EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000002017 (Gene tree)
Gene ID: 103669753
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 132463 bases
Position: chrKK498640.1:10255950-10388412
Accession: 103669753
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000002881	ResIII	PF04851.15	1.6e-08	1	1
ENSUMAP00000002858	ResIII	PF04851.15	9.2e-08	1	1
ENSUMAP00000002849	ResIII	PF04851.15	9.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000003556	CHD6-203	1452	-	ENSUMAP00000002877	483 (aa)	-	-
ENSUMAT00000003522	CHD6-201	8208	XM_008698095	ENSUMAP00000002849	2735 (aa)	XP_008696317	-
ENSUMAT00000003563	CHD6-204	1629	-	ENSUMAP00000002881	542 (aa)	-	-
ENSUMAT00000003531	CHD6-202	8142	-	ENSUMAP00000002858	2713 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000002017's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000002017's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000002017	CHD6	70	35.520	ENSUMAG00000004748	HELLS	84	38.017
ENSUMAG00000002017	CHD6	88	40.691	ENSUMAG00000024173	CHD5	59	40.404
ENSUMAG00000002017	CHD6	95	73.988	ENSUMAG00000004045	CHD8	75	67.519
ENSUMAG00000002017	CHD6	71	41.026	ENSUMAG00000015324	SMARCA5	50	42.077
ENSUMAG00000002017	CHD6	93	40.768	ENSUMAG00000005336	-	64	32.977
ENSUMAG00000002017	CHD6	88	40.275	ENSUMAG00000000083	-	61	33.800
ENSUMAG00000002017	CHD6	95	75.145	ENSUMAG00000010436	CHD7	86	69.309
ENSUMAG00000002017	CHD6	71	40.816	ENSUMAG00000004073	SMARCA1	73	40.498
ENSUMAG00000002017	CHD6	71	40.458	ENSUMAG00000009733	CHD1L	83	39.528
ENSUMAG00000002017	CHD6	96	73.512	ENSUMAG00000004043	CHD9	86	74.815

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000002017	CHD6	95	96.332	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSUMAG00000002017	CHD6	95	84.971	ENSAPOG00000013736	chd6	62	75.778	Acanthochromis_polyacanthus
ENSUMAG00000002017	CHD6	99	98.818	ENSAMEG00000009496	CHD6	99	98.818	Ailuropoda_melanoleuca
ENSUMAG00000002017	CHD6	95	84.586	ENSATEG00000005608	chd6	63	76.289	Anabas_testudineus
ENSUMAG00000002017	CHD6	95	92.085	ENSAPLG00000015592	CHD6	99	72.634	Anas_platyrhynchos
ENSUMAG00000002017	CHD6	94	83.041	ENSACAG00000006842	CHD6	90	76.940	Anolis_carolinensis
ENSUMAG00000002017	CHD6	100	97.985	ENSANAG00000037548	CHD6	100	97.985	Aotus_nancymaae
ENSUMAG00000002017	CHD6	94	86.160	ENSAMXG00000009576	chd6	77	70.463	Astyanax_mexicanus
ENSUMAG00000002017	CHD6	95	95.946	ENSBTAG00000005733	CHD6	99	89.886	Bos_taurus
ENSUMAG00000002017	CHD6	100	97.802	ENSCJAG00000017920	CHD6	100	97.802	Callithrix_jacchus
ENSUMAG00000002017	CHD6	99	96.638	ENSCAFG00000009236	CHD6	99	96.638	Canis_familiaris
ENSUMAG00000002017	CHD6	100	100.000	ENSCAFG00020012906	CHD6	100	100.000	Canis_lupus_dingo
ENSUMAG00000002017	CHD6	95	96.332	ENSCHIG00000017606	CHD6	99	89.886	Capra_hircus
ENSUMAG00000002017	CHD6	83	90.798	ENSTSYG00000014635	CHD6	100	90.798	Carlito_syrichta
ENSUMAG00000002017	CHD6	95	96.139	ENSCPOG00000015641	CHD6	99	90.543	Cavia_porcellus
ENSUMAG00000002017	CHD6	100	97.985	ENSCCAG00000036828	CHD6	100	97.985	Cebus_capucinus
ENSUMAG00000002017	CHD6	100	97.985	ENSCATG00000039248	CHD6	100	97.985	Cercocebus_atys
ENSUMAG00000002017	CHD6	95	95.946	ENSCLAG00000013743	CHD6	99	90.527	Chinchilla_lanigera
ENSUMAG00000002017	CHD6	95	96.332	ENSCSAG00000013997	CHD6	99	91.842	Chlorocebus_sabaeus
ENSUMAG00000002017	CHD6	95	89.768	ENSCHOG00000012647	CHD6	95	90.252	Choloepus_hoffmanni
ENSUMAG00000002017	CHD6	95	91.892	ENSCPBG00000019382	CHD6	99	73.597	Chrysemys_picta_bellii
ENSUMAG00000002017	CHD6	100	97.985	ENSCANG00000043435	CHD6	100	97.985	Colobus_angolensis_palliatus
ENSUMAG00000002017	CHD6	95	94.015	ENSCGRG00001002694	Chd6	99	89.361	Cricetulus_griseus_chok1gshd
ENSUMAG00000002017	CHD6	100	95.604	ENSCGRG00000006749	-	100	95.604	Cricetulus_griseus_crigri
ENSUMAG00000002017	CHD6	91	88.866	ENSDARG00000017244	chd6	80	72.609	Danio_rerio
ENSUMAG00000002017	CHD6	95	95.560	ENSDNOG00000004176	CHD6	99	90.513	Dasypus_novemcinctus
ENSUMAG00000002017	CHD6	100	97.431	ENSEASG00005023433	CHD6	100	97.431	Equus_asinus_asinus
ENSUMAG00000002017	CHD6	99	93.909	ENSECAG00000011761	CHD6	99	93.905	Equus_caballus
ENSUMAG00000002017	CHD6	94	84.990	ENSELUG00000012309	chd6	92	80.730	Esox_lucius
ENSUMAG00000002017	CHD6	99	95.419	ENSFCAG00000003572	CHD6	99	95.416	Felis_catus
ENSUMAG00000002017	CHD6	95	91.506	ENSFALG00000012563	CHD6	99	70.622	Ficedula_albicollis
ENSUMAG00000002017	CHD6	95	95.367	ENSFDAG00000013791	CHD6	99	90.654	Fukomys_damarensis
ENSUMAG00000002017	CHD6	89	82.510	ENSGMOG00000011715	chd6	83	70.239	Gadus_morhua
ENSUMAG00000002017	CHD6	91	81.818	ENSGACG00000000037	chd6	93	64.197	Gasterosteus_aculeatus
ENSUMAG00000002017	CHD6	62	93.713	ENSGAGG00000007475	-	79	93.878	Gopherus_agassizii
ENSUMAG00000002017	CHD6	100	97.985	ENSGGOG00000013123	CHD6	100	97.985	Gorilla_gorilla
ENSUMAG00000002017	CHD6	95	83.815	ENSHBUG00000014701	chd6	65	73.419	Haplochromis_burtoni
ENSUMAG00000002017	CHD6	95	95.560	ENSHGLG00000004548	CHD6	99	90.768	Heterocephalus_glaber_female
ENSUMAG00000002017	CHD6	95	95.560	ENSHGLG00100006401	CHD6	99	90.768	Heterocephalus_glaber_male
ENSUMAG00000002017	CHD6	94	85.380	ENSIPUG00000003692	chd6	74	76.744	Ictalurus_punctatus
ENSUMAG00000002017	CHD6	95	96.139	ENSSTOG00000013382	CHD6	99	91.393	Ictidomys_tridecemlineatus
ENSUMAG00000002017	CHD6	95	87.066	ENSLACG00000010881	CHD6	86	76.474	Latimeria_chalumnae
ENSUMAG00000002017	CHD6	94	86.745	ENSLOCG00000007386	chd6	89	75.684	Lepisosteus_oculatus
ENSUMAG00000002017	CHD6	95	95.753	ENSLAFG00000012144	CHD6	99	91.654	Loxodonta_africana
ENSUMAG00000002017	CHD6	100	97.985	ENSMFAG00000032830	CHD6	100	97.985	Macaca_fascicularis
ENSUMAG00000002017	CHD6	100	97.985	ENSMMUG00000020458	CHD6	100	97.985	Macaca_mulatta
ENSUMAG00000002017	CHD6	100	97.985	ENSMNEG00000040847	CHD6	100	97.985	Macaca_nemestrina
ENSUMAG00000002017	CHD6	100	97.985	ENSMLEG00000031965	CHD6	100	97.985	Mandrillus_leucophaeus
ENSUMAG00000002017	CHD6	95	84.200	ENSMAMG00000013111	chd6	65	73.752	Mastacembelus_armatus
ENSUMAG00000002017	CHD6	95	91.522	ENSMGAG00000001121	CHD6	100	72.137	Meleagris_gallopavo
ENSUMAG00000002017	CHD6	100	97.436	ENSMICG00000016641	CHD6	100	97.436	Microcebus_murinus
ENSUMAG00000002017	CHD6	96	93.846	ENSMOCG00000014004	-	97	94.773	Microtus_ochrogaster
ENSUMAG00000002017	CHD6	95	94.402	ENSMODG00000000720	-	99	80.958	Monodelphis_domestica
ENSUMAG00000002017	CHD6	95	93.629	MGP_CAROLIEiJ_G0024604	Chd6	99	94.373	Mus_caroli
ENSUMAG00000002017	CHD6	95	93.629	ENSMUSG00000057133	Chd6	99	94.288	Mus_musculus
ENSUMAG00000002017	CHD6	95	93.822	MGP_PahariEiJ_G0026048	Chd6	99	94.714	Mus_pahari
ENSUMAG00000002017	CHD6	95	93.629	MGP_SPRETEiJ_G0025526	Chd6	99	94.373	Mus_spretus
ENSUMAG00000002017	CHD6	99	95.873	ENSMPUG00000017695	CHD6	99	95.870	Mustela_putorius_furo
ENSUMAG00000002017	CHD6	99	92.543	ENSMLUG00000016247	CHD6	99	92.538	Myotis_lucifugus
ENSUMAG00000002017	CHD6	94	84.078	ENSNBRG00000013839	chd6	79	73.825	Neolamprologus_brichardi
ENSUMAG00000002017	CHD6	99	90.576	ENSNLEG00000006496	CHD6	99	90.587	Nomascus_leucogenys
ENSUMAG00000002017	CHD6	99	87.043	ENSOPRG00000013376	-	99	87.034	Ochotona_princeps
ENSUMAG00000002017	CHD6	95	84.008	ENSONIG00000000393	chd6	86	74.936	Oreochromis_niloticus
ENSUMAG00000002017	CHD6	95	92.085	ENSOANG00000014347	CHD6	99	70.338	Ornithorhynchus_anatinus
ENSUMAG00000002017	CHD6	95	96.332	ENSOCUG00000012394	CHD6	99	89.952	Oryctolagus_cuniculus
ENSUMAG00000002017	CHD6	96	83.748	ENSORLG00020021891	chd6	99	83.748	Oryzias_latipes_hni
ENSUMAG00000002017	CHD6	95	95.946	ENSOGAG00000002427	CHD6	99	90.174	Otolemur_garnettii
ENSUMAG00000002017	CHD6	95	96.332	ENSOARG00000002597	CHD6	99	87.523	Ovis_aries
ENSUMAG00000002017	CHD6	99	95.567	ENSPPRG00000014756	CHD6	99	95.564	Panthera_pardus
ENSUMAG00000002017	CHD6	99	95.456	ENSPTIG00000011094	CHD6	99	95.453	Panthera_tigris_altaica
ENSUMAG00000002017	CHD6	100	97.985	ENSPTRG00000013504	CHD6	99	97.985	Pan_troglodytes
ENSUMAG00000002017	CHD6	100	97.802	ENSPANG00000025554	CHD6	100	97.802	Papio_anubis
ENSUMAG00000002017	CHD6	94	86.745	ENSPKIG00000005578	chd6	79	73.199	Paramormyrops_kingsleyae
ENSUMAG00000002017	CHD6	95	84.749	ENSPMGG00000014877	chd6	84	76.025	Periophthalmus_magnuspinnatus
ENSUMAG00000002017	CHD6	100	95.604	ENSPEMG00000014672	-	100	95.604	Peromyscus_maniculatus_bairdii
ENSUMAG00000002017	CHD6	95	94.402	ENSPCIG00000028037	CHD6	99	80.605	Phascolarctos_cinereus
ENSUMAG00000002017	CHD6	95	83.815	ENSPLAG00000003128	chd6	65	71.875	Poecilia_latipinna
ENSUMAG00000002017	CHD6	96	83.333	ENSPREG00000022653	chd6	99	86.630	Poecilia_reticulata
ENSUMAG00000002017	CHD6	95	96.332	ENSPPYG00000011016	CHD6	99	92.177	Pongo_abelii
ENSUMAG00000002017	CHD6	100	97.985	ENSPCOG00000001089	CHD6	100	97.985	Propithecus_coquereli
ENSUMAG00000002017	CHD6	95	83.815	ENSPNYG00000022516	chd6	78	74.935	Pundamilia_nyererei
ENSUMAG00000002017	CHD6	94	86.745	ENSPNAG00000012825	chd6	76	74.725	Pygocentrus_nattereri
ENSUMAG00000002017	CHD6	95	93.436	ENSRNOG00000016744	Chd6	99	87.329	Rattus_norvegicus
ENSUMAG00000002017	CHD6	100	97.985	ENSSBOG00000022089	CHD6	99	97.985	Saimiri_boliviensis_boliviensis
ENSUMAG00000002017	CHD6	95	94.208	ENSSHAG00000017072	CHD6	99	80.398	Sarcophilus_harrisii
ENSUMAG00000002017	CHD6	94	86.550	ENSSFOG00015012920	chd6	81	73.567	Scleropages_formosus
ENSUMAG00000002017	CHD6	85	99.563	ENSSARG00000002615	-	60	100.000	Sorex_araneus
ENSUMAG00000002017	CHD6	95	96.139	ENSSSCG00000007360	CHD6	99	92.708	Sus_scrofa
ENSUMAG00000002017	CHD6	95	91.892	ENSTGUG00000003179	CHD6	99	73.538	Taeniopygia_guttata
ENSUMAG00000002017	CHD6	95	82.852	ENSTNIG00000017487	chd6	57	77.302	Tetraodon_nigroviridis
ENSUMAG00000002017	CHD6	95	94.015	ENSTTRG00000013438	CHD6	99	89.266	Tursiops_truncatus
ENSUMAG00000002017	CHD6	100	100.000	ENSUAMG00000024036	CHD6	100	100.000	Ursus_americanus
ENSUMAG00000002017	CHD6	93	90.551	ENSVPAG00000007941	CHD6	93	91.943	Vicugna_pacos
ENSUMAG00000002017	CHD6	99	96.749	ENSVVUG00000029164	CHD6	99	96.749	Vulpes_vulpes
ENSUMAG00000002017	CHD6	91	69.903	ENSXETG00000021445	chd6	92	69.938	Xenopus_tropicalis