EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000002411 (Gene tree)
Gene ID: 103657437
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 34946 bases
Position: chrKK498509.1:16345264-16380209
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000002761	TruB_N	PF01509.18	3.6e-50	1	1
ENSUMAP00000002755	TruB_N	PF01509.18	1.1e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000003405	TRUB1-201	768	-	ENSUMAP00000002755	255 (aa)	-	-
ENSUMAT00000003411	TRUB1-202	1014	-	ENSUMAP00000002761	337 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000002411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000002411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000002411	TRUB1	74	31.271	ENSUMAG00000022051	TRUB2	85	31.271

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000002411	TRUB1	99	89.685	ENSG00000165832	TRUB1	84	96.610	Homo_sapiens
ENSUMAG00000002411	TRUB1	73	68.980	ENSAPOG00000020565	trub1	89	68.699	Acanthochromis_polyacanthus
ENSUMAG00000002411	TRUB1	100	93.466	ENSAMEG00000014931	TRUB1	100	93.466	Ailuropoda_melanoleuca
ENSUMAG00000002411	TRUB1	84	57.394	ENSACIG00000003060	trub1	94	57.394	Amphilophus_citrinellus
ENSUMAG00000002411	TRUB1	73	68.980	ENSAOCG00000017188	trub1	89	68.699	Amphiprion_ocellaris
ENSUMAG00000002411	TRUB1	73	68.293	ENSAPEG00000015209	trub1	89	68.293	Amphiprion_percula
ENSUMAG00000002411	TRUB1	72	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSUMAG00000002411	TRUB1	82	76.000	ENSAPLG00000006808	TRUB1	99	76.000	Anas_platyrhynchos
ENSUMAG00000002411	TRUB1	80	72.119	ENSACAG00000009282	TRUB1	97	72.119	Anolis_carolinensis
ENSUMAG00000002411	TRUB1	95	91.018	ENSANAG00000022870	TRUB1	84	97.619	Aotus_nancymaae
ENSUMAG00000002411	TRUB1	75	67.460	ENSACLG00000000823	trub1	91	67.460	Astatotilapia_calliptera
ENSUMAG00000002411	TRUB1	80	65.926	ENSAMXG00000015845	trub1	87	67.050	Astyanax_mexicanus
ENSUMAG00000002411	TRUB1	98	91.228	ENSBTAG00000012955	TRUB1	84	97.627	Bos_taurus
ENSUMAG00000002411	TRUB1	99	90.000	ENSCJAG00000047815	TRUB1	84	97.627	Callithrix_jacchus
ENSUMAG00000002411	TRUB1	99	94.269	ENSCAFG00000011688	TRUB1	99	94.269	Canis_familiaris
ENSUMAG00000002411	TRUB1	99	94.269	ENSCAFG00020013237	TRUB1	99	94.269	Canis_lupus_dingo
ENSUMAG00000002411	TRUB1	88	97.973	ENSCHIG00000020884	TRUB1	88	97.966	Capra_hircus
ENSUMAG00000002411	TRUB1	99	88.286	ENSTSYG00000000446	TRUB1	84	96.271	Carlito_syrichta
ENSUMAG00000002411	TRUB1	75	85.771	ENSCAPG00000017088	TRUB1	99	85.771	Cavia_aperea
ENSUMAG00000002411	TRUB1	91	82.449	ENSCPOG00000040236	-	78	94.764	Cavia_porcellus
ENSUMAG00000002411	TRUB1	99	78.740	ENSCPOG00000030129	-	75	94.301	Cavia_porcellus
ENSUMAG00000002411	TRUB1	88	96.959	ENSCCAG00000028842	TRUB1	84	96.949	Cebus_capucinus
ENSUMAG00000002411	TRUB1	99	89.971	ENSCATG00000033431	TRUB1	84	97.288	Cercocebus_atys
ENSUMAG00000002411	TRUB1	91	84.898	ENSCLAG00000008664	TRUB1	78	96.335	Chinchilla_lanigera
ENSUMAG00000002411	TRUB1	99	90.258	ENSCSAG00000004891	TRUB1	84	97.627	Chlorocebus_sabaeus
ENSUMAG00000002411	TRUB1	99	75.723	ENSCHOG00000011931	TRUB1	83	80.822	Choloepus_hoffmanni
ENSUMAG00000002411	TRUB1	81	79.779	ENSCPBG00000003051	TRUB1	94	79.779	Chrysemys_picta_bellii
ENSUMAG00000002411	TRUB1	99	90.258	ENSCANG00000029445	TRUB1	84	97.627	Colobus_angolensis_palliatus
ENSUMAG00000002411	TRUB1	91	78.758	ENSCGRG00001010322	-	79	80.612	Cricetulus_griseus_chok1gshd
ENSUMAG00000002411	TRUB1	75	88.189	ENSCGRG00001016772	-	89	80.000	Cricetulus_griseus_chok1gshd
ENSUMAG00000002411	TRUB1	83	89.286	ENSCGRG00000010806	Trub1	90	88.814	Cricetulus_griseus_crigri
ENSUMAG00000002411	TRUB1	72	66.667	ENSCSEG00000011261	trub1	94	58.763	Cynoglossus_semilaevis
ENSUMAG00000002411	TRUB1	77	64.796	ENSCVAG00000008791	trub1	79	66.279	Cyprinodon_variegatus
ENSUMAG00000002411	TRUB1	86	62.887	ENSDARG00000053805	trub1	93	64.286	Danio_rerio
ENSUMAG00000002411	TRUB1	97	85.588	ENSDNOG00000001069	TRUB1	84	91.497	Dasypus_novemcinctus
ENSUMAG00000002411	TRUB1	99	87.826	ENSDORG00000010431	Trub1	85	95.254	Dipodomys_ordii
ENSUMAG00000002411	TRUB1	80	75.980	ENSETEG00000009183	TRUB1	64	88.811	Echinops_telfairi
ENSUMAG00000002411	TRUB1	88	96.622	ENSEASG00005014739	TRUB1	84	96.610	Equus_asinus_asinus
ENSUMAG00000002411	TRUB1	88	96.622	ENSECAG00000007177	TRUB1	84	96.610	Equus_caballus
ENSUMAG00000002411	TRUB1	99	75.698	ENSEEUG00000013993	TRUB1	82	83.276	Erinaceus_europaeus
ENSUMAG00000002411	TRUB1	72	71.585	ENSELUG00000000502	trub1	86	70.204	Esox_lucius
ENSUMAG00000002411	TRUB1	96	91.988	ENSFCAG00000031927	TRUB1	97	89.021	Felis_catus
ENSUMAG00000002411	TRUB1	71	76.667	ENSFALG00000002232	TRUB1	92	76.667	Ficedula_albicollis
ENSUMAG00000002411	TRUB1	91	83.673	ENSFDAG00000008140	TRUB1	78	96.859	Fukomys_damarensis
ENSUMAG00000002411	TRUB1	79	65.174	ENSFHEG00000004016	trub1	84	66.531	Fundulus_heteroclitus
ENSUMAG00000002411	TRUB1	81	74.632	ENSGALG00000009091	TRUB1	96	74.632	Gallus_gallus
ENSUMAG00000002411	TRUB1	76	64.141	ENSGAFG00000009193	trub1	86	64.898	Gambusia_affinis
ENSUMAG00000002411	TRUB1	58	68.718	ENSGACG00000015387	trub1	96	68.718	Gasterosteus_aculeatus
ENSUMAG00000002411	TRUB1	88	75.593	ENSGAGG00000009758	TRUB1	80	78.853	Gopherus_agassizii
ENSUMAG00000002411	TRUB1	99	90.258	ENSGGOG00000004583	TRUB1	84	97.288	Gorilla_gorilla
ENSUMAG00000002411	TRUB1	80	64.815	ENSHBUG00000016787	trub1	91	67.460	Haplochromis_burtoni
ENSUMAG00000002411	TRUB1	99	84.241	ENSHGLG00000015314	TRUB1	85	91.864	Heterocephalus_glaber_female
ENSUMAG00000002411	TRUB1	91	84.874	ENSHGLG00100009183	TRUB1	81	95.812	Heterocephalus_glaber_male
ENSUMAG00000002411	TRUB1	73	68.571	ENSHCOG00000017877	trub1	89	68.571	Hippocampus_comes
ENSUMAG00000002411	TRUB1	82	65.942	ENSIPUG00000017559	trub1	95	66.914	Ictalurus_punctatus
ENSUMAG00000002411	TRUB1	88	95.608	ENSSTOG00000003641	TRUB1	88	95.593	Ictidomys_tridecemlineatus
ENSUMAG00000002411	TRUB1	99	84.661	ENSJJAG00000011800	Trub1	87	92.203	Jaculus_jaculus
ENSUMAG00000002411	TRUB1	79	65.174	ENSKMAG00000006232	trub1	92	66.148	Kryptolebias_marmoratus
ENSUMAG00000002411	TRUB1	79	64.662	ENSLBEG00000026722	trub1	92	64.662	Labrus_bergylta
ENSUMAG00000002411	TRUB1	83	72.857	ENSLACG00000014885	TRUB1	91	73.993	Latimeria_chalumnae
ENSUMAG00000002411	TRUB1	81	70.438	ENSLOCG00000012979	trub1	91	71.642	Lepisosteus_oculatus
ENSUMAG00000002411	TRUB1	99	81.375	ENSLAFG00000015452	TRUB1	86	86.000	Loxodonta_africana
ENSUMAG00000002411	TRUB1	99	89.971	ENSMFAG00000031767	TRUB1	84	97.288	Macaca_fascicularis
ENSUMAG00000002411	TRUB1	99	90.258	ENSMMUG00000001902	TRUB1	84	97.627	Macaca_mulatta
ENSUMAG00000002411	TRUB1	99	85.960	ENSMNEG00000044646	TRUB1	84	92.542	Macaca_nemestrina
ENSUMAG00000002411	TRUB1	99	89.971	ENSMLEG00000042655	TRUB1	84	97.627	Mandrillus_leucophaeus
ENSUMAG00000002411	TRUB1	75	67.460	ENSMZEG00005024095	trub1	91	67.460	Maylandia_zebra
ENSUMAG00000002411	TRUB1	81	74.632	ENSMGAG00000011135	TRUB1	93	74.632	Meleagris_gallopavo
ENSUMAG00000002411	TRUB1	83	85.714	ENSMAUG00000011101	Trub1	87	85.763	Mesocricetus_auratus
ENSUMAG00000002411	TRUB1	99	91.404	ENSMICG00000016324	TRUB1	96	90.179	Microcebus_murinus
ENSUMAG00000002411	TRUB1	99	81.250	ENSMOCG00000017759	Trub1	89	88.136	Microtus_ochrogaster
ENSUMAG00000002411	TRUB1	85	83.972	ENSMODG00000009676	TRUB1	81	82.373	Monodelphis_domestica
ENSUMAG00000002411	TRUB1	99	82.111	MGP_CAROLIEiJ_G0023100	Trub1	87	88.737	Mus_caroli
ENSUMAG00000002411	TRUB1	99	80.938	ENSMUSG00000025086	Trub1	87	87.713	Mus_musculus
ENSUMAG00000002411	TRUB1	99	83.284	MGP_PahariEiJ_G0014588	Trub1	87	88.475	Mus_pahari
ENSUMAG00000002411	TRUB1	99	81.232	MGP_SPRETEiJ_G0024021	Trub1	87	88.055	Mus_spretus
ENSUMAG00000002411	TRUB1	100	94.286	ENSMPUG00000003556	TRUB1	100	94.286	Mustela_putorius_furo
ENSUMAG00000002411	TRUB1	95	91.331	ENSMLUG00000017686	TRUB1	96	91.385	Myotis_lucifugus
ENSUMAG00000002411	TRUB1	99	82.521	ENSNGAG00000018682	Trub1	85	91.864	Nannospalax_galili
ENSUMAG00000002411	TRUB1	73	68.699	ENSNBRG00000023393	trub1	88	68.699	Neolamprologus_brichardi
ENSUMAG00000002411	TRUB1	96	90.179	ENSNLEG00000016345	TRUB1	84	96.949	Nomascus_leucogenys
ENSUMAG00000002411	TRUB1	77	84.694	ENSMEUG00000006603	TRUB1	77	88.995	Notamacropus_eugenii
ENSUMAG00000002411	TRUB1	87	87.755	ENSOPRG00000009371	TRUB1	85	87.755	Ochotona_princeps
ENSUMAG00000002411	TRUB1	99	83.954	ENSODEG00000010854	TRUB1	85	91.186	Octodon_degus
ENSUMAG00000002411	TRUB1	73	68.293	ENSONIG00000007249	trub1	89	68.293	Oreochromis_niloticus
ENSUMAG00000002411	TRUB1	81	81.022	ENSOANG00000001556	TRUB1	90	81.022	Ornithorhynchus_anatinus
ENSUMAG00000002411	TRUB1	88	89.527	ENSOCUG00000009456	TRUB1	85	90.102	Oryctolagus_cuniculus
ENSUMAG00000002411	TRUB1	72	69.710	ENSORLG00000029719	trub1	86	69.710	Oryzias_latipes
ENSUMAG00000002411	TRUB1	72	69.295	ENSORLG00020016767	trub1	85	69.295	Oryzias_latipes_hni
ENSUMAG00000002411	TRUB1	72	69.295	ENSORLG00015014728	trub1	86	69.295	Oryzias_latipes_hsok
ENSUMAG00000002411	TRUB1	80	66.502	ENSOMEG00000014556	trub1	85	69.008	Oryzias_melastigma
ENSUMAG00000002411	TRUB1	99	91.117	ENSOGAG00000015895	TRUB1	84	98.644	Otolemur_garnettii
ENSUMAG00000002411	TRUB1	88	95.364	ENSOARG00000015591	TRUB1	86	95.364	Ovis_aries
ENSUMAG00000002411	TRUB1	99	90.258	ENSPPAG00000043645	TRUB1	84	97.288	Pan_paniscus
ENSUMAG00000002411	TRUB1	96	91.691	ENSPPRG00000007096	TRUB1	97	92.285	Panthera_pardus
ENSUMAG00000002411	TRUB1	96	91.988	ENSPTIG00000006378	TRUB1	97	92.582	Panthera_tigris_altaica
ENSUMAG00000002411	TRUB1	99	90.258	ENSPTRG00000002964	TRUB1	84	97.288	Pan_troglodytes
ENSUMAG00000002411	TRUB1	99	90.258	ENSPANG00000020712	TRUB1	84	97.627	Papio_anubis
ENSUMAG00000002411	TRUB1	51	68.786	ENSPKIG00000003852	trub1	72	70.659	Paramormyrops_kingsleyae
ENSUMAG00000002411	TRUB1	81	77.574	ENSPSIG00000012877	TRUB1	93	77.574	Pelodiscus_sinensis
ENSUMAG00000002411	TRUB1	76	64.314	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSUMAG00000002411	TRUB1	99	79.941	ENSPEMG00000011156	Trub1	87	86.441	Peromyscus_maniculatus_bairdii
ENSUMAG00000002411	TRUB1	85	83.972	ENSPCIG00000009729	TRUB1	80	82.935	Phascolarctos_cinereus
ENSUMAG00000002411	TRUB1	72	68.306	ENSPFOG00000009950	trub1	90	66.531	Poecilia_formosa
ENSUMAG00000002411	TRUB1	72	68.306	ENSPLAG00000013855	trub1	86	66.531	Poecilia_latipinna
ENSUMAG00000002411	TRUB1	72	68.306	ENSPMEG00000009064	trub1	88	66.531	Poecilia_mexicana
ENSUMAG00000002411	TRUB1	76	65.637	ENSPREG00000003343	trub1	88	67.347	Poecilia_reticulata
ENSUMAG00000002411	TRUB1	96	90.179	ENSPPYG00000002676	TRUB1	84	96.949	Pongo_abelii
ENSUMAG00000002411	TRUB1	99	74.716	ENSPCAG00000008427	TRUB1	83	80.205	Procavia_capensis
ENSUMAG00000002411	TRUB1	99	85.673	ENSPCOG00000024360	TRUB1	84	91.864	Propithecus_coquereli
ENSUMAG00000002411	TRUB1	96	86.486	ENSPVAG00000007575	TRUB1	95	89.243	Pteropus_vampyrus
ENSUMAG00000002411	TRUB1	75	67.460	ENSPNYG00000018614	trub1	91	67.460	Pundamilia_nyererei
ENSUMAG00000002411	TRUB1	77	59.615	ENSPNAG00000006881	trub1	84	59.615	Pygocentrus_nattereri
ENSUMAG00000002411	TRUB1	99	81.977	ENSRNOG00000017321	Trub1	87	88.136	Rattus_norvegicus
ENSUMAG00000002411	TRUB1	99	80.802	ENSRBIG00000033423	TRUB1	83	86.102	Rhinopithecus_bieti
ENSUMAG00000002411	TRUB1	99	90.544	ENSRROG00000033902	TRUB1	84	97.627	Rhinopithecus_roxellana
ENSUMAG00000002411	TRUB1	96	90.476	ENSSBOG00000024237	TRUB1	84	97.288	Saimiri_boliviensis_boliviensis
ENSUMAG00000002411	TRUB1	76	82.101	ENSSHAG00000009346	TRUB1	86	82.101	Sarcophilus_harrisii
ENSUMAG00000002411	TRUB1	77	68.217	ENSSFOG00015022124	trub1	83	70.370	Scleropages_formosus
ENSUMAG00000002411	TRUB1	73	69.106	ENSSMAG00000001020	trub1	88	69.106	Scophthalmus_maximus
ENSUMAG00000002411	TRUB1	71	69.583	ENSSDUG00000016414	trub1	88	69.512	Seriola_dumerili
ENSUMAG00000002411	TRUB1	71	70.000	ENSSLDG00000015486	trub1	88	69.919	Seriola_lalandi_dorsalis
ENSUMAG00000002411	TRUB1	83	77.857	ENSSPUG00000001642	TRUB1	96	78.136	Sphenodon_punctatus
ENSUMAG00000002411	TRUB1	78	66.920	ENSSPAG00000001217	trub1	94	66.920	Stegastes_partitus
ENSUMAG00000002411	TRUB1	99	86.819	ENSSSCG00000010653	TRUB1	84	92.517	Sus_scrofa
ENSUMAG00000002411	TRUB1	80	76.296	ENSTGUG00000010971	TRUB1	97	76.103	Taeniopygia_guttata
ENSUMAG00000002411	TRUB1	75	77.953	ENSTBEG00000002880	TRUB1	100	77.953	Tupaia_belangeri
ENSUMAG00000002411	TRUB1	82	91.346	ENSTTRG00000005767	TRUB1	80	98.095	Tursiops_truncatus
ENSUMAG00000002411	TRUB1	100	96.000	ENSUAMG00000024876	TRUB1	100	96.000	Ursus_americanus
ENSUMAG00000002411	TRUB1	99	91.117	ENSVPAG00000005507	TRUB1	84	96.610	Vicugna_pacos
ENSUMAG00000002411	TRUB1	99	95.376	ENSVVUG00000010085	TRUB1	83	95.376	Vulpes_vulpes
ENSUMAG00000002411	TRUB1	81	66.912	ENSXETG00000023828	trub1	98	66.912	Xenopus_tropicalis
ENSUMAG00000002411	TRUB1	72	67.760	ENSXCOG00000017847	trub1	86	65.574	Xiphophorus_couchianus
ENSUMAG00000002411	TRUB1	72	67.760	ENSXMAG00000014701	trub1	88	65.714	Xiphophorus_maculatus