EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000003073 (Gene tree)
Gene ID: 103676593
Gene Symbol: LSM8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 5805 bases
Position: chrKK498719.1:2397650-2403454
Accession: 103676593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000003722	LSM	PF01423.22	3.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000004553	LSM8-201	952	-	ENSUMAP00000003722	94 (aa)	XP_008704022	UPI0004DFF937

Gene Model

Click here to download ENSUMAG00000003073's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03018	RNA degradation	KEGG
umr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000003073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000003073	LSM8	80	36.000	ENSUMAG00000009132	LSM1	56	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000003073	LSM8	94	96.591	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSUMAG00000003073	LSM8	94	92.045	ENSAPOG00000008649	lsm8	92	92.045	Acanthochromis_polyacanthus
ENSUMAG00000003073	LSM8	94	96.591	ENSAMEG00000001162	LSM8	92	96.591	Ailuropoda_melanoleuca
ENSUMAG00000003073	LSM8	80	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSUMAG00000003073	LSM8	94	92.045	ENSAOCG00000013926	lsm8	92	92.045	Amphiprion_ocellaris
ENSUMAG00000003073	LSM8	94	92.045	ENSAPEG00000023502	lsm8	92	92.045	Amphiprion_percula
ENSUMAG00000003073	LSM8	80	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSUMAG00000003073	LSM8	97	94.505	ENSAPLG00000005115	LSM8	92	94.505	Anas_platyrhynchos
ENSUMAG00000003073	LSM8	94	96.591	ENSANAG00000027771	LSM8	100	97.297	Aotus_nancymaae
ENSUMAG00000003073	LSM8	94	92.045	ENSACLG00000011253	lsm8	92	92.045	Astatotilapia_calliptera
ENSUMAG00000003073	LSM8	94	94.318	ENSAMXG00000042902	lsm8	92	94.318	Astyanax_mexicanus
ENSUMAG00000003073	LSM8	94	96.591	ENSBTAG00000012649	LSM8	92	96.591	Bos_taurus
ENSUMAG00000003073	LSM8	87	58.537	WBGene00003082	lsm-8	84	58.537	Caenorhabditis_elegans
ENSUMAG00000003073	LSM8	94	96.591	ENSCJAG00000046406	LSM8	100	97.297	Callithrix_jacchus
ENSUMAG00000003073	LSM8	93	96.552	ENSCAFG00000016459	LSM8	88	96.552	Canis_familiaris
ENSUMAG00000003073	LSM8	94	96.591	ENSCAFG00020007643	-	92	96.591	Canis_lupus_dingo
ENSUMAG00000003073	LSM8	94	84.091	ENSCAFG00020012800	-	69	84.091	Canis_lupus_dingo
ENSUMAG00000003073	LSM8	100	97.872	ENSCHIG00000014201	LSM8	100	97.872	Capra_hircus
ENSUMAG00000003073	LSM8	94	96.591	ENSTSYG00000032434	LSM8	92	96.591	Carlito_syrichta
ENSUMAG00000003073	LSM8	79	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSUMAG00000003073	LSM8	94	96.591	ENSCPOG00000035673	LSM8	92	96.591	Cavia_porcellus
ENSUMAG00000003073	LSM8	94	96.591	ENSCCAG00000021329	LSM8	100	97.297	Cebus_capucinus
ENSUMAG00000003073	LSM8	94	96.591	ENSCATG00000045302	LSM8	100	97.297	Cercocebus_atys
ENSUMAG00000003073	LSM8	94	96.591	ENSCLAG00000003726	LSM8	92	96.591	Chinchilla_lanigera
ENSUMAG00000003073	LSM8	94	96.591	ENSCSAG00000010802	-	92	96.591	Chlorocebus_sabaeus
ENSUMAG00000003073	LSM8	94	95.455	ENSCSAG00000019007	-	92	95.455	Chlorocebus_sabaeus
ENSUMAG00000003073	LSM8	99	94.624	ENSCPBG00000008154	LSM8	95	94.624	Chrysemys_picta_bellii
ENSUMAG00000003073	LSM8	94	75.000	ENSCING00000024877	-	92	75.000	Ciona_intestinalis
ENSUMAG00000003073	LSM8	94	96.591	ENSCANG00000040728	LSM8	100	97.297	Colobus_angolensis_palliatus
ENSUMAG00000003073	LSM8	94	96.591	ENSCGRG00001000450	Lsm8	92	96.591	Cricetulus_griseus_chok1gshd
ENSUMAG00000003073	LSM8	90	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSUMAG00000003073	LSM8	77	95.833	ENSCSEG00000004164	lsm8	79	95.833	Cynoglossus_semilaevis
ENSUMAG00000003073	LSM8	94	90.909	ENSCVAG00000020547	lsm8	92	90.909	Cyprinodon_variegatus
ENSUMAG00000003073	LSM8	90	95.294	ENSDARG00000091656	lsm8	89	95.294	Danio_rerio
ENSUMAG00000003073	LSM8	94	96.591	ENSDNOG00000034613	LSM8	92	96.591	Dasypus_novemcinctus
ENSUMAG00000003073	LSM8	94	96.591	ENSDORG00000027868	Lsm8	92	96.591	Dipodomys_ordii
ENSUMAG00000003073	LSM8	94	67.045	FBgn0035271	CG2021	93	67.045	Drosophila_melanogaster
ENSUMAG00000003073	LSM8	94	95.455	ENSETEG00000011594	LSM8	92	95.455	Echinops_telfairi
ENSUMAG00000003073	LSM8	79	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSUMAG00000003073	LSM8	90	100.000	ENSEASG00005008932	LSM8	55	100.000	Equus_asinus_asinus
ENSUMAG00000003073	LSM8	100	98.936	ENSECAG00000024025	LSM8	85	98.936	Equus_caballus
ENSUMAG00000003073	LSM8	94	90.909	ENSELUG00000010138	lsm8	92	90.909	Esox_lucius
ENSUMAG00000003073	LSM8	85	70.000	ENSFCAG00000044794	-	81	70.000	Felis_catus
ENSUMAG00000003073	LSM8	94	96.591	ENSFCAG00000036620	-	92	96.591	Felis_catus
ENSUMAG00000003073	LSM8	94	95.455	ENSFALG00000010023	LSM8	92	95.455	Ficedula_albicollis
ENSUMAG00000003073	LSM8	94	96.591	ENSFDAG00000019530	LSM8	92	96.591	Fukomys_damarensis
ENSUMAG00000003073	LSM8	94	92.045	ENSFHEG00000013729	lsm8	92	92.045	Fundulus_heteroclitus
ENSUMAG00000003073	LSM8	94	95.455	ENSGALG00000009110	LSM8	92	95.455	Gallus_gallus
ENSUMAG00000003073	LSM8	94	90.909	ENSGAFG00000001135	lsm8	92	90.909	Gambusia_affinis
ENSUMAG00000003073	LSM8	99	94.624	ENSGAGG00000017366	LSM8	95	94.624	Gopherus_agassizii
ENSUMAG00000003073	LSM8	94	96.591	ENSGGOG00000041883	LSM8	92	96.591	Gorilla_gorilla
ENSUMAG00000003073	LSM8	94	92.045	ENSHBUG00000003646	lsm8	92	92.045	Haplochromis_burtoni
ENSUMAG00000003073	LSM8	64	95.000	ENSHGLG00000001988	-	87	95.000	Heterocephalus_glaber_female
ENSUMAG00000003073	LSM8	94	90.909	ENSHGLG00000019782	-	92	90.909	Heterocephalus_glaber_female
ENSUMAG00000003073	LSM8	93	93.103	ENSHGLG00100003934	-	87	93.103	Heterocephalus_glaber_male
ENSUMAG00000003073	LSM8	94	92.045	ENSHGLG00100012166	-	92	92.045	Heterocephalus_glaber_male
ENSUMAG00000003073	LSM8	94	90.909	ENSHCOG00000005037	lsm8	92	90.909	Hippocampus_comes
ENSUMAG00000003073	LSM8	94	94.318	ENSIPUG00000019811	NAA38	92	94.318	Ictalurus_punctatus
ENSUMAG00000003073	LSM8	94	85.227	ENSSTOG00000034801	-	81	85.227	Ictidomys_tridecemlineatus
ENSUMAG00000003073	LSM8	94	96.591	ENSSTOG00000009039	LSM8	92	96.591	Ictidomys_tridecemlineatus
ENSUMAG00000003073	LSM8	94	96.591	ENSJJAG00000009031	Lsm8	91	96.591	Jaculus_jaculus
ENSUMAG00000003073	LSM8	94	92.045	ENSKMAG00000018983	lsm8	92	92.045	Kryptolebias_marmoratus
ENSUMAG00000003073	LSM8	94	92.045	ENSLACG00000010231	LSM8	92	92.045	Latimeria_chalumnae
ENSUMAG00000003073	LSM8	94	93.182	ENSLOCG00000015580	lsm8	92	93.182	Lepisosteus_oculatus
ENSUMAG00000003073	LSM8	90	100.000	ENSLAFG00000011242	LSM8	88	100.000	Loxodonta_africana
ENSUMAG00000003073	LSM8	94	96.591	ENSMFAG00000035798	LSM8	100	97.297	Macaca_fascicularis
ENSUMAG00000003073	LSM8	94	94.318	ENSMFAG00000013044	-	92	94.318	Macaca_fascicularis
ENSUMAG00000003073	LSM8	94	96.591	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSUMAG00000003073	LSM8	94	96.591	ENSMNEG00000036764	-	100	97.297	Macaca_nemestrina
ENSUMAG00000003073	LSM8	80	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSUMAG00000003073	LSM8	94	96.591	ENSMLEG00000035828	-	100	97.297	Mandrillus_leucophaeus
ENSUMAG00000003073	LSM8	94	81.818	ENSMLEG00000039324	-	91	81.818	Mandrillus_leucophaeus
ENSUMAG00000003073	LSM8	80	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSUMAG00000003073	LSM8	94	92.045	ENSMZEG00005019138	lsm8	92	92.045	Maylandia_zebra
ENSUMAG00000003073	LSM8	94	95.455	ENSMGAG00000008808	LSM8	92	95.455	Meleagris_gallopavo
ENSUMAG00000003073	LSM8	77	93.056	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSUMAG00000003073	LSM8	100	73.958	ENSMAUG00000015356	-	100	73.958	Mesocricetus_auratus
ENSUMAG00000003073	LSM8	94	88.636	ENSMAUG00000015721	-	92	88.636	Mesocricetus_auratus
ENSUMAG00000003073	LSM8	94	96.591	ENSMICG00000042730	LSM8	92	96.591	Microcebus_murinus
ENSUMAG00000003073	LSM8	94	96.591	ENSMOCG00000001688	Lsm8	92	96.591	Microtus_ochrogaster
ENSUMAG00000003073	LSM8	80	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSUMAG00000003073	LSM8	78	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSUMAG00000003073	LSM8	94	93.182	ENSMALG00000000405	lsm8	92	93.182	Monopterus_albus
ENSUMAG00000003073	LSM8	94	96.591	MGP_CAROLIEiJ_G0028125	-	92	96.591	Mus_caroli
ENSUMAG00000003073	LSM8	94	96.591	ENSMUSG00000044155	Lsm8	92	96.591	Mus_musculus
ENSUMAG00000003073	LSM8	94	96.591	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSUMAG00000003073	LSM8	94	96.591	MGP_SPRETEiJ_G0029125	-	92	96.591	Mus_spretus
ENSUMAG00000003073	LSM8	94	96.591	ENSMLUG00000006837	-	92	96.591	Myotis_lucifugus
ENSUMAG00000003073	LSM8	94	95.455	ENSMLUG00000027762	-	92	95.455	Myotis_lucifugus
ENSUMAG00000003073	LSM8	94	96.591	ENSNGAG00000016554	Lsm8	92	96.591	Nannospalax_galili
ENSUMAG00000003073	LSM8	94	92.045	ENSNBRG00000014441	lsm8	92	92.045	Neolamprologus_brichardi
ENSUMAG00000003073	LSM8	94	96.591	ENSNLEG00000011768	LSM8	92	96.591	Nomascus_leucogenys
ENSUMAG00000003073	LSM8	94	84.091	ENSMEUG00000007801	LSM8	92	84.091	Notamacropus_eugenii
ENSUMAG00000003073	LSM8	90	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSUMAG00000003073	LSM8	89	76.744	ENSODEG00000020290	-	100	76.744	Octodon_degus
ENSUMAG00000003073	LSM8	94	96.591	ENSODEG00000000418	-	92	96.591	Octodon_degus
ENSUMAG00000003073	LSM8	94	96.591	ENSOANG00000014536	LSM8	92	96.591	Ornithorhynchus_anatinus
ENSUMAG00000003073	LSM8	90	100.000	ENSOCUG00000017359	LSM8	88	100.000	Oryctolagus_cuniculus
ENSUMAG00000003073	LSM8	77	97.222	ENSORLG00000017432	lsm8	77	97.222	Oryzias_latipes
ENSUMAG00000003073	LSM8	77	97.222	ENSORLG00020004376	lsm8	77	97.222	Oryzias_latipes_hni
ENSUMAG00000003073	LSM8	94	92.045	ENSORLG00015003757	lsm8	92	92.045	Oryzias_latipes_hsok
ENSUMAG00000003073	LSM8	73	97.101	ENSOMEG00000022509	lsm8	83	93.333	Oryzias_melastigma
ENSUMAG00000003073	LSM8	94	96.591	ENSOGAG00000013377	LSM8	92	96.591	Otolemur_garnettii
ENSUMAG00000003073	LSM8	94	96.591	ENSOARG00000017974	LSM8	92	96.591	Ovis_aries
ENSUMAG00000003073	LSM8	80	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSUMAG00000003073	LSM8	94	96.591	ENSPPRG00000006444	LSM8	92	96.591	Panthera_pardus
ENSUMAG00000003073	LSM8	94	96.591	ENSPTIG00000004722	LSM8	92	96.591	Panthera_tigris_altaica
ENSUMAG00000003073	LSM8	80	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSUMAG00000003073	LSM8	94	93.182	ENSPANG00000019395	-	92	93.182	Papio_anubis
ENSUMAG00000003073	LSM8	94	96.591	ENSPANG00000035470	-	100	97.297	Papio_anubis
ENSUMAG00000003073	LSM8	98	92.391	ENSPKIG00000006092	lsm8	93	92.391	Paramormyrops_kingsleyae
ENSUMAG00000003073	LSM8	80	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSUMAG00000003073	LSM8	80	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSUMAG00000003073	LSM8	79	97.297	ENSPEMG00000009153	Lsm8	100	97.297	Peromyscus_maniculatus_bairdii
ENSUMAG00000003073	LSM8	90	96.471	ENSPCIG00000021467	LSM8	89	96.471	Phascolarctos_cinereus
ENSUMAG00000003073	LSM8	94	90.909	ENSPFOG00000012340	lsm8	92	90.909	Poecilia_formosa
ENSUMAG00000003073	LSM8	93	94.253	ENSPLAG00000000516	lsm8	91	94.253	Poecilia_latipinna
ENSUMAG00000003073	LSM8	94	90.909	ENSPMEG00000022567	lsm8	92	90.909	Poecilia_mexicana
ENSUMAG00000003073	LSM8	78	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSUMAG00000003073	LSM8	94	96.591	ENSPPYG00000017942	LSM8	92	96.591	Pongo_abelii
ENSUMAG00000003073	LSM8	89	77.381	ENSPCOG00000017982	-	86	77.381	Propithecus_coquereli
ENSUMAG00000003073	LSM8	94	96.591	ENSPCOG00000003309	-	92	96.591	Propithecus_coquereli
ENSUMAG00000003073	LSM8	90	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSUMAG00000003073	LSM8	94	92.045	ENSPNYG00000011448	lsm8	92	92.045	Pundamilia_nyererei
ENSUMAG00000003073	LSM8	94	94.318	ENSPNAG00000010252	lsm8	92	94.318	Pygocentrus_nattereri
ENSUMAG00000003073	LSM8	94	96.591	ENSRNOG00000058677	Lsm8	92	96.591	Rattus_norvegicus
ENSUMAG00000003073	LSM8	94	96.591	ENSRBIG00000032851	LSM8	100	97.297	Rhinopithecus_bieti
ENSUMAG00000003073	LSM8	94	96.591	ENSRROG00000039618	LSM8	100	97.297	Rhinopithecus_roxellana
ENSUMAG00000003073	LSM8	94	96.591	ENSSBOG00000023223	LSM8	100	97.297	Saimiri_boliviensis_boliviensis
ENSUMAG00000003073	LSM8	94	96.591	ENSSHAG00000018435	-	92	96.591	Sarcophilus_harrisii
ENSUMAG00000003073	LSM8	94	90.909	ENSSFOG00015004412	lsm8	92	90.909	Scleropages_formosus
ENSUMAG00000003073	LSM8	80	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSUMAG00000003073	LSM8	94	92.045	ENSSDUG00000014702	lsm8	92	92.045	Seriola_dumerili
ENSUMAG00000003073	LSM8	80	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSUMAG00000003073	LSM8	77	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSUMAG00000003073	LSM8	94	96.591	ENSSPUG00000017419	LSM8	92	96.591	Sphenodon_punctatus
ENSUMAG00000003073	LSM8	94	92.045	ENSSPAG00000021422	lsm8	92	92.045	Stegastes_partitus
ENSUMAG00000003073	LSM8	94	96.591	ENSSSCG00000021652	LSM8	92	96.591	Sus_scrofa
ENSUMAG00000003073	LSM8	94	95.455	ENSTGUG00000004730	-	92	95.455	Taeniopygia_guttata
ENSUMAG00000003073	LSM8	94	94.318	ENSTGUG00000016823	-	92	94.318	Taeniopygia_guttata
ENSUMAG00000003073	LSM8	94	92.045	ENSTRUG00000025192	lsm8	92	92.045	Takifugu_rubripes
ENSUMAG00000003073	LSM8	94	92.045	ENSTNIG00000002864	lsm8	92	92.045	Tetraodon_nigroviridis
ENSUMAG00000003073	LSM8	94	96.591	ENSTTRG00000001023	LSM8	92	96.591	Tursiops_truncatus
ENSUMAG00000003073	LSM8	100	100.000	ENSUAMG00000006943	-	98	100.000	Ursus_americanus
ENSUMAG00000003073	LSM8	94	96.591	ENSVPAG00000001530	LSM8	92	96.591	Vicugna_pacos
ENSUMAG00000003073	LSM8	80	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSUMAG00000003073	LSM8	90	97.647	ENSXETG00000021829	lsm8	88	97.647	Xenopus_tropicalis
ENSUMAG00000003073	LSM8	90	92.941	ENSXCOG00000012938	lsm8	89	92.941	Xiphophorus_couchianus
ENSUMAG00000003073	LSM8	94	90.909	ENSXMAG00000025919	lsm8	92	90.909	Xiphophorus_maculatus