EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000002947 (Gene tree)
Gene ID: 103664120
Gene Symbol: MBD1
Alias: -
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 45752 bases
Position: chrKK498513.1:34641434-34687185
Accession: 103664120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000003620	MBD	PF01429.19	3.2e-16	1	1
ENSUMAP00000003605	MBD	PF01429.19	3.3e-16	1	1
ENSUMAP00000003596	MBD	PF01429.19	4.1e-16	1	1
ENSUMAP00000003579	MBD	PF01429.19	4.7e-16	1	1
ENSUMAP00000003553	MBD	PF01429.19	4.8e-16	1	1
ENSUMAP00000003567	MBD	PF01429.19	4.9e-16	1	1
ENSUMAP00000003546	MBD	PF01429.19	5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000004395	MBD1-204	2798	-	ENSUMAP00000003579	882 (aa)	-	-
ENSUMAT00000004412	MBD1-205	2511	-	ENSUMAP00000003596	744 (aa)	-	-
ENSUMAT00000004382	MBD1-203	3227	-	ENSUMAP00000003567	895 (aa)	-	-
ENSUMAT00000004363	MBD1-202	3233	-	ENSUMAP00000003553	897 (aa)	-	-
ENSUMAT00000004422	MBD1-206	2117	XM_008692019	ENSUMAP00000003605	645 (aa)	XP_008690241	-
ENSUMAT00000004441	MBD1-207	2008	XM_008691970	ENSUMAP00000003620	607 (aa)	XP_008690192	UPI0004E009CE
ENSUMAT00000004355	MBD1-201	3302	-	ENSUMAP00000003546	920 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000002947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000002947's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000002947	MBD1	100	87.150	ENSG00000141644	MBD1	99	92.715	Homo_sapiens
ENSUMAG00000002947	MBD1	100	95.095	ENSAMEG00000000238	MBD1	95	97.933	Ailuropoda_melanoleuca
ENSUMAG00000002947	MBD1	62	34.314	ENSAOCG00000020272	mbd1b	52	31.494	Amphiprion_ocellaris
ENSUMAG00000002947	MBD1	62	34.314	ENSAPEG00000023230	mbd1b	52	31.494	Amphiprion_percula
ENSUMAG00000002947	MBD1	69	30.958	ENSATEG00000009608	mbd1b	52	31.320	Anabas_testudineus
ENSUMAG00000002947	MBD1	63	44.310	ENSACAG00000006091	-	100	44.310	Anolis_carolinensis
ENSUMAG00000002947	MBD1	98	86.195	ENSANAG00000036253	MBD1	99	85.692	Aotus_nancymaae
ENSUMAG00000002947	MBD1	59	36.364	ENSACLG00000021383	mbd1b	50	37.931	Astatotilapia_calliptera
ENSUMAG00000002947	MBD1	100	88.962	ENSBTAG00000003801	MBD1	100	88.468	Bos_taurus
ENSUMAG00000002947	MBD1	98	86.364	ENSCJAG00000004959	MBD1	99	84.399	Callithrix_jacchus
ENSUMAG00000002947	MBD1	100	91.297	ENSCAFG00000018928	MBD1	96	94.118	Canis_familiaris
ENSUMAG00000002947	MBD1	98	93.207	ENSCAFG00020024272	MBD1	98	93.207	Canis_lupus_dingo
ENSUMAG00000002947	MBD1	100	88.468	ENSCHIG00000021134	MBD1	100	88.138	Capra_hircus
ENSUMAG00000002947	MBD1	98	86.532	ENSTSYG00000000509	MBD1	98	85.945	Carlito_syrichta
ENSUMAG00000002947	MBD1	99	63.018	ENSCAPG00000015782	MBD1	100	68.165	Cavia_aperea
ENSUMAG00000002947	MBD1	100	67.077	ENSCPOG00000001671	MBD1	100	70.807	Cavia_porcellus
ENSUMAG00000002947	MBD1	100	84.330	ENSCCAG00000034600	MBD1	90	84.343	Cebus_capucinus
ENSUMAG00000002947	MBD1	100	87.479	ENSCATG00000029959	MBD1	100	88.138	Cercocebus_atys
ENSUMAG00000002947	MBD1	100	80.063	ENSCLAG00000007457	MBD1	87	83.683	Chinchilla_lanigera
ENSUMAG00000002947	MBD1	100	87.315	ENSCSAG00000018070	MBD1	100	87.974	Chlorocebus_sabaeus
ENSUMAG00000002947	MBD1	100	87.315	ENSCANG00000033425	MBD1	100	87.974	Colobus_angolensis_palliatus
ENSUMAG00000002947	MBD1	100	73.977	ENSCGRG00001014843	Mbd1	100	72.609	Cricetulus_griseus_chok1gshd
ENSUMAG00000002947	MBD1	99	51.274	ENSCGRG00000014135	Mbd1	94	66.551	Cricetulus_griseus_crigri
ENSUMAG00000002947	MBD1	100	78.915	ENSDNOG00000015998	MBD1	99	81.717	Dasypus_novemcinctus
ENSUMAG00000002947	MBD1	90	78.116	ENSDORG00000013917	Mbd1	97	77.812	Dipodomys_ordii
ENSUMAG00000002947	MBD1	98	91.246	ENSEASG00005003857	MBD1	99	90.620	Equus_asinus_asinus
ENSUMAG00000002947	MBD1	100	91.433	ENSECAG00000011497	MBD1	80	91.433	Equus_caballus
ENSUMAG00000002947	MBD1	61	48.101	ENSELUG00000004375	mbd1b	51	34.434	Esox_lucius
ENSUMAG00000002947	MBD1	98	96.465	ENSFCAG00000015730	MBD1	99	95.548	Felis_catus
ENSUMAG00000002947	MBD1	99	70.181	ENSFDAG00000011085	MBD1	98	69.375	Fukomys_damarensis
ENSUMAG00000002947	MBD1	100	87.150	ENSGGOG00000016966	MBD1	100	87.809	Gorilla_gorilla
ENSUMAG00000002947	MBD1	59	36.416	ENSHBUG00000014270	mbd1b	50	37.438	Haplochromis_burtoni
ENSUMAG00000002947	MBD1	100	83.855	ENSHGLG00000008740	MBD1	100	83.526	Heterocephalus_glaber_female
ENSUMAG00000002947	MBD1	81	89.015	ENSHGLG00100005198	MBD1	100	88.973	Heterocephalus_glaber_male
ENSUMAG00000002947	MBD1	57	38.065	ENSIPUG00000015243	-	51	37.278	Ictalurus_punctatus
ENSUMAG00000002947	MBD1	100	81.848	ENSSTOG00000007780	MBD1	100	81.494	Ictidomys_tridecemlineatus
ENSUMAG00000002947	MBD1	98	66.778	ENSJJAG00000022859	Mbd1	92	76.547	Jaculus_jaculus
ENSUMAG00000002947	MBD1	68	30.090	ENSKMAG00000020760	mbd1b	54	30.856	Kryptolebias_marmoratus
ENSUMAG00000002947	MBD1	65	40.000	ENSLACG00000002414	-	52	62.500	Latimeria_chalumnae
ENSUMAG00000002947	MBD1	99	75.993	ENSLAFG00000031328	MBD1	97	77.152	Loxodonta_africana
ENSUMAG00000002947	MBD1	100	88.138	ENSMFAG00000026335	MBD1	100	87.644	Macaca_fascicularis
ENSUMAG00000002947	MBD1	100	84.652	ENSMMUG00000009050	MBD1	99	86.486	Macaca_mulatta
ENSUMAG00000002947	MBD1	100	88.138	ENSMNEG00000038822	MBD1	100	87.644	Macaca_nemestrina
ENSUMAG00000002947	MBD1	100	87.315	ENSMLEG00000043121	MBD1	100	87.974	Mandrillus_leucophaeus
ENSUMAG00000002947	MBD1	62	36.723	ENSMAMG00000023341	-	51	59.155	Mastacembelus_armatus
ENSUMAG00000002947	MBD1	59	36.364	ENSMZEG00005010421	mbd1b	50	37.931	Maylandia_zebra
ENSUMAG00000002947	MBD1	100	86.526	ENSMICG00000006414	MBD1	100	86.688	Microcebus_murinus
ENSUMAG00000002947	MBD1	64	43.210	ENSMODG00000001286	-	57	43.704	Monodelphis_domestica
ENSUMAG00000002947	MBD1	99	67.460	ENSMUSG00000024561	Mbd1	97	65.723	Mus_musculus
ENSUMAG00000002947	MBD1	100	67.195	MGP_PahariEiJ_G0019128	Mbd1	100	67.670	Mus_pahari
ENSUMAG00000002947	MBD1	98	68.608	MGP_SPRETEiJ_G0023304	Mbd1	99	67.799	Mus_spretus
ENSUMAG00000002947	MBD1	100	91.456	ENSMPUG00000008843	MBD1	96	94.277	Mustela_putorius_furo
ENSUMAG00000002947	MBD1	100	85.918	ENSMLUG00000008286	MBD1	96	88.394	Myotis_lucifugus
ENSUMAG00000002947	MBD1	98	65.625	ENSNGAG00000011412	Mbd1	96	65.132	Nannospalax_galili
ENSUMAG00000002947	MBD1	98	68.687	ENSNLEG00000032711	-	83	75.405	Nomascus_leucogenys
ENSUMAG00000002947	MBD1	100	87.809	ENSNLEG00000011661	-	100	87.315	Nomascus_leucogenys
ENSUMAG00000002947	MBD1	100	73.311	ENSOPRG00000007647	MBD1	100	73.311	Ochotona_princeps
ENSUMAG00000002947	MBD1	99	70.266	ENSODEG00000018451	MBD1	92	80.130	Octodon_degus
ENSUMAG00000002947	MBD1	59	36.686	ENSONIG00000020289	mbd1b	50	37.561	Oreochromis_niloticus
ENSUMAG00000002947	MBD1	85	47.932	ENSOANG00000014593	-	100	47.842	Ornithorhynchus_anatinus
ENSUMAG00000002947	MBD1	97	82.035	ENSOCUG00000006554	MBD1	99	82.035	Oryctolagus_cuniculus
ENSUMAG00000002947	MBD1	100	81.591	ENSOGAG00000003784	MBD1	94	83.732	Otolemur_garnettii
ENSUMAG00000002947	MBD1	100	84.834	ENSOARG00000004218	MBD1	93	88.387	Ovis_aries
ENSUMAG00000002947	MBD1	100	86.985	ENSPPAG00000038886	MBD1	100	87.644	Pan_paniscus
ENSUMAG00000002947	MBD1	100	96.705	ENSPPRG00000021387	MBD1	100	96.705	Panthera_pardus
ENSUMAG00000002947	MBD1	100	96.540	ENSPTIG00000021231	MBD1	100	96.540	Panthera_tigris_altaica
ENSUMAG00000002947	MBD1	100	86.985	ENSPTRG00000010021	MBD1	100	87.644	Pan_troglodytes
ENSUMAG00000002947	MBD1	98	87.037	ENSPANG00000010867	MBD1	99	86.645	Papio_anubis
ENSUMAG00000002947	MBD1	99	59.612	ENSPEMG00000022630	Mbd1	89	68.683	Peromyscus_maniculatus_bairdii
ENSUMAG00000002947	MBD1	96	47.471	ENSPCIG00000027937	-	79	46.774	Phascolarctos_cinereus
ENSUMAG00000002947	MBD1	51	53.261	ENSPFOG00000007511	mbd1b	53	31.422	Poecilia_formosa
ENSUMAG00000002947	MBD1	51	53.261	ENSPLAG00000021258	mbd1b	54	31.364	Poecilia_latipinna
ENSUMAG00000002947	MBD1	54	53.261	ENSPMEG00000024145	mbd1b	51	53.261	Poecilia_mexicana
ENSUMAG00000002947	MBD1	51	53.261	ENSPREG00000021805	mbd1b	54	31.364	Poecilia_reticulata
ENSUMAG00000002947	MBD1	100	88.468	ENSPPYG00000009158	MBD1	91	87.974	Pongo_abelii
ENSUMAG00000002947	MBD1	99	78.218	ENSPCAG00000001648	MBD1	93	87.879	Procavia_capensis
ENSUMAG00000002947	MBD1	100	88.797	ENSPCOG00000012450	MBD1	100	88.797	Propithecus_coquereli
ENSUMAG00000002947	MBD1	99	51.212	ENSRNOG00000024104	Mbd1	89	69.295	Rattus_norvegicus
ENSUMAG00000002947	MBD1	100	79.077	ENSRBIG00000041294	MBD1	100	79.736	Rhinopithecus_bieti
ENSUMAG00000002947	MBD1	100	86.820	ENSRROG00000032517	MBD1	100	87.479	Rhinopithecus_roxellana
ENSUMAG00000002947	MBD1	98	87.542	ENSSBOG00000027169	MBD1	90	87.037	Saimiri_boliviensis_boliviensis
ENSUMAG00000002947	MBD1	76	45.940	ENSSHAG00000003661	-	100	47.447	Sarcophilus_harrisii
ENSUMAG00000002947	MBD1	100	88.468	ENSSSCG00000004516	MBD1	100	87.974	Sus_scrofa
ENSUMAG00000002947	MBD1	66	30.549	ENSTRUG00000013422	mbd1b	52	30.217	Takifugu_rubripes
ENSUMAG00000002947	MBD1	68	79.583	ENSTBEG00000012651	-	68	79.583	Tupaia_belangeri
ENSUMAG00000002947	MBD1	100	88.797	ENSTTRG00000015523	MBD1	100	88.797	Tursiops_truncatus
ENSUMAG00000002947	MBD1	100	96.046	ENSUAMG00000004752	MBD1	100	96.046	Ursus_americanus