	99	96.181	ENSEASG00005009318	SMG6	99	96.181	Equus_asinus_asinus
ENSUAMG00000025152	SMG6	99	95.898	ENSECAG00000006519	SMG6	99	95.898	Equus_caballus
ENSUAMG00000025152	SMG6	100	83.098	ENSEEUG00000003493	SMG6	100	83.663	Erinaceus_europaeus
ENSUAMG00000025152	SMG6	73	59.982	ENSELUG00000005934	smg6	67	56.535	Esox_lucius
ENSUAMG00000025152	SMG6	100	97.599	ENSFCAG00000028817	SMG6	100	97.599	Felis_catus
ENSUAMG00000025152	SMG6	100	72.598	ENSFALG00000006538	SMG6	99	72.669	Ficedula_albicollis
ENSUAMG00000025152	SMG6	100	91.715	ENSFDAG00000015106	SMG6	100	92.264	Fukomys_damarensis
ENSUAMG00000025152	SMG6	85	53.064	ENSFHEG00000013282	smg6	75	53.535	Fundulus_heteroclitus
ENSUAMG00000025152	SMG6	54	69.159	ENSGMOG00000019077	smg6	58	69.159	Gadus_morhua
ENSUAMG00000025152	SMG6	100	72.431	ENSGALG00000003108	SMG6	98	72.199	Gallus_gallus
ENSUAMG00000025152	SMG6	85	53.678	ENSGAFG00000000379	smg6	74	54.020	Gambusia_affinis
ENSUAMG00000025152	SMG6	93	53.755	ENSGACG00000020521	smg6	99	53.875	Gasterosteus_aculeatus
ENSUAMG00000025152	SMG6	100	72.424	ENSGAGG00000025617	SMG6	99	72.992	Gopherus_agassizii
ENSUAMG00000025152	SMG6	100	93.948	ENSGGOG00000017156	SMG6	100	93.952	Gorilla_gorilla
ENSUAMG00000025152	SMG6	73	59.469	ENSHBUG00000021311	smg6	74	55.234	Haplochromis_burtoni
ENSUAMG00000025152	SMG6	100	91.511	ENSHGLG00000012882	SMG6	100	92.065	Heterocephalus_glaber_female
ENSUAMG00000025152	SMG6	100	91.583	ENSHGLG00100017815	SMG6	100	92.135	Heterocephalus_glaber_male
ENSUAMG00000025152	SMG6	73	58.840	ENSHCOG00000008761	smg6	97	53.890	Hippocampus_comes
ENSUAMG00000025152	SMG6	87	54.710	ENSIPUG00000012493	smg6	76	54.988	Ictalurus_punctatus
ENSUAMG00000025152	SMG6	100	94.164	ENSSTOG00000028127	SMG6	100	94.163	Ictidomys_tridecemlineatus
ENSUAMG00000025152	SMG6	79	89.554	ENSJJAG00000015367	Smg6	95	87.598	Jaculus_jaculus
ENSUAMG00000025152	SMG6	80	55.178	ENSKMAG00000000279	smg6	75	54.482	Kryptolebias_marmoratus
ENSUAMG00000025152	SMG6	56	58.758	ENSLACG00000000806	-	98	59.876	Latimeria_chalumnae
ENSUAMG00000025152	SMG6	75	65.295	ENSLOCG00000006448	smg6	99	55.301	Lepisosteus_oculatus
ENSUAMG00000025152	SMG6	100	93.038	ENSLAFG00000001261	SMG6	100	93.108	Loxodonta_africana
ENSUAMG00000025152	SMG6	100	93.804	ENSMFAG00000003394	SMG6	100	93.812	Macaca_fascicularis
ENSUAMG00000025152	SMG6	100	93.732	ENSMMUG00000023161	SMG6	100	93.741	Macaca_mulatta
ENSUAMG00000025152	SMG6	100	88.640	ENSMNEG00000044592	SMG6	100	88.710	Macaca_nemestrina
ENSUAMG00000025152	SMG6	95	96.449	ENSMLEG00000029353	SMG6	99	96.636	Mandrillus_leucophaeus
ENSUAMG00000025152	SMG6	85	55.763	ENSMAMG00000020119	smg6	79	56.162	Mastacembelus_armatus
ENSUAMG00000025152	SMG6	73	59.467	ENSMZEG00005024736	smg6	74	54.874	Maylandia_zebra
ENSUAMG00000025152	SMG6	73	67.502	ENSMGAG00000005401	-	99	66.573	Meleagris_gallopavo
ENSUAMG00000025152	SMG6	100	95.101	ENSMICG00000012913	SMG6	100	95.077	Microcebus_murinus
ENSUAMG00000025152	SMG6	100	47.494	ENSMMOG00000010883	smg6	100	47.955	Mola_mola
ENSUAMG00000025152	SMG6	100	86.628	ENSMODG00000010622	SMG6	100	86.526	Monodelphis_domestica
ENSUAMG00000025152	SMG6	85	54.849	ENSMALG00000001106	smg6	73	55.383	Monopterus_albus
ENSUAMG00000025152	SMG6	100	91.427	MGP_CAROLIEiJ_G0016729	Smg6	100	91.491	Mus_caroli
ENSUAMG00000025152	SMG6	100	91.427	ENSMUSG00000038290	Smg6	100	91.491	Mus_musculus
ENSUAMG00000025152	SMG6	100	91.348	MGP_PahariEiJ_G0017866	Smg6	100	91.344	Mus_pahari
ENSUAMG00000025152	SMG6	100	91.354	MGP_SPRETEiJ_G0017572	Smg6	100	91.421	Mus_spretus
ENSUAMG00000025152	SMG6	100	97.599	ENSMPUG00000013046	SMG6	100	97.599	Mustela_putorius_furo
ENSUAMG00000025152	SMG6	100	95.090	ENSMLUG00000005739	SMG6	100	94.845	Myotis_lucifugus
ENSUAMG00000025152	SMG6	100	91.204	ENSNGAG00000007287	Smg6	99	91.276	Nannospalax_galili
ENSUAMG00000025152	SMG6	73	59.519	ENSNBRG00000009511	smg6	81	54.254	Neolamprologus_brichardi
ENSUAMG00000025152	SMG6	100	93.732	ENSNLEG00000017171	SMG6	100	97.082	Nomascus_leucogenys
ENSUAMG00000025152	SMG6	100	82.818	ENSMEUG00000015804	SMG6	99	82.818	Notamacropus_eugenii
ENSUAMG00000025152	SMG6	59	98.485	ENSOPRG00000000579	SMG6	85	98.485	Ochotona_princeps
ENSUAMG00000025152	SMG6	100	85.755	ENSODEG00000008038	SMG6	100	85.885	Octodon_degus
ENSUAMG00000025152	SMG6	100	50.594	ENSONIG00000005594	smg6	100	51.355	Oreochromis_niloticus
ENSUAMG00000025152	SMG6	100	92.950	ENSOCUG00000013018	SMG6	100	93.118	Oryctolagus_cuniculus
ENSUAMG00000025152	SMG6	85	54.203	ENSORLG00000003317	smg6	74	55.102	Oryzias_latipes
ENSUAMG00000025152	SMG6	85	54.367	ENSORLG00020015343	smg6	74	54.859	Oryzias_latipes_hni
ENSUAMG00000025152	SMG6	85	54.317	ENSORLG00015020454	smg6	74	54.808	Oryzias_latipes_hsok
ENSUAMG00000025152	SMG6	85	53.470	ENSOMEG00000010838	smg6	75	53.901	Oryzias_melastigma
ENSUAMG00000025152	SMG6	100	94.024	ENSOGAG00000004483	SMG6	100	94.027	Otolemur_garnettii
ENSUAMG00000025152	SMG6	100	94.368	ENSOARG00000015076	SMG6	100	94.440	Ovis_aries
ENSUAMG00000025152	SMG6	100	93.804	ENSPPAG00000043296	SMG6	100	93.812	Pan_paniscus
ENSUAMG00000025152	SMG6	100	97.669	ENSPPRG00000014581	SMG6	100	97.669	Panthera_pardus
ENSUAMG00000025152	SMG6	100	97.617	ENSPTIG00000008925	SMG6	100	98.833	Panthera_tigris_altaica
ENSUAMG00000025152	SMG6	100	93.732	ENSPTRG00000008544	SMG6	100	96.887	Pan_troglodytes
ENSUAMG00000025152	SMG6	100	93.588	ENSPANG00000024588	SMG6	100	93.601	Papio_anubis
ENSUAMG00000025152	SMG6	90	71.059	ENSPSIG00000006660	SMG6	96	71.137	Pelodiscus_sinensis
ENSUAMG00000025152	SMG6	100	49.474	ENSPMGG00000000844	smg6	100	60.127	Periophthalmus_magnuspinnatus
ENSUAMG00000025152	SMG6	100	92.435	ENSPEMG00000020707	Smg6	100	92.475	Peromyscus_maniculatus_bairdii
ENSUAMG00000025152	SMG6	100	51.882	ENSPFOG00000012035	smg6	100	51.598	Poecilia_formosa
ENSUAMG00000025152	SMG6	79	56.496	ENSPLAG00000017660	smg6	74	53.948	Poecilia_latipinna
ENSUAMG00000025152	SMG6	79	56.399	ENSPMEG00000000258	smg6	74	54.225	Poecilia_mexicana
ENSUAMG00000025152	SMG6	85	54.232	ENSPREG00000010066	smg6	74	54.069	Poecilia_reticulata
ENSUAMG00000025152	SMG6	100	88.561	ENSPPYG00000007790	SMG6	100	88.632	Pongo_abelii
ENSUAMG00000025152	SMG6	100	88.748	ENSPCAG00000000552	SMG6	100	88.819	Procavia_capensis
ENSUAMG00000025152	SMG6	100	94.524	ENSPCOG00000020925	SMG6	100	94.515	Propithecus_coquereli
ENSUAMG00000025152	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSUAMG00000025152	SMG6	73	61.796	ENSPNYG00000024151	smg6	79	57.004	Pundamilia_nyererei
ENSUAMG00000025152	SMG6	89	51.207	ENSPNAG00000015480	smg6	91	48.292	Pygocentrus_nattereri
ENSUAMG00000025152	SMG6	100	91.282	ENSRNOG00000003041	Smg6	100	91.842	Rattus_norvegicus
ENSUAMG00000025152	SMG6	100	92.867	ENSRBIG00000024746	SMG6	100	93.390	Rhinopithecus_bieti
ENSUAMG00000025152	SMG6	100	92.939	ENSRROG00000030423	SMG6	100	96.109	Rhinopithecus_roxellana
ENSUAMG00000025152	SMG6	100	93.156	ENSSBOG00000022518	SMG6	100	91.491	Saimiri_boliviensis_boliviensis
ENSUAMG00000025152	SMG6	100	86.341	ENSSHAG00000010045	SMG6	98	86.341	Sarcophilus_harrisii
ENSUAMG00000025152	SMG6	74	62.581	ENSSFOG00015005436	smg6	70	57.717	Scleropages_formosus
ENSUAMG00000025152	SMG6	85	55.374	ENSSMAG00000019777	smg6	73	54.871	Scophthalmus_maximus
ENSUAMG00000025152	SMG6	91	53.018	ENSSDUG00000016412	smg6	80	53.030	Seriola_dumerili
ENSUAMG00000025152	SMG6	88	52.141	ENSSLDG00000020747	smg6	83	52.090	Seriola_lalandi_dorsalis
ENSUAMG00000025152	SMG6	99	70.899	ENSSPUG00000007152	SMG6	99	70.740	Sphenodon_punctatus
ENSUAMG00000025152	SMG6	73	59.070	ENSSPAG00000015633	smg6	74	55.148	Stegastes_partitus
ENSUAMG00000025152	SMG6	100	94.919	ENSSSCG00000017826	SMG6	100	94.989	Sus_scrofa
ENSUAMG00000025152	SMG6	100	72.969	ENSTGUG00000005836	SMG6	100	72.861	Taeniopygia_guttata
ENSUAMG00000025152	SMG6	85	54.675	ENSTRUG00000000358	smg6	81	55.087	Takifugu_rubripes
ENSUAMG00000025152	SMG6	100	50.066	ENSTNIG00000016164	smg6	100	50.461	Tetraodon_nigroviridis
ENSUAMG00000025152	SMG6	100	89.100	ENSTBEG00000011424	SMG6	100	89.170	Tupaia_belangeri
ENSUAMG00000025152	SMG6	91	91.855	ENSTTRG00000001175	SMG6	91	92.006	Tursiops_truncatus
ENSUAMG00000025152	SMG6	100	99.566	ENSUMAG00000009306	SMG6	100	99.566	Ursus_maritimus
ENSUAMG00000025152	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSUAMG00000025152	SMG6	100	96.822	ENSVVUG00000021727	SMG6	100	96.822	Vulpes_vulpes
ENSUAMG00000025152	SMG6	100	59.364	ENSXETG00000023799	SMG6	99	59.152	Xenopus_tropicalis
ENSUAMG00000025152	SMG6	85	55.004	ENSXCOG00000009867	smg6	74	55.104	Xiphophorus_couchianus
ENSUAMG00000025152	SMG6	85	54.531	ENSXMAG00000010321	smg6	74	54.079	Xiphophorus_maculatus