EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000001983 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 169988 bases
Position: chrKK498672.1:1431043-1601030
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000002196	CMS1	PF14617.6	1.5e-32	1	1
ENSUMAP00000002201	CMS1	PF14617.6	1.8e-32	1	1
ENSUMAP00000002189	CMS1	PF14617.6	2.1e-32	1	1
ENSUMAP00000002196	DEAD	PF00270.29	3.5e-06	1	1
ENSUMAP00000002201	DEAD	PF00270.29	4.1e-06	1	1
ENSUMAP00000002189	DEAD	PF00270.29	4.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000002728	CMSS1-202	1012	-	ENSUMAP00000002196	259 (aa)	-	-
ENSUMAT00000002721	CMSS1-201	1097	-	ENSUMAP00000002189	278 (aa)	-	-
ENSUMAT00000002734	CMSS1-203	1617	-	ENSUMAP00000002201	276 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000001983's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000001983's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000001983	CMSS1	99	91.085	ENSG00000184220	CMSS1	99	93.827	Homo_sapiens
ENSUMAG00000001983	CMSS1	78	64.851	ENSAPOG00000010604	cmss1	82	64.851	Acanthochromis_polyacanthus
ENSUMAG00000001983	CMSS1	99	97.287	ENSAMEG00000004092	CMSS1	100	97.297	Ailuropoda_melanoleuca
ENSUMAG00000001983	CMSS1	78	54.950	ENSACIG00000021854	cmss1	100	49.064	Amphilophus_citrinellus
ENSUMAG00000001983	CMSS1	78	64.851	ENSAOCG00000013361	cmss1	70	64.851	Amphiprion_ocellaris
ENSUMAG00000001983	CMSS1	78	64.851	ENSAPEG00000005829	cmss1	70	64.851	Amphiprion_percula
ENSUMAG00000001983	CMSS1	87	62.281	ENSATEG00000008209	cmss1	96	51.803	Anabas_testudineus
ENSUMAG00000001983	CMSS1	88	68.261	ENSAPLG00000010542	CMSS1	100	68.261	Anas_platyrhynchos
ENSUMAG00000001983	CMSS1	99	62.879	ENSACAG00000011065	CMSS1	97	62.879	Anolis_carolinensis
ENSUMAG00000001983	CMSS1	99	89.961	ENSANAG00000023565	CMSS1	100	89.695	Aotus_nancymaae
ENSUMAG00000001983	CMSS1	78	61.386	ENSACLG00000027294	cmss1	69	61.386	Astatotilapia_calliptera
ENSUMAG00000001983	CMSS1	77	55.000	ENSAMXG00000002046	cmss1	82	53.086	Astyanax_mexicanus
ENSUMAG00000001983	CMSS1	100	87.681	ENSBTAG00000013663	CMSS1	100	87.681	Bos_taurus
ENSUMAG00000001983	CMSS1	99	89.189	ENSCJAG00000000610	CMSS1	99	89.575	Callithrix_jacchus
ENSUMAG00000001983	CMSS1	100	93.841	ENSCAFG00000009230	CMSS1	100	93.841	Canis_familiaris
ENSUMAG00000001983	CMSS1	99	93.798	ENSCAFG00020009464	-	95	93.436	Canis_lupus_dingo
ENSUMAG00000001983	CMSS1	90	87.124	ENSCAFG00020024156	-	77	83.333	Canis_lupus_dingo
ENSUMAG00000001983	CMSS1	99	89.494	ENSCHIG00000013003	CMSS1	100	88.406	Capra_hircus
ENSUMAG00000001983	CMSS1	100	88.406	ENSTSYG00000009266	CMSS1	100	88.406	Carlito_syrichta
ENSUMAG00000001983	CMSS1	86	73.362	ENSCAPG00000013584	CMSS1	100	72.926	Cavia_aperea
ENSUMAG00000001983	CMSS1	99	87.597	ENSCPOG00000014680	CMSS1	96	85.502	Cavia_porcellus
ENSUMAG00000001983	CMSS1	99	90.734	ENSCCAG00000034685	CMSS1	99	91.120	Cebus_capucinus
ENSUMAG00000001983	CMSS1	99	90.698	ENSCATG00000031980	CMSS1	99	91.085	Cercocebus_atys
ENSUMAG00000001983	CMSS1	88	95.197	ENSCLAG00000011241	CMSS1	98	95.197	Chinchilla_lanigera
ENSUMAG00000001983	CMSS1	94	92.213	ENSCSAG00000006024	CMSS1	99	92.213	Chlorocebus_sabaeus
ENSUMAG00000001983	CMSS1	99	70.428	ENSCHOG00000012098	CMSS1	94	70.270	Choloepus_hoffmanni
ENSUMAG00000001983	CMSS1	76	40.704	ENSCING00000014848	-	100	41.176	Ciona_intestinalis
ENSUMAG00000001983	CMSS1	99	90.310	ENSCANG00000031337	CMSS1	99	90.698	Colobus_angolensis_palliatus
ENSUMAG00000001983	CMSS1	98	81.961	ENSCGRG00001014305	Cmss1	93	81.081	Cricetulus_griseus_chok1gshd
ENSUMAG00000001983	CMSS1	98	82.353	ENSCGRG00000006722	Cmss1	99	82.353	Cricetulus_griseus_crigri
ENSUMAG00000001983	CMSS1	78	62.871	ENSCSEG00000004958	cmss1	69	62.871	Cynoglossus_semilaevis
ENSUMAG00000001983	CMSS1	78	61.386	ENSCVAG00000005039	cmss1	88	55.336	Cyprinodon_variegatus
ENSUMAG00000001983	CMSS1	87	51.948	ENSDARG00000112579	cmss1	84	50.407	Danio_rerio
ENSUMAG00000001983	CMSS1	99	87.259	ENSDNOG00000040418	CMSS1	95	86.090	Dasypus_novemcinctus
ENSUMAG00000001983	CMSS1	99	88.672	ENSDORG00000010461	Cmss1	93	88.417	Dipodomys_ordii
ENSUMAG00000001983	CMSS1	51	50.758	ENSEBUG00000002156	-	96	50.758	Eptatretus_burgeri
ENSUMAG00000001983	CMSS1	99	84.496	ENSEASG00005010966	CMSS1	99	92.694	Equus_asinus_asinus
ENSUMAG00000001983	CMSS1	100	89.961	ENSECAG00000015662	CMSS1	99	92.478	Equus_caballus
ENSUMAG00000001983	CMSS1	88	61.404	ENSEEUG00000007624	-	82	61.404	Erinaceus_europaeus
ENSUMAG00000001983	CMSS1	92	58.333	ENSELUG00000019459	cmss1	80	58.333	Esox_lucius
ENSUMAG00000001983	CMSS1	99	94.574	ENSFCAG00000044577	CMSS1	93	94.981	Felis_catus
ENSUMAG00000001983	CMSS1	92	63.180	ENSFALG00000005816	CMSS1	100	63.180	Ficedula_albicollis
ENSUMAG00000001983	CMSS1	88	92.105	ENSFDAG00000012577	CMSS1	100	92.105	Fukomys_damarensis
ENSUMAG00000001983	CMSS1	88	61.039	ENSFHEG00000012008	cmss1	95	61.039	Fundulus_heteroclitus
ENSUMAG00000001983	CMSS1	78	61.881	ENSGMOG00000016729	cmss1	72	61.881	Gadus_morhua
ENSUMAG00000001983	CMSS1	100	63.740	ENSGALG00000015267	CMSS1	100	63.985	Gallus_gallus
ENSUMAG00000001983	CMSS1	81	62.085	ENSGAFG00000021217	cmss1	77	63.366	Gambusia_affinis
ENSUMAG00000001983	CMSS1	78	56.436	ENSGACG00000002798	cmss1	72	56.436	Gasterosteus_aculeatus
ENSUMAG00000001983	CMSS1	96	68.952	ENSGAGG00000019861	CMSS1	96	68.952	Gopherus_agassizii
ENSUMAG00000001983	CMSS1	99	90.698	ENSGGOG00000014125	CMSS1	99	91.085	Gorilla_gorilla
ENSUMAG00000001983	CMSS1	78	61.386	ENSHBUG00000008431	cmss1	71	61.386	Haplochromis_burtoni
ENSUMAG00000001983	CMSS1	98	87.747	ENSHGLG00000019481	CMSS1	100	87.747	Heterocephalus_glaber_female
ENSUMAG00000001983	CMSS1	99	87.549	ENSHGLG00100010314	CMSS1	100	87.549	Heterocephalus_glaber_male
ENSUMAG00000001983	CMSS1	85	63.927	ENSHCOG00000003222	cmss1	74	63.927	Hippocampus_comes
ENSUMAG00000001983	CMSS1	85	55.656	ENSIPUG00000011591	cmss1	76	55.656	Ictalurus_punctatus
ENSUMAG00000001983	CMSS1	99	91.829	ENSSTOG00000019366	CMSS1	93	91.506	Ictidomys_tridecemlineatus
ENSUMAG00000001983	CMSS1	99	86.770	ENSJJAG00000014894	Cmss1	90	92.079	Jaculus_jaculus
ENSUMAG00000001983	CMSS1	78	54.950	ENSKMAG00000002390	cmss1	81	54.950	Kryptolebias_marmoratus
ENSUMAG00000001983	CMSS1	78	58.621	ENSLBEG00000006298	cmss1	83	58.621	Labrus_bergylta
ENSUMAG00000001983	CMSS1	88	65.652	ENSLACG00000009293	CMSS1	100	65.652	Latimeria_chalumnae
ENSUMAG00000001983	CMSS1	87	57.709	ENSLOCG00000009391	cmss1	95	52.015	Lepisosteus_oculatus
ENSUMAG00000001983	CMSS1	88	91.667	ENSLAFG00000017509	CMSS1	100	91.667	Loxodonta_africana
ENSUMAG00000001983	CMSS1	99	91.085	ENSMFAG00000045006	CMSS1	99	91.473	Macaca_fascicularis
ENSUMAG00000001983	CMSS1	99	91.085	ENSMMUG00000002939	CMSS1	98	93.636	Macaca_mulatta
ENSUMAG00000001983	CMSS1	99	90.698	ENSMNEG00000031315	CMSS1	99	91.085	Macaca_nemestrina
ENSUMAG00000001983	CMSS1	99	90.310	ENSMLEG00000033660	CMSS1	99	90.698	Mandrillus_leucophaeus
ENSUMAG00000001983	CMSS1	78	63.366	ENSMAMG00000017176	cmss1	81	59.322	Mastacembelus_armatus
ENSUMAG00000001983	CMSS1	78	61.386	ENSMZEG00005021886	cmss1	69	61.386	Maylandia_zebra
ENSUMAG00000001983	CMSS1	88	67.982	ENSMGAG00000014360	CMSS1	100	67.982	Meleagris_gallopavo
ENSUMAG00000001983	CMSS1	99	58.140	ENSMAUG00000020609	Cmss1	95	56.458	Mesocricetus_auratus
ENSUMAG00000001983	CMSS1	99	89.922	ENSMICG00000048977	CMSS1	99	90.310	Microcebus_murinus
ENSUMAG00000001983	CMSS1	99	82.422	ENSMOCG00000021937	Cmss1	93	82.239	Microtus_ochrogaster
ENSUMAG00000001983	CMSS1	78	62.376	ENSMMOG00000019794	cmss1	84	62.376	Mola_mola
ENSUMAG00000001983	CMSS1	98	75.984	ENSMODG00000002275	CMSS1	95	75.984	Monodelphis_domestica
ENSUMAG00000001983	CMSS1	78	64.356	ENSMALG00000004250	cmss1	69	64.356	Monopterus_albus
ENSUMAG00000001983	CMSS1	99	82.101	MGP_CAROLIEiJ_G0020824	Cmss1	93	81.923	Mus_caroli
ENSUMAG00000001983	CMSS1	99	83.268	ENSMUSG00000022748	Cmss1	93	83.077	Mus_musculus
ENSUMAG00000001983	CMSS1	99	81.323	MGP_PahariEiJ_G0016524	Cmss1	93	81.154	Mus_pahari
ENSUMAG00000001983	CMSS1	99	82.879	MGP_SPRETEiJ_G0021724	Cmss1	93	82.692	Mus_spretus
ENSUMAG00000001983	CMSS1	99	95.331	ENSMPUG00000011324	CMSS1	100	95.000	Mustela_putorius_furo
ENSUMAG00000001983	CMSS1	99	90.385	ENSMLUG00000001131	CMSS1	99	90.769	Myotis_lucifugus
ENSUMAG00000001983	CMSS1	100	85.328	ENSNGAG00000020316	Cmss1	93	85.714	Nannospalax_galili
ENSUMAG00000001983	CMSS1	78	60.891	ENSNBRG00000003095	cmss1	83	55.785	Neolamprologus_brichardi
ENSUMAG00000001983	CMSS1	99	92.248	ENSNLEG00000034172	CMSS1	99	92.636	Nomascus_leucogenys
ENSUMAG00000001983	CMSS1	88	67.544	ENSMEUG00000014505	CMSS1	100	67.544	Notamacropus_eugenii
ENSUMAG00000001983	CMSS1	99	90.272	ENSOPRG00000002986	CMSS1	92	90.272	Ochotona_princeps
ENSUMAG00000001983	CMSS1	99	72.763	ENSODEG00000009446	-	93	72.763	Octodon_degus
ENSUMAG00000001983	CMSS1	99	89.105	ENSODEG00000005226	-	93	88.803	Octodon_degus
ENSUMAG00000001983	CMSS1	99	84.766	ENSODEG00000003558	-	97	80.586	Octodon_degus
ENSUMAG00000001983	CMSS1	99	77.432	ENSODEG00000001853	-	96	75.655	Octodon_degus
ENSUMAG00000001983	CMSS1	78	61.386	ENSONIG00000006678	cmss1	77	61.386	Oreochromis_niloticus
ENSUMAG00000001983	CMSS1	99	72.308	ENSOANG00000007529	CMSS1	100	75.107	Ornithorhynchus_anatinus
ENSUMAG00000001983	CMSS1	99	90.698	ENSOCUG00000025366	CMSS1	100	89.130	Oryctolagus_cuniculus
ENSUMAG00000001983	CMSS1	90	60.256	ENSORLG00000020340	cmss1	81	57.959	Oryzias_latipes
ENSUMAG00000001983	CMSS1	88	54.148	ENSORLG00020012235	cmss1	85	57.921	Oryzias_latipes_hni
ENSUMAG00000001983	CMSS1	78	56.931	ENSORLG00015015551	cmss1	75	56.931	Oryzias_latipes_hsok
ENSUMAG00000001983	CMSS1	78	64.356	ENSOMEG00000012555	cmss1	81	60.256	Oryzias_melastigma
ENSUMAG00000001983	CMSS1	88	92.544	ENSOGAG00000002045	CMSS1	100	92.544	Otolemur_garnettii
ENSUMAG00000001983	CMSS1	99	89.535	ENSOARG00000017899	CMSS1	90	88.889	Ovis_aries
ENSUMAG00000001983	CMSS1	99	91.473	ENSPPAG00000038515	CMSS1	96	91.154	Pan_paniscus
ENSUMAG00000001983	CMSS1	99	94.574	ENSPPRG00000016767	CMSS1	93	94.981	Panthera_pardus
ENSUMAG00000001983	CMSS1	99	94.186	ENSPTIG00000018274	CMSS1	93	94.595	Panthera_tigris_altaica
ENSUMAG00000001983	CMSS1	99	90.698	ENSPTRG00000015157	CMSS1	99	91.803	Pan_troglodytes
ENSUMAG00000001983	CMSS1	99	87.984	ENSPANG00000019980	CMSS1	99	88.372	Papio_anubis
ENSUMAG00000001983	CMSS1	94	56.364	ENSPKIG00000012609	cmss1	100	55.720	Paramormyrops_kingsleyae
ENSUMAG00000001983	CMSS1	88	72.052	ENSPSIG00000003849	CMSS1	100	72.052	Pelodiscus_sinensis
ENSUMAG00000001983	CMSS1	78	61.576	ENSPMGG00000010286	cmss1	87	61.576	Periophthalmus_magnuspinnatus
ENSUMAG00000001983	CMSS1	99	84.766	ENSPEMG00000016384	Cmss1	93	84.556	Peromyscus_maniculatus_bairdii
ENSUMAG00000001983	CMSS1	79	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
ENSUMAG00000001983	CMSS1	95	76.923	ENSPCIG00000015656	CMSS1	94	76.923	Phascolarctos_cinereus
ENSUMAG00000001983	CMSS1	78	62.871	ENSPFOG00000016849	cmss1	71	62.871	Poecilia_formosa
ENSUMAG00000001983	CMSS1	78	62.376	ENSPLAG00000008323	cmss1	71	62.376	Poecilia_latipinna
ENSUMAG00000001983	CMSS1	78	62.871	ENSPMEG00000021020	cmss1	70	62.871	Poecilia_mexicana
ENSUMAG00000001983	CMSS1	90	58.475	ENSPREG00000007618	cmss1	69	62.376	Poecilia_reticulata
ENSUMAG00000001983	CMSS1	100	89.961	ENSPPYG00000013606	CMSS1	95	90.698	Pongo_abelii
ENSUMAG00000001983	CMSS1	99	90.698	ENSPCOG00000020035	CMSS1	100	90.421	Propithecus_coquereli
ENSUMAG00000001983	CMSS1	99	79.377	ENSPVAG00000017031	CMSS1	95	77.652	Pteropus_vampyrus
ENSUMAG00000001983	CMSS1	68	63.068	ENSPNYG00000013428	cmss1	65	63.068	Pundamilia_nyererei
ENSUMAG00000001983	CMSS1	92	53.086	ENSPNAG00000007912	cmss1	82	53.086	Pygocentrus_nattereri
ENSUMAG00000001983	CMSS1	99	82.101	ENSRNOG00000027888	Cmss1	100	81.538	Rattus_norvegicus
ENSUMAG00000001983	CMSS1	99	89.535	ENSRBIG00000037931	CMSS1	99	89.922	Rhinopithecus_bieti
ENSUMAG00000001983	CMSS1	99	89.535	ENSRROG00000042910	CMSS1	99	89.922	Rhinopithecus_roxellana
ENSUMAG00000001983	CMSS1	99	90.310	ENSSBOG00000030980	CMSS1	99	90.347	Saimiri_boliviensis_boliviensis
ENSUMAG00000001983	CMSS1	95	74.900	ENSSHAG00000009321	CMSS1	99	74.900	Sarcophilus_harrisii
ENSUMAG00000001983	CMSS1	87	61.304	ENSSFOG00015001509	cmss1	81	61.441	Scleropages_formosus
ENSUMAG00000001983	CMSS1	78	63.861	ENSSMAG00000001653	cmss1	69	63.861	Scophthalmus_maximus
ENSUMAG00000001983	CMSS1	87	60.699	ENSSDUG00000007719	cmss1	95	55.839	Seriola_dumerili
ENSUMAG00000001983	CMSS1	80	63.768	ENSSLDG00000012300	cmss1	93	53.778	Seriola_lalandi_dorsalis
ENSUMAG00000001983	CMSS1	99	75.194	ENSSARG00000003584	CMSS1	95	73.408	Sorex_araneus
ENSUMAG00000001983	CMSS1	87	70.354	ENSSPUG00000003865	CMSS1	100	70.354	Sphenodon_punctatus
ENSUMAG00000001983	CMSS1	94	54.478	ENSSPAG00000019182	cmss1	83	54.212	Stegastes_partitus
ENSUMAG00000001983	CMSS1	99	92.248	ENSSSCG00000011970	CMSS1	95	91.288	Sus_scrofa
ENSUMAG00000001983	CMSS1	88	65.939	ENSTGUG00000013635	CMSS1	100	65.939	Taeniopygia_guttata
ENSUMAG00000001983	CMSS1	78	61.881	ENSTRUG00000015265	cmss1	72	61.881	Takifugu_rubripes
ENSUMAG00000001983	CMSS1	78	55.446	ENSTNIG00000002880	cmss1	86	51.271	Tetraodon_nigroviridis
ENSUMAG00000001983	CMSS1	88	70.175	ENSTBEG00000016722	CMSS1	81	70.175	Tupaia_belangeri
ENSUMAG00000001983	CMSS1	99	89.147	ENSTTRG00000001562	CMSS1	93	89.575	Tursiops_truncatus
ENSUMAG00000001983	CMSS1	99	99.222	ENSUAMG00000024209	CMSS1	100	99.103	Ursus_americanus
ENSUMAG00000001983	CMSS1	88	76.316	ENSVPAG00000000263	CMSS1	82	76.316	Vicugna_pacos
ENSUMAG00000001983	CMSS1	87	92.920	ENSVVUG00000007776	-	89	92.920	Vulpes_vulpes
ENSUMAG00000001983	CMSS1	95	94.309	ENSVVUG00000021647	-	100	94.309	Vulpes_vulpes
ENSUMAG00000001983	CMSS1	90	60.169	ENSXETG00000011858	cmss1	84	60.169	Xenopus_tropicalis
ENSUMAG00000001983	CMSS1	80	62.500	ENSXCOG00000018724	cmss1	69	62.871	Xiphophorus_couchianus
ENSUMAG00000001983	CMSS1	80	62.500	ENSXMAG00000011243	cmss1	76	62.871	Xiphophorus_maculatus