EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000000337 (Gene tree)
Gene ID: 103659464
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 53457 bases
Position: chrKK498562.1:2649210-2702666
Accession: 103659464
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000001271	Rif1_N	PF12231.8	1.9e-68	1	1
ENSUMAP00000001261	Rif1_N	PF12231.8	2e-68	1	1
ENSUMAP00000001225	Rif1_N	PF12231.8	2e-68	1	1
ENSUMAP00000001256	Rif1_N	PF12231.8	2e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000001590	RIF1-203	7344	-	ENSUMAP00000001261	2447 (aa)	-	-
ENSUMAT00000001585	RIF1-202	7422	-	ENSUMAP00000001256	2473 (aa)	-	-
ENSUMAT00000001551	RIF1-201	7422	-	ENSUMAP00000001225	2473 (aa)	XP_008685201	UPI0004E00D63
ENSUMAT00000001601	RIF1-204	7233	-	ENSUMAP00000001271	2410 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000000337's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000000337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000000337	RIF1	99	88.824	ENSG00000080345	RIF1	97	89.538	Homo_sapiens
ENSUMAG00000000337	RIF1	99	96.564	ENSAMEG00000008461	RIF1	100	96.564	Ailuropoda_melanoleuca
ENSUMAG00000000337	RIF1	67	52.354	ENSACIG00000017765	rif1	70	49.496	Amphilophus_citrinellus
ENSUMAG00000000337	RIF1	64	49.406	ENSAOCG00000017231	rif1	65	49.406	Amphiprion_ocellaris
ENSUMAG00000000337	RIF1	62	53.567	ENSAPEG00000013228	rif1	63	51.697	Amphiprion_percula
ENSUMAG00000000337	RIF1	65	48.065	ENSATEG00000022887	rif1	68	48.065	Anabas_testudineus
ENSUMAG00000000337	RIF1	84	65.875	ENSAPLG00000007092	RIF1	95	65.875	Anas_platyrhynchos
ENSUMAG00000000337	RIF1	84	57.143	ENSACAG00000003714	RIF1	90	57.143	Anolis_carolinensis
ENSUMAG00000000337	RIF1	100	79.340	ENSANAG00000024840	RIF1	96	88.058	Aotus_nancymaae
ENSUMAG00000000337	RIF1	51	50.868	ENSAMXG00000010910	rif1	52	51.056	Astyanax_mexicanus
ENSUMAG00000000337	RIF1	93	91.667	ENSBTAG00000021020	RIF1	100	83.154	Bos_taurus
ENSUMAG00000000337	RIF1	100	78.655	ENSCJAG00000003138	RIF1	100	78.695	Callithrix_jacchus
ENSUMAG00000000337	RIF1	99	93.385	ENSCAFG00000005670	RIF1	93	93.385	Canis_familiaris
ENSUMAG00000000337	RIF1	99	93.385	ENSCAFG00020016401	RIF1	96	93.385	Canis_lupus_dingo
ENSUMAG00000000337	RIF1	100	82.614	ENSCHIG00000020327	RIF1	100	82.614	Capra_hircus
ENSUMAG00000000337	RIF1	99	78.163	ENSTSYG00000008861	RIF1	100	78.203	Carlito_syrichta
ENSUMAG00000000337	RIF1	78	76.755	ENSCAPG00000008957	RIF1	96	76.755	Cavia_aperea
ENSUMAG00000000337	RIF1	99	70.780	ENSCPOG00000037898	RIF1	99	70.941	Cavia_porcellus
ENSUMAG00000000337	RIF1	99	84.645	ENSCCAG00000024760	RIF1	96	84.645	Cebus_capucinus
ENSUMAG00000000337	RIF1	100	80.379	ENSCATG00000033353	RIF1	100	80.379	Cercocebus_atys
ENSUMAG00000000337	RIF1	96	73.871	ENSCLAG00000001517	RIF1	99	73.871	Chinchilla_lanigera
ENSUMAG00000000337	RIF1	100	80.338	ENSCSAG00000016089	RIF1	100	80.338	Chlorocebus_sabaeus
ENSUMAG00000000337	RIF1	97	74.931	ENSCHOG00000007187	RIF1	97	74.931	Choloepus_hoffmanni
ENSUMAG00000000337	RIF1	91	68.421	ENSCPBG00000025885	RIF1	98	68.975	Chrysemys_picta_bellii
ENSUMAG00000000337	RIF1	100	79.252	ENSCANG00000028962	RIF1	100	79.958	Colobus_angolensis_palliatus
ENSUMAG00000000337	RIF1	99	69.775	ENSCGRG00001024589	Rif1	100	69.936	Cricetulus_griseus_chok1gshd
ENSUMAG00000000337	RIF1	99	70.818	ENSCGRG00000010713	Rif1	100	70.981	Cricetulus_griseus_crigri
ENSUMAG00000000337	RIF1	60	55.039	ENSCSEG00000003945	rif1	65	55.039	Cynoglossus_semilaevis
ENSUMAG00000000337	RIF1	63	47.941	ENSCVAG00000022479	rif1	67	47.941	Cyprinodon_variegatus
ENSUMAG00000000337	RIF1	99	77.256	ENSDNOG00000011194	RIF1	97	77.256	Dasypus_novemcinctus
ENSUMAG00000000337	RIF1	93	75.049	ENSETEG00000012421	RIF1	92	73.237	Echinops_telfairi
ENSUMAG00000000337	RIF1	99	91.918	ENSEASG00005023434	RIF1	100	90.078	Equus_asinus_asinus
ENSUMAG00000000337	RIF1	99	91.431	ENSECAG00000012679	RIF1	100	91.843	Equus_caballus
ENSUMAG00000000337	RIF1	64	48.857	ENSELUG00000006826	rif1	58	48.857	Esox_lucius
ENSUMAG00000000337	RIF1	100	88.840	ENSFCAG00000029742	RIF1	100	88.880	Felis_catus
ENSUMAG00000000337	RIF1	78	64.329	ENSFALG00000013874	RIF1	91	64.939	Ficedula_albicollis
ENSUMAG00000000337	RIF1	99	85.798	ENSFDAG00000006538	RIF1	96	85.798	Fukomys_damarensis
ENSUMAG00000000337	RIF1	62	50.244	ENSFHEG00000013721	rif1	78	47.334	Fundulus_heteroclitus
ENSUMAG00000000337	RIF1	52	55.714	ENSGMOG00000003517	rif1	79	55.714	Gadus_morhua
ENSUMAG00000000337	RIF1	79	64.897	ENSGALG00000012484	RIF1	91	65.192	Gallus_gallus
ENSUMAG00000000337	RIF1	59	53.822	ENSGAFG00000017196	rif1	66	54.110	Gambusia_affinis
ENSUMAG00000000337	RIF1	59	55.833	ENSGACG00000008579	rif1	65	55.328	Gasterosteus_aculeatus
ENSUMAG00000000337	RIF1	78	67.797	ENSGAGG00000012595	RIF1	100	66.578	Gopherus_agassizii
ENSUMAG00000000337	RIF1	90	89.000	ENSGGOG00000040178	RIF1	96	89.127	Gorilla_gorilla
ENSUMAG00000000337	RIF1	73	54.902	ENSHBUG00000007125	rif1	66	54.902	Haplochromis_burtoni
ENSUMAG00000000337	RIF1	95	74.904	ENSHGLG00100009807	RIF1	99	74.904	Heterocephalus_glaber_male
ENSUMAG00000000337	RIF1	63	48.521	ENSHCOG00000015943	rif1	60	48.485	Hippocampus_comes
ENSUMAG00000000337	RIF1	62	51.582	ENSIPUG00000021703	rif1	64	51.652	Ictalurus_punctatus
ENSUMAG00000000337	RIF1	99	86.699	ENSSTOG00000020712	RIF1	100	77.965	Ictidomys_tridecemlineatus
ENSUMAG00000000337	RIF1	99	69.577	ENSJJAG00000023000	Rif1	100	69.738	Jaculus_jaculus
ENSUMAG00000000337	RIF1	63	49.528	ENSKMAG00000002852	rif1	57	51.925	Kryptolebias_marmoratus
ENSUMAG00000000337	RIF1	64	49.843	ENSLBEG00000023196	rif1	60	49.843	Labrus_bergylta
ENSUMAG00000000337	RIF1	85	62.941	ENSLACG00000005425	RIF1	89	62.941	Latimeria_chalumnae
ENSUMAG00000000337	RIF1	70	55.630	ENSLOCG00000002657	rif1	86	53.094	Lepisosteus_oculatus
ENSUMAG00000000337	RIF1	99	86.368	ENSLAFG00000009796	RIF1	96	86.368	Loxodonta_africana
ENSUMAG00000000337	RIF1	100	80.258	ENSMFAG00000032233	RIF1	100	80.258	Macaca_fascicularis
ENSUMAG00000000337	RIF1	100	80.258	ENSMMUG00000008611	RIF1	100	80.258	Macaca_mulatta
ENSUMAG00000000337	RIF1	100	80.258	ENSMNEG00000031616	RIF1	100	80.258	Macaca_nemestrina
ENSUMAG00000000337	RIF1	100	80.419	ENSMLEG00000042945	RIF1	100	80.419	Mandrillus_leucophaeus
ENSUMAG00000000337	RIF1	57	50.679	ENSMAMG00000001745	rif1	59	50.679	Mastacembelus_armatus
ENSUMAG00000000337	RIF1	86	42.239	ENSMZEG00005020920	rif1	81	50.795	Maylandia_zebra
ENSUMAG00000000337	RIF1	84	61.473	ENSMGAG00000012732	RIF1	91	61.756	Meleagris_gallopavo
ENSUMAG00000000337	RIF1	95	85.794	ENSMAUG00000013158	Rif1	99	85.794	Mesocricetus_auratus
ENSUMAG00000000337	RIF1	100	82.085	ENSMICG00000046127	RIF1	100	82.166	Microcebus_murinus
ENSUMAG00000000337	RIF1	99	69.243	ENSMOCG00000009381	Rif1	100	69.243	Microtus_ochrogaster
ENSUMAG00000000337	RIF1	62	50.161	ENSMMOG00000006519	rif1	64	50.161	Mola_mola
ENSUMAG00000000337	RIF1	99	74.234	ENSMODG00000003703	RIF1	97	74.234	Monodelphis_domestica
ENSUMAG00000000337	RIF1	63	48.485	ENSMALG00000016759	rif1	72	48.644	Monopterus_albus
ENSUMAG00000000337	RIF1	98	83.350	MGP_CAROLIEiJ_G0023555	Rif1	97	82.229	Mus_caroli
ENSUMAG00000000337	RIF1	99	69.249	ENSMUSG00000036202	Rif1	100	69.141	Mus_musculus
ENSUMAG00000000337	RIF1	99	68.277	MGP_PahariEiJ_G0025006	Rif1	100	68.277	Mus_pahari
ENSUMAG00000000337	RIF1	98	83.645	MGP_SPRETEiJ_G0024476	Rif1	96	83.382	Mus_spretus
ENSUMAG00000000337	RIF1	99	94.844	ENSMPUG00000000371	RIF1	100	90.968	Mustela_putorius_furo
ENSUMAG00000000337	RIF1	88	90.181	ENSMLUG00000003376	RIF1	96	89.213	Myotis_lucifugus
ENSUMAG00000000337	RIF1	100	72.852	ENSNGAG00000009268	Rif1	100	72.933	Nannospalax_galili
ENSUMAG00000000337	RIF1	73	49.799	ENSNBRG00000014257	rif1	80	49.253	Neolamprologus_brichardi
ENSUMAG00000000337	RIF1	99	87.404	ENSNLEG00000010955	RIF1	96	87.404	Nomascus_leucogenys
ENSUMAG00000000337	RIF1	77	79.018	ENSMEUG00000007601	-	84	79.018	Notamacropus_eugenii
ENSUMAG00000000337	RIF1	99	71.515	ENSODEG00000003950	RIF1	99	71.796	Octodon_degus
ENSUMAG00000000337	RIF1	68	52.549	ENSONIG00000013657	rif1	71	49.613	Oreochromis_niloticus
ENSUMAG00000000337	RIF1	89	66.788	ENSOANG00000006078	-	92	66.788	Ornithorhynchus_anatinus
ENSUMAG00000000337	RIF1	99	85.798	ENSOCUG00000017435	RIF1	96	86.284	Oryctolagus_cuniculus
ENSUMAG00000000337	RIF1	63	47.623	ENSORLG00020001302	rif1	68	47.615	Oryzias_latipes_hni
ENSUMAG00000000337	RIF1	63	47.537	ENSORLG00015000009	rif1	68	47.615	Oryzias_latipes_hsok
ENSUMAG00000000337	RIF1	61	48.716	ENSOMEG00000021513	rif1	66	48.724	Oryzias_melastigma
ENSUMAG00000000337	RIF1	99	86.758	ENSOGAG00000006141	RIF1	96	86.758	Otolemur_garnettii
ENSUMAG00000000337	RIF1	100	82.984	ENSOARG00000008930	RIF1	100	82.984	Ovis_aries
ENSUMAG00000000337	RIF1	100	80.153	ENSPPAG00000023754	RIF1	100	80.193	Pan_paniscus
ENSUMAG00000000337	RIF1	99	94.341	ENSPPRG00000003618	RIF1	96	94.341	Panthera_pardus
ENSUMAG00000000337	RIF1	99	94.439	ENSPTIG00000020652	RIF1	96	94.439	Panthera_tigris_altaica
ENSUMAG00000000337	RIF1	99	88.630	ENSPTRG00000012534	RIF1	100	80.233	Pan_troglodytes
ENSUMAG00000000337	RIF1	100	80.177	ENSPANG00000008525	RIF1	100	80.177	Papio_anubis
ENSUMAG00000000337	RIF1	62	52.410	ENSPKIG00000004267	rif1	67	52.410	Paramormyrops_kingsleyae
ENSUMAG00000000337	RIF1	69	44.444	ENSPMGG00000016141	rif1	85	43.799	Periophthalmus_magnuspinnatus
ENSUMAG00000000337	RIF1	99	71.073	ENSPEMG00000000446	Rif1	99	71.155	Peromyscus_maniculatus_bairdii
ENSUMAG00000000337	RIF1	99	59.648	ENSPCIG00000009185	RIF1	99	60.056	Phascolarctos_cinereus
ENSUMAG00000000337	RIF1	56	51.759	ENSPFOG00000000554	-	64	51.759	Poecilia_formosa
ENSUMAG00000000337	RIF1	63	51.084	ENSPFOG00000017804	rif1	67	51.165	Poecilia_formosa
ENSUMAG00000000337	RIF1	63	51.249	ENSPLAG00000017945	rif1	69	51.249	Poecilia_latipinna
ENSUMAG00000000337	RIF1	54	62.766	ENSPREG00000018052	rif1	65	53.993	Poecilia_reticulata
ENSUMAG00000000337	RIF1	100	80.354	ENSPPYG00000012846	RIF1	100	80.395	Pongo_abelii
ENSUMAG00000000337	RIF1	82	88.298	ENSPCAG00000009032	RIF1	82	88.298	Procavia_capensis
ENSUMAG00000000337	RIF1	100	82.199	ENSPCOG00000027888	RIF1	100	82.441	Propithecus_coquereli
ENSUMAG00000000337	RIF1	93	87.830	ENSPVAG00000014276	RIF1	95	87.830	Pteropus_vampyrus
ENSUMAG00000000337	RIF1	75	47.840	ENSPNYG00000012940	rif1	68	48.761	Pundamilia_nyererei
ENSUMAG00000000337	RIF1	62	53.871	ENSPNAG00000016685	rif1	64	53.871	Pygocentrus_nattereri
ENSUMAG00000000337	RIF1	99	68.220	ENSRNOG00000054901	Rif1	100	68.220	Rattus_norvegicus
ENSUMAG00000000337	RIF1	100	79.613	ENSRBIG00000003704	RIF1	100	79.654	Rhinopithecus_bieti
ENSUMAG00000000337	RIF1	100	80.540	ENSRROG00000028206	RIF1	100	80.540	Rhinopithecus_roxellana
ENSUMAG00000000337	RIF1	97	87.097	ENSSBOG00000029530	RIF1	100	87.097	Saimiri_boliviensis_boliviensis
ENSUMAG00000000337	RIF1	99	59.976	ENSSHAG00000018552	RIF1	100	59.614	Sarcophilus_harrisii
ENSUMAG00000000337	RIF1	62	52.946	ENSSFOG00015021539	rif1	69	52.946	Scleropages_formosus
ENSUMAG00000000337	RIF1	66	48.911	ENSSMAG00000011704	rif1	65	48.807	Scophthalmus_maximus
ENSUMAG00000000337	RIF1	73	50.605	ENSSDUG00000015632	rif1	82	50.000	Seriola_dumerili
ENSUMAG00000000337	RIF1	50	50.120	ENSSLDG00000019531	rif1	51	49.572	Seriola_lalandi_dorsalis
ENSUMAG00000000337	RIF1	63	84.068	ENSSARG00000007161	-	62	84.068	Sorex_araneus
ENSUMAG00000000337	RIF1	88	71.257	ENSSPUG00000003062	RIF1	96	71.257	Sphenodon_punctatus
ENSUMAG00000000337	RIF1	99	90.068	ENSSSCG00000016395	RIF1	96	90.068	Sus_scrofa
ENSUMAG00000000337	RIF1	63	49.123	ENSTRUG00000015808	rif1	69	49.123	Takifugu_rubripes
ENSUMAG00000000337	RIF1	63	51.515	ENSTNIG00000011538	rif1	68	51.515	Tetraodon_nigroviridis
ENSUMAG00000000337	RIF1	83	90.506	ENSTBEG00000016082	RIF1	82	90.506	Tupaia_belangeri
ENSUMAG00000000337	RIF1	99	90.078	ENSTTRG00000011190	RIF1	96	90.078	Tursiops_truncatus
ENSUMAG00000000337	RIF1	90	99.192	ENSUAMG00000026385	RIF1	99	99.192	Ursus_americanus
ENSUMAG00000000337	RIF1	100	81.396	ENSVPAG00000002162	RIF1	100	81.540	Vicugna_pacos
ENSUMAG00000000337	RIF1	99	93.385	ENSVVUG00000011293	RIF1	96	93.385	Vulpes_vulpes
ENSUMAG00000000337	RIF1	84	61.631	ENSXETG00000004530	rif1	84	61.631	Xenopus_tropicalis
ENSUMAG00000000337	RIF1	63	47.444	ENSXMAG00000000506	rif1	63	47.604	Xiphophorus_maculatus