EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSUMAG00000002625 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Ursus_maritimus
Status
putative
Strand
Minus strand
Length
5597 bases
Position
chrKK498552.1:20913262-20918858
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUMAP00000003008LSMPF01423.229e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUMAT00000003728LSM5-201466-ENSUMAP00000003008139 (aa)--
Gene Model
Click here to download ENSUMAG00000002625's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000002625's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSUMAG00000002625LSM55031.507ENSUMAG00000005861SNRPE5331.507
ENSUMAG00000002625LSM55434.667ENSUMAG00000015905LSM37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUMAG00000002625LSM56598.901ENSG00000106355LSM510098.901Homo_sapiens
ENSUMAG00000002625LSM56594.505ENSAPOG00000020779LSM510095.294Acanthochromis_polyacanthus
ENSUMAG00000002625LSM55995.122ENSAPOG00000011743LSM59896.721Acanthochromis_polyacanthus
ENSUMAG00000002625LSM56598.901ENSAMEG00000006700LSM510098.901Ailuropoda_melanoleuca
ENSUMAG00000002625LSM56258.140ENSACIG00000019185lsm59658.140Amphilophus_citrinellus
ENSUMAG00000002625LSM56594.505ENSAOCG00000001636lsm510094.505Amphiprion_ocellaris
ENSUMAG00000002625LSM56594.505ENSAPEG00000008151lsm510094.505Amphiprion_percula
ENSUMAG00000002625LSM55993.902ENSATEG00000020470lsm59858.889Anabas_testudineus
ENSUMAG00000002625LSM553100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSUMAG00000002625LSM56594.444ENSANAG00000024192-9494.444Aotus_nancymaae
ENSUMAG00000002625LSM56578.889ENSANAG00000037758-9978.889Aotus_nancymaae
ENSUMAG00000002625LSM56597.802ENSANAG00000034409-10097.802Aotus_nancymaae
ENSUMAG00000002625LSM56394.253ENSACLG00000012891lsm59994.253Astatotilapia_calliptera
ENSUMAG00000002625LSM56580.851ENSAMXG00000035543lsm59981.720Astyanax_mexicanus
ENSUMAG00000002625LSM56598.901ENSBTAG00000002332LSM510098.901Bos_taurus
ENSUMAG00000002625LSM56574.444WBGene00003079lsm-59974.444Caenorhabditis_elegans
ENSUMAG00000002625LSM56585.556ENSCJAG00000005678-10085.556Callithrix_jacchus
ENSUMAG00000002625LSM565100.000ENSCJAG00000047379LSM58192.308Callithrix_jacchus
ENSUMAG00000002625LSM56597.802ENSCAFG00000019261-10097.802Canis_familiaris
ENSUMAG00000002625LSM56598.901ENSCAFG00020004946LSM510098.901Canis_lupus_dingo
ENSUMAG00000002625LSM56598.901ENSCHIG00000024539LSM510098.901Capra_hircus
ENSUMAG00000002625LSM55375.676ENSCHIG00000021428-9572.727Capra_hircus
ENSUMAG00000002625LSM56596.703ENSCHIG00000004079-10096.703Capra_hircus
ENSUMAG00000002625LSM56598.901ENSTSYG00000006449-10098.901Carlito_syrichta
ENSUMAG00000002625LSM56585.714ENSTSYG00000028728-10085.714Carlito_syrichta
ENSUMAG00000002625LSM56778.495ENSTSYG00000026530-9378.495Carlito_syrichta
ENSUMAG00000002625LSM56574.444ENSTSYG00000036637-9974.444Carlito_syrichta
ENSUMAG00000002625LSM55391.892ENSCAPG00000006980LSM59991.892Cavia_aperea
ENSUMAG00000002625LSM56598.901ENSCPOG00000036386LSM510098.901Cavia_porcellus
ENSUMAG00000002625LSM56598.901ENSCCAG00000037808-10098.901Cebus_capucinus
ENSUMAG00000002625LSM56598.889ENSCCAG00000000821-9998.889Cebus_capucinus
ENSUMAG00000002625LSM56567.778ENSCCAG00000037334-9967.778Cebus_capucinus
ENSUMAG00000002625LSM56581.111ENSCCAG00000032792-9981.111Cebus_capucinus
ENSUMAG00000002625LSM56596.703ENSCCAG00000032123-10096.703Cebus_capucinus
ENSUMAG00000002625LSM56587.778ENSCATG00000014790-9598.182Cercocebus_atys
ENSUMAG00000002625LSM56598.901ENSCATG00000040218LSM510098.901Cercocebus_atys
ENSUMAG00000002625LSM56780.645ENSCLAG00000005062-9280.645Chinchilla_lanigera
ENSUMAG00000002625LSM56598.901ENSCLAG00000000202LSM510098.901Chinchilla_lanigera
ENSUMAG00000002625LSM554100.000ENSCHOG00000005335LSM599100.000Choloepus_hoffmanni
ENSUMAG00000002625LSM56598.901ENSCPBG00000013685LSM510098.901Chrysemys_picta_bellii
ENSUMAG00000002625LSM56389.773ENSCING00000020625-9889.773Ciona_intestinalis
ENSUMAG00000002625LSM56091.566ENSCSAVG00000001439-9491.566Ciona_savignyi
ENSUMAG00000002625LSM56598.901ENSCANG00000039909LSM510098.901Colobus_angolensis_palliatus
ENSUMAG00000002625LSM56598.901ENSCGRG00001015461Lsm510098.901Cricetulus_griseus_chok1gshd
ENSUMAG00000002625LSM553100.000ENSCGRG00000007677Lsm599100.000Cricetulus_griseus_crigri
ENSUMAG00000002625LSM56558.889ENSCSEG00000015286lsm59858.889Cynoglossus_semilaevis
ENSUMAG00000002625LSM56593.407ENSCVAG00000004262lsm510093.407Cyprinodon_variegatus
ENSUMAG00000002625LSM56593.407ENSDARG00000071573lsm59896.721Danio_rerio
ENSUMAG00000002625LSM56586.813ENSDNOG00000049495-10086.813Dasypus_novemcinctus
ENSUMAG00000002625LSM56598.901ENSDNOG00000034958LSM510098.901Dasypus_novemcinctus
ENSUMAG00000002625LSM56598.901ENSDORG00000009422Lsm510098.901Dipodomys_ordii
ENSUMAG00000002625LSM56281.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSUMAG00000002625LSM56467.416ENSETEG00000000777-9967.416Echinops_telfairi
ENSUMAG00000002625LSM55380.822ENSETEG00000016074-9780.822Echinops_telfairi
ENSUMAG00000002625LSM56578.022ENSETEG00000010651-10078.022Echinops_telfairi
ENSUMAG00000002625LSM56475.281ENSETEG00000001469-9775.281Echinops_telfairi
ENSUMAG00000002625LSM56598.901ENSETEG00000018068LSM510098.901Echinops_telfairi
ENSUMAG00000002625LSM56590.110ENSEBUG00000008540lsm510090.110Eptatretus_burgeri
ENSUMAG00000002625LSM56598.901ENSEASG00005003500LSM510098.901Equus_asinus_asinus
ENSUMAG00000002625LSM56584.615ENSECAG00000018445LSM510084.615Equus_caballus
ENSUMAG00000002625LSM56593.407ENSELUG00000007792lsm510093.407Esox_lucius
ENSUMAG00000002625LSM56598.901ENSFCAG00000000230LSM510098.901Felis_catus
ENSUMAG00000002625LSM554100.000ENSFALG00000001892LSM590100.000Ficedula_albicollis
ENSUMAG00000002625LSM56565.556ENSFDAG00000008685-9965.556Fukomys_damarensis
ENSUMAG00000002625LSM56598.901ENSFDAG00000008767LSM510098.901Fukomys_damarensis
ENSUMAG00000002625LSM55584.211ENSFHEG00000004011lsm58284.211Fundulus_heteroclitus
ENSUMAG00000002625LSM56594.444ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSUMAG00000002625LSM56597.802ENSGALG00000041625LSM510097.802Gallus_gallus
ENSUMAG00000002625LSM56594.505ENSGACG00000005528lsm510094.505Gasterosteus_aculeatus
ENSUMAG00000002625LSM56598.901ENSGAGG00000015593LSM510098.901Gopherus_agassizii
ENSUMAG00000002625LSM56598.901ENSGGOG00000043469LSM510098.901Gorilla_gorilla
ENSUMAG00000002625LSM56394.253ENSHBUG00000013773lsm59994.253Haplochromis_burtoni
ENSUMAG00000002625LSM56598.901ENSHGLG00000011765LSM510098.901Heterocephalus_glaber_female
ENSUMAG00000002625LSM56595.604ENSHGLG00100015610LSM510095.604Heterocephalus_glaber_male
ENSUMAG00000002625LSM56558.889ENSHCOG00000008288lsm59858.889Hippocampus_comes
ENSUMAG00000002625LSM56592.308ENSIPUG00000021095LSM510092.308Ictalurus_punctatus
ENSUMAG00000002625LSM56598.901ENSSTOG00000012662LSM510098.901Ictidomys_tridecemlineatus
ENSUMAG00000002625LSM56279.545ENSSTOG00000033886-9979.545Ictidomys_tridecemlineatus
ENSUMAG00000002625LSM55791.139ENSJJAG00000004475-10091.139Jaculus_jaculus
ENSUMAG00000002625LSM56869.149ENSJJAG00000016144-9669.149Jaculus_jaculus
ENSUMAG00000002625LSM56596.703ENSJJAG00000012145-10096.703Jaculus_jaculus
ENSUMAG00000002625LSM56593.407ENSKMAG00000021861lsm510093.407Kryptolebias_marmoratus
ENSUMAG00000002625LSM55993.902ENSLBEG00000009235LSM56593.902Labrus_bergylta
ENSUMAG00000002625LSM56594.505ENSLACG00000022448LSM510094.505Latimeria_chalumnae
ENSUMAG00000002625LSM56593.407ENSLOCG00000012903lsm510093.407Lepisosteus_oculatus
ENSUMAG00000002625LSM56598.901ENSLAFG00000029579LSM510098.901Loxodonta_africana
ENSUMAG00000002625LSM56570.330ENSLAFG00000027938-10070.330Loxodonta_africana
ENSUMAG00000002625LSM56596.667ENSMFAG00000030152-9996.667Macaca_fascicularis
ENSUMAG00000002625LSM56598.901ENSMFAG00000038508LSM510098.901Macaca_fascicularis
ENSUMAG00000002625LSM56588.889ENSMMUG00000039822-10088.889Macaca_mulatta
ENSUMAG00000002625LSM56596.667ENSMMUG00000030131-9996.667Macaca_mulatta
ENSUMAG00000002625LSM56598.901ENSMNEG00000015331LSM510098.901Macaca_nemestrina
ENSUMAG00000002625LSM56596.667ENSMNEG00000037935-9996.667Macaca_nemestrina
ENSUMAG00000002625LSM56388.636ENSMLEG00000034037-9988.636Mandrillus_leucophaeus
ENSUMAG00000002625LSM56598.901ENSMLEG00000024945LSM510098.901Mandrillus_leucophaeus
ENSUMAG00000002625LSM56590.110ENSMAMG00000012869lsm510090.110Mastacembelus_armatus
ENSUMAG00000002625LSM56394.253ENSMZEG00005019554lsm59994.253Maylandia_zebra
ENSUMAG00000002625LSM56597.802ENSMGAG00000012117LSM510097.802Meleagris_gallopavo
ENSUMAG00000002625LSM56598.901ENSMAUG00000012222Lsm510098.901Mesocricetus_auratus
ENSUMAG00000002625LSM56597.802ENSMAUG00000008132-10097.802Mesocricetus_auratus
ENSUMAG00000002625LSM56477.528ENSMICG00000033928-9577.528Microcebus_murinus
ENSUMAG00000002625LSM56598.901ENSMICG00000005353LSM510098.901Microcebus_murinus
ENSUMAG00000002625LSM56598.901ENSMOCG00000012018Lsm510098.901Microtus_ochrogaster
ENSUMAG00000002625LSM55497.333ENSMMOG00000004026lsm58697.333Mola_mola
ENSUMAG00000002625LSM56598.901MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSUMAG00000002625LSM56598.901ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSUMAG00000002625LSM56598.901MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSUMAG00000002625LSM56598.901MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSUMAG00000002625LSM56598.901ENSMLUG00000017028LSM510098.901Myotis_lucifugus
ENSUMAG00000002625LSM56586.957ENSNGAG00000017707-9986.957Nannospalax_galili
ENSUMAG00000002625LSM56598.901ENSNGAG00000024142Lsm510098.901Nannospalax_galili
ENSUMAG00000002625LSM56478.652ENSNGAG00000022569-9578.652Nannospalax_galili
ENSUMAG00000002625LSM56598.901ENSNLEG00000015268LSM510098.901Nomascus_leucogenys
ENSUMAG00000002625LSM553100.000ENSOPRG00000002443LSM599100.000Ochotona_princeps
ENSUMAG00000002625LSM56598.901ENSODEG00000019072-10098.901Octodon_degus
ENSUMAG00000002625LSM56598.901ENSODEG00000008258-10098.901Octodon_degus
ENSUMAG00000002625LSM55461.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSUMAG00000002625LSM56598.901ENSOCUG00000029043LSM510098.901Oryctolagus_cuniculus
ENSUMAG00000002625LSM56593.333ENSORLG00000027725lsm55893.333Oryzias_latipes
ENSUMAG00000002625LSM56882.828ENSORLG00020003019lsm59882.828Oryzias_latipes_hni
ENSUMAG00000002625LSM56592.308ENSORLG00015003338lsm510092.308Oryzias_latipes_hsok
ENSUMAG00000002625LSM56591.209ENSOMEG00000001078lsm510091.209Oryzias_melastigma
ENSUMAG00000002625LSM56598.901ENSOGAG00000013892LSM510098.901Otolemur_garnettii
ENSUMAG00000002625LSM56598.901ENSOARG00000006944LSM510098.901Ovis_aries
ENSUMAG00000002625LSM56598.901ENSPPAG00000003697-10098.901Pan_paniscus
ENSUMAG00000002625LSM56598.901ENSPPRG00000002550LSM510098.901Panthera_pardus
ENSUMAG00000002625LSM56598.901ENSPTIG00000015604LSM510098.901Panthera_tigris_altaica
ENSUMAG00000002625LSM56598.901ENSPTRG00000019057LSM510098.901Pan_troglodytes
ENSUMAG00000002625LSM56582.418ENSPTRG00000049488-10084.615Pan_troglodytes
ENSUMAG00000002625LSM56588.889ENSPANG00000032538-10088.889Papio_anubis
ENSUMAG00000002625LSM56595.556ENSPANG00000033477-9995.556Papio_anubis
ENSUMAG00000002625LSM56598.901ENSPANG00000032179-10098.901Papio_anubis
ENSUMAG00000002625LSM56593.407ENSPKIG00000011910lsm510093.407Paramormyrops_kingsleyae
ENSUMAG00000002625LSM553100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSUMAG00000002625LSM56572.222ENSPEMG00000022375-9972.222Peromyscus_maniculatus_bairdii
ENSUMAG00000002625LSM56593.407ENSPFOG00000001433lsm510093.407Poecilia_formosa
ENSUMAG00000002625LSM56593.407ENSPLAG00000009665lsm510093.407Poecilia_latipinna
ENSUMAG00000002625LSM56593.407ENSPMEG00000022265lsm510093.407Poecilia_mexicana
ENSUMAG00000002625LSM56595.604ENSPPYG00000017661LSM510095.604Pongo_abelii
ENSUMAG00000002625LSM558100.000ENSPCAG00000013740LSM5100100.000Procavia_capensis
ENSUMAG00000002625LSM56598.901ENSPVAG00000009786LSM510098.901Pteropus_vampyrus
ENSUMAG00000002625LSM56394.253ENSPNYG00000022236lsm59994.253Pundamilia_nyererei
ENSUMAG00000002625LSM56592.308ENSPNAG00000001887lsm510092.308Pygocentrus_nattereri
ENSUMAG00000002625LSM56598.901ENSRNOG00000042126Lsm510098.901Rattus_norvegicus
ENSUMAG00000002625LSM56594.565ENSRNOG00000027305AABR07065089.110094.565Rattus_norvegicus
ENSUMAG00000002625LSM56598.901ENSRBIG00000030340-10098.901Rhinopithecus_bieti
ENSUMAG00000002625LSM56597.802ENSRBIG00000024431-10097.802Rhinopithecus_bieti
ENSUMAG00000002625LSM56598.901ENSRBIG00000027803-10098.901Rhinopithecus_bieti
ENSUMAG00000002625LSM56598.901ENSRBIG00000030714-10098.901Rhinopithecus_bieti
ENSUMAG00000002625LSM56598.901ENSRROG00000004655-10098.901Rhinopithecus_roxellana
ENSUMAG00000002625LSM56598.901ENSRROG00000023884-10098.901Rhinopithecus_roxellana
ENSUMAG00000002625LSM56598.901ENSRROG00000042782-10098.901Rhinopithecus_roxellana
ENSUMAG00000002625LSM55551.220YER146W-8851.220Saccharomyces_cerevisiae
ENSUMAG00000002625LSM56598.901ENSSBOG00000012312LSM510098.901Saimiri_boliviensis_boliviensis
ENSUMAG00000002625LSM56596.703ENSSBOG00000019124-10096.703Saimiri_boliviensis_boliviensis
ENSUMAG00000002625LSM56577.778ENSSBOG00000034794-9977.778Saimiri_boliviensis_boliviensis
ENSUMAG00000002625LSM56593.407ENSSFOG00015010099lsm510093.407Scleropages_formosus
ENSUMAG00000002625LSM56560.000ENSSMAG00000007895lsm59860.000Scophthalmus_maximus
ENSUMAG00000002625LSM56593.407ENSSLDG00000025242lsm510093.407Seriola_lalandi_dorsalis
ENSUMAG00000002625LSM56075.904ENSSLDG00000008014-9875.904Seriola_lalandi_dorsalis
ENSUMAG00000002625LSM56571.111ENSSARG00000003330LSM59971.111Sorex_araneus
ENSUMAG00000002625LSM56596.703ENSSPUG00000002690LSM510096.703Sphenodon_punctatus
ENSUMAG00000002625LSM56560.000ENSSPAG00000005435lsm59860.000Stegastes_partitus
ENSUMAG00000002625LSM55088.406ENSSSCG00000029661-9688.406Sus_scrofa
ENSUMAG00000002625LSM56598.901ENSSSCG00000026064-10098.901Sus_scrofa
ENSUMAG00000002625LSM56595.604ENSTGUG00000017539LSM510095.604Taeniopygia_guttata
ENSUMAG00000002625LSM55687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSUMAG00000002625LSM56394.253ENSTNIG00000008695lsm59994.253Tetraodon_nigroviridis
ENSUMAG00000002625LSM56598.901ENSTBEG00000004876LSM510098.901Tupaia_belangeri
ENSUMAG00000002625LSM56598.901ENSTTRG00000004237LSM510098.901Tursiops_truncatus
ENSUMAG00000002625LSM56598.901ENSVPAG00000009985LSM510098.901Vicugna_pacos
ENSUMAG00000002625LSM56598.901ENSVVUG00000021311LSM510098.901Vulpes_vulpes
ENSUMAG00000002625LSM55995.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSUMAG00000002625LSM56593.407ENSXMAG00000029988lsm510093.407Xiphophorus_maculatus

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