EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSUMAG00000003676 (Gene tree)
Gene ID
103660911
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Ursus_maritimus
Status
putative
Strand
Minus strand
Length
38381 bases
Position
chrKK498505.1:2978549-3016929
Accession
2326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUMAP00000004545CPSF73-100_CPF11718.81.9e-5511
ENSUMAP00000004553CPSF73-100_CPF11718.89e-4011
ENSUMAP00000004568CPSF73-100_CPF11718.82.5e-3911
ENSUMAP00000004568Beta-CaspPF10996.85e-3411
ENSUMAP00000004553Beta-CaspPF10996.85.1e-3411
ENSUMAP00000004545Beta-CaspPF10996.85.3e-3411
ENSUMAP00000004568Lactamase_BPF00753.272.5e-1511
ENSUMAP00000004553Lactamase_BPF00753.272.7e-1511
ENSUMAP00000004545Lactamase_BPF00753.272.9e-1511
ENSUMAP00000004545RMMBLPF07521.121.2e-2111
ENSUMAP00000004568RMMBLPF07521.121.6e-2111
ENSUMAP00000004553RMMBLPF07521.121.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUMAT00000005546CPSF3-2032405-ENSUMAP00000004568593 (aa)--
ENSUMAT00000005523CPSF3-2012417-ENSUMAP00000004545647 (aa)-UPI0003AE2D03
ENSUMAT00000005531CPSF3-2022320-ENSUMAP00000004553627 (aa)--
Gene Model
Click here to download ENSUMAG00000003676's gene model file
Pathways
Pathway IDPathway NameSource
umr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000003676's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSUMAG00000003676CPSF37737.787ENSUMAG00000002070INTS117737.787
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUMAG00000003676CPSF310099.382ENSG00000119203CPSF3100100.000Homo_sapiens
ENSUMAG00000003676CPSF37996.788ENSAPOG00000012241CPSF38896.781Acanthochromis_polyacanthus
ENSUMAG00000003676CPSF39490.323ENSAPOG00000022087cpsf39983.932Acanthochromis_polyacanthus
ENSUMAG00000003676CPSF3100100.000ENSAMEG00000008493CPSF395100.000Ailuropoda_melanoleuca
ENSUMAG00000003676CPSF39786.667ENSACIG00000023663CPSF39986.667Amphilophus_citrinellus
ENSUMAG00000003676CPSF39782.962ENSACIG00000009846cpsf39982.962Amphilophus_citrinellus
ENSUMAG00000003676CPSF39493.011ENSAOCG00000010077CPSF39985.079Amphiprion_ocellaris
ENSUMAG00000003676CPSF39490.323ENSAOCG00000022056cpsf38890.794Amphiprion_ocellaris
ENSUMAG00000003676CPSF39493.011ENSAPEG00000021167CPSF39985.397Amphiprion_percula
ENSUMAG00000003676CPSF39490.502ENSAPEG00000019526cpsf39982.047Amphiprion_percula
ENSUMAG00000003676CPSF39488.909ENSATEG00000014525CPSF39382.817Anabas_testudineus
ENSUMAG00000003676CPSF39490.502ENSATEG00000003959cpsf39983.280Anabas_testudineus
ENSUMAG00000003676CPSF310095.981ENSAPLG00000006941CPSF39595.981Anas_platyrhynchos
ENSUMAG00000003676CPSF39892.598ENSACAG00000001759CPSF39992.598Anolis_carolinensis
ENSUMAG00000003676CPSF310093.045ENSANAG00000031254CPSF39693.045Aotus_nancymaae
ENSUMAG00000003676CPSF39786.508ENSACLG00000018846CPSF39986.508Astatotilapia_calliptera
ENSUMAG00000003676CPSF39490.860ENSACLG00000014484cpsf39983.439Astatotilapia_calliptera
ENSUMAG00000003676CPSF39987.926ENSAMXG00000004786cpsf39985.533Astyanax_mexicanus
ENSUMAG00000003676CPSF310099.845ENSBTAG00000019735CPSF39599.845Bos_taurus
ENSUMAG00000003676CPSF39361.863WBGene00013460cpsf-38559.370Caenorhabditis_elegans
ENSUMAG00000003676CPSF310099.382ENSCJAG00000006276CPSF39599.382Callithrix_jacchus
ENSUMAG00000003676CPSF3100100.000ENSCAFG00000003375CPSF390100.000Canis_familiaris
ENSUMAG00000003676CPSF394100.000ENSCAFG00020026799CPSF394100.000Canis_lupus_dingo
ENSUMAG00000003676CPSF310099.845ENSCHIG00000013973CPSF39599.845Capra_hircus
ENSUMAG00000003676CPSF310099.382ENSTSYG00000002967CPSF39599.382Carlito_syrichta
ENSUMAG00000003676CPSF310097.836ENSCAPG00000013851CPSF39797.836Cavia_aperea
ENSUMAG00000003676CPSF310097.836ENSCPOG00000011299CPSF39597.836Cavia_porcellus
ENSUMAG00000003676CPSF310099.227ENSCCAG00000036730CPSF39699.227Cebus_capucinus
ENSUMAG00000003676CPSF310096.605ENSCATG00000014770CPSF393100.000Cercocebus_atys
ENSUMAG00000003676CPSF310097.682ENSCLAG00000002727CPSF39597.682Chinchilla_lanigera
ENSUMAG00000003676CPSF310091.190ENSCSAG00000007125CPSF39491.190Chlorocebus_sabaeus
ENSUMAG00000003676CPSF38872.281ENSCHOG00000000180CPSF38572.281Choloepus_hoffmanni
ENSUMAG00000003676CPSF39996.130ENSCPBG00000014074CPSF39396.130Chrysemys_picta_bellii
ENSUMAG00000003676CPSF39473.524ENSCING00000007214-9368.098Ciona_intestinalis
ENSUMAG00000003676CPSF310085.471ENSCANG00000034435CPSF39485.471Colobus_angolensis_palliatus
ENSUMAG00000003676CPSF310099.073ENSCGRG00001013134Cpsf39599.073Cricetulus_griseus_chok1gshd
ENSUMAG00000003676CPSF310099.073ENSCGRG00000018319Cpsf39599.073Cricetulus_griseus_crigri
ENSUMAG00000003676CPSF39492.294ENSCSEG00000002021CPSF39986.708Cynoglossus_semilaevis
ENSUMAG00000003676CPSF39988.080ENSCVAG00000015067CPSF39388.080Cyprinodon_variegatus
ENSUMAG00000003676CPSF39988.700ENSDARG00000027649cpsf39388.700Danio_rerio
ENSUMAG00000003676CPSF310097.994ENSDNOG00000008940CPSF39097.994Dasypus_novemcinctus
ENSUMAG00000003676CPSF39599.023ENSDORG00000014263Cpsf39499.023Dipodomys_ordii
ENSUMAG00000003676CPSF39966.977FBgn0261065Cpsf739366.977Drosophila_melanogaster
ENSUMAG00000003676CPSF39588.418ENSETEG00000003893CPSF39488.418Echinops_telfairi
ENSUMAG00000003676CPSF39487.478ENSEBUG00000009018cpsf39478.346Eptatretus_burgeri
ENSUMAG00000003676CPSF3100100.000ENSEASG00005003970CPSF395100.000Equus_asinus_asinus
ENSUMAG00000003676CPSF3100100.000ENSECAG00000019911CPSF395100.000Equus_caballus
ENSUMAG00000003676CPSF310083.153ENSEEUG00000015422CPSF39583.153Erinaceus_europaeus
ENSUMAG00000003676CPSF39987.907ENSELUG00000013775cpsf39985.512Esox_lucius
ENSUMAG00000003676CPSF310099.845ENSFCAG00000007852CPSF310099.845Felis_catus
ENSUMAG00000003676CPSF310095.518ENSFALG00000006572CPSF310095.518Ficedula_albicollis
ENSUMAG00000003676CPSF39997.209ENSFDAG00000006317CPSF39497.209Fukomys_damarensis
ENSUMAG00000003676CPSF36369.024ENSFHEG00000012186CPSF39969.024Fundulus_heteroclitus
ENSUMAG00000003676CPSF39588.850ENSFHEG00000014774cpsf39384.496Fundulus_heteroclitus
ENSUMAG00000003676CPSF39491.935ENSGMOG00000003157cpsf39386.378Gadus_morhua
ENSUMAG00000003676CPSF310094.745ENSGALG00000016424CPSF39994.646Gallus_gallus
ENSUMAG00000003676CPSF39988.062ENSGAFG00000008016CPSF39388.062Gambusia_affinis
ENSUMAG00000003676CPSF39782.989ENSGAFG00000019449cpsf39982.989Gambusia_affinis
ENSUMAG00000003676CPSF37294.218ENSGAGG00000025583CPSF39394.218Gopherus_agassizii
ENSUMAG00000003676CPSF39899.528ENSGGOG00000001757CPSF310099.528Gorilla_gorilla
ENSUMAG00000003676CPSF36381.728ENSHBUG00000014332CPSF39981.728Haplochromis_burtoni
ENSUMAG00000003676CPSF39490.860ENSHBUG00000001188cpsf39983.439Haplochromis_burtoni
ENSUMAG00000003676CPSF310096.909ENSHGLG00000000666CPSF39496.909Heterocephalus_glaber_female
ENSUMAG00000003676CPSF310096.909ENSHGLG00100007765CPSF39496.909Heterocephalus_glaber_male
ENSUMAG00000003676CPSF39490.681ENSHCOG00000007251cpsf39384.520Hippocampus_comes
ENSUMAG00000003676CPSF39491.577ENSHCOG00000015957CPSF39286.068Hippocampus_comes
ENSUMAG00000003676CPSF39986.687ENSIPUG00000023488cpsf39983.307Ictalurus_punctatus
ENSUMAG00000003676CPSF310099.382ENSSTOG00000004476CPSF39599.382Ictidomys_tridecemlineatus
ENSUMAG00000003676CPSF310097.991ENSJJAG00000023415Cpsf39597.991Jaculus_jaculus
ENSUMAG00000003676CPSF39492.473ENSKMAG00000007317CPSF39387.307Kryptolebias_marmoratus
ENSUMAG00000003676CPSF39489.606ENSKMAG00000002806cpsf39384.186Kryptolebias_marmoratus
ENSUMAG00000003676CPSF39585.765ENSLBEG00000020569cpsf38285.765Labrus_bergylta
ENSUMAG00000003676CPSF39492.844ENSLBEG00000013492CPSF39388.925Labrus_bergylta
ENSUMAG00000003676CPSF35484.688ENSLBEG00000015018-9980.161Labrus_bergylta
ENSUMAG00000003676CPSF39983.101ENSLACG00000008308CPSF39383.101Latimeria_chalumnae
ENSUMAG00000003676CPSF39988.872ENSLOCG00000016823cpsf39388.872Lepisosteus_oculatus
ENSUMAG00000003676CPSF310099.227ENSLAFG00000009467CPSF39599.227Loxodonta_africana
ENSUMAG00000003676CPSF310099.382ENSMFAG00000001339CPSF39999.381Macaca_fascicularis
ENSUMAG00000003676CPSF310099.382ENSMMUG00000018038CPSF310099.382Macaca_mulatta
ENSUMAG00000003676CPSF310088.099ENSMNEG00000039447CPSF39488.099Macaca_nemestrina
ENSUMAG00000003676CPSF310099.536ENSMLEG00000026825CPSF39599.536Mandrillus_leucophaeus
ENSUMAG00000003676CPSF39785.443ENSMAMG00000008835CPSF39985.443Mastacembelus_armatus
ENSUMAG00000003676CPSF39490.681ENSMAMG00000003076cpsf39586.762Mastacembelus_armatus
ENSUMAG00000003676CPSF39493.369ENSMZEG00005006258CPSF39986.508Maylandia_zebra
ENSUMAG00000003676CPSF39490.860ENSMZEG00005014358cpsf39983.439Maylandia_zebra
ENSUMAG00000003676CPSF310094.900ENSMGAG00000013995CPSF39794.900Meleagris_gallopavo
ENSUMAG00000003676CPSF35897.606ENSMAUG00000000166Cpsf310097.606Mesocricetus_auratus
ENSUMAG00000003676CPSF310093.818ENSMICG00000002363CPSF310093.594Microcebus_murinus
ENSUMAG00000003676CPSF310093.972ENSMOCG00000020067Cpsf38999.139Microtus_ochrogaster
ENSUMAG00000003676CPSF39487.993ENSMMOG00000018212CPSF39882.481Mola_mola
ENSUMAG00000003676CPSF37777.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSUMAG00000003676CPSF310096.024ENSMODG00000014703CPSF39596.024Monodelphis_domestica
ENSUMAG00000003676CPSF39491.398ENSMALG00000016416cpsf39983.439Monopterus_albus
ENSUMAG00000003676CPSF39290.580ENSMALG00000011474CPSF39983.438Monopterus_albus
ENSUMAG00000003676CPSF310098.764MGP_CAROLIEiJ_G0017640Cpsf39598.764Mus_caroli
ENSUMAG00000003676CPSF310098.764ENSMUSG00000054309Cpsf39598.764Mus_musculus
ENSUMAG00000003676CPSF310098.609MGP_PahariEiJ_G0029397Cpsf39598.609Mus_pahari
ENSUMAG00000003676CPSF310098.764MGP_SPRETEiJ_G0018481Cpsf39598.764Mus_spretus
ENSUMAG00000003676CPSF310099.227ENSMPUG00000013213CPSF39599.227Mustela_putorius_furo
ENSUMAG00000003676CPSF310098.611ENSMLUG00000010636CPSF39598.611Myotis_lucifugus
ENSUMAG00000003676CPSF310098.918ENSNGAG00000019836Cpsf39598.918Nannospalax_galili
ENSUMAG00000003676CPSF39786.508ENSNBRG00000010525CPSF39986.508Neolamprologus_brichardi
ENSUMAG00000003676CPSF39490.502ENSNBRG00000004770cpsf39982.962Neolamprologus_brichardi
ENSUMAG00000003676CPSF310099.382ENSNLEG00000013359CPSF310099.382Nomascus_leucogenys
ENSUMAG00000003676CPSF39966.718ENSMEUG00000013117-9466.718Notamacropus_eugenii
ENSUMAG00000003676CPSF310089.799ENSOPRG00000008902CPSF39589.799Ochotona_princeps
ENSUMAG00000003676CPSF310097.218ENSODEG00000003129CPSF39597.218Octodon_degus
ENSUMAG00000003676CPSF39490.860ENSONIG00000018812cpsf39385.581Oreochromis_niloticus
ENSUMAG00000003676CPSF38796.631ENSOANG00000008577CPSF310096.631Ornithorhynchus_anatinus
ENSUMAG00000003676CPSF310099.382ENSOCUG00000003728CPSF39599.382Oryctolagus_cuniculus
ENSUMAG00000003676CPSF39488.889ENSORLG00000018854cpsf39383.256Oryzias_latipes
ENSUMAG00000003676CPSF39488.889ENSORLG00020013331cpsf39980.286Oryzias_latipes_hni
ENSUMAG00000003676CPSF39488.889ENSORLG00015011017cpsf39980.604Oryzias_latipes_hsok
ENSUMAG00000003676CPSF39489.068ENSOMEG00000010647cpsf38983.411Oryzias_melastigma
ENSUMAG00000003676CPSF310088.872ENSOGAG00000001680CPSF39588.872Otolemur_garnettii
ENSUMAG00000003676CPSF310099.845ENSOARG00000015073CPSF39599.845Ovis_aries
ENSUMAG00000003676CPSF310099.536ENSPPAG00000042457CPSF39599.536Pan_paniscus
ENSUMAG00000003676CPSF310099.536ENSPPRG00000016790CPSF310099.536Panthera_pardus
ENSUMAG00000003676CPSF310099.536ENSPTIG00000003920CPSF310099.528Panthera_tigris_altaica
ENSUMAG00000003676CPSF310099.536ENSPTRG00000011638CPSF39599.536Pan_troglodytes
ENSUMAG00000003676CPSF310099.227ENSPANG00000016798CPSF39599.227Papio_anubis
ENSUMAG00000003676CPSF39989.457ENSPKIG00000023646cpsf39989.457Paramormyrops_kingsleyae
ENSUMAG00000003676CPSF310095.054ENSPSIG00000016144CPSF39595.054Pelodiscus_sinensis
ENSUMAG00000003676CPSF36379.506ENSPMGG00000015311CPSF39979.506Periophthalmus_magnuspinnatus
ENSUMAG00000003676CPSF39188.725ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSUMAG00000003676CPSF310098.454ENSPEMG00000017668Cpsf39598.454Peromyscus_maniculatus_bairdii
ENSUMAG00000003676CPSF38490.220ENSPMAG00000004841cpsf39290.220Petromyzon_marinus
ENSUMAG00000003676CPSF310097.682ENSPCIG00000009823CPSF39597.785Phascolarctos_cinereus
ENSUMAG00000003676CPSF39489.606ENSPFOG00000015922cpsf39384.520Poecilia_formosa
ENSUMAG00000003676CPSF39987.597ENSPFOG00000010418-9387.597Poecilia_formosa
ENSUMAG00000003676CPSF39489.606ENSPLAG00000000882cpsf39384.520Poecilia_latipinna
ENSUMAG00000003676CPSF36281.436ENSPLAG00000021300-9981.436Poecilia_latipinna
ENSUMAG00000003676CPSF39489.785ENSPMEG00000018309cpsf39384.675Poecilia_mexicana
ENSUMAG00000003676CPSF39982.171ENSPREG00000004482CPSF39382.171Poecilia_reticulata
ENSUMAG00000003676CPSF39882.233ENSPREG00000014875cpsf39982.233Poecilia_reticulata
ENSUMAG00000003676CPSF310094.745ENSPPYG00000012666CPSF39494.745Pongo_abelii
ENSUMAG00000003676CPSF39565.416ENSPCAG00000015042CPSF39465.416Procavia_capensis
ENSUMAG00000003676CPSF38791.020ENSPCOG00000023016CPSF39191.020Propithecus_coquereli
ENSUMAG00000003676CPSF39999.535ENSPVAG00000005324CPSF39499.535Pteropus_vampyrus
ENSUMAG00000003676CPSF39490.860ENSPNYG00000004405cpsf39983.439Pundamilia_nyererei
ENSUMAG00000003676CPSF39191.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSUMAG00000003676CPSF39690.193ENSPNAG00000023060cpsf39985.374Pygocentrus_nattereri
ENSUMAG00000003676CPSF39998.760ENSRNOG00000052418Cpsf39498.760Rattus_norvegicus
ENSUMAG00000003676CPSF310094.900ENSRBIG00000041615CPSF39994.900Rhinopithecus_bieti
ENSUMAG00000003676CPSF310099.536ENSRROG00000033792CPSF39599.536Rhinopithecus_roxellana
ENSUMAG00000003676CPSF39642.296YLR277CYSH18542.296Saccharomyces_cerevisiae
ENSUMAG00000003676CPSF310094.777ENSSBOG00000027263CPSF39494.777Saimiri_boliviensis_boliviensis
ENSUMAG00000003676CPSF310097.836ENSSHAG00000007024CPSF39597.836Sarcophilus_harrisii
ENSUMAG00000003676CPSF39989.612ENSSFOG00015002108cpsf39989.415Scleropages_formosus
ENSUMAG00000003676CPSF39492.665ENSSMAG00000020534CPSF39087.622Scophthalmus_maximus
ENSUMAG00000003676CPSF39985.581ENSSDUG00000002828cpsf39185.581Seriola_dumerili
ENSUMAG00000003676CPSF39987.926ENSSDUG00000018498CPSF39986.349Seriola_dumerili
ENSUMAG00000003676CPSF39985.581ENSSLDG00000008469cpsf38690.794Seriola_lalandi_dorsalis
ENSUMAG00000003676CPSF39987.926ENSSLDG00000005234CPSF39986.349Seriola_lalandi_dorsalis
ENSUMAG00000003676CPSF310080.526ENSSARG00000005186CPSF39580.526Sorex_araneus
ENSUMAG00000003676CPSF310092.627ENSSPUG00000015525CPSF39492.627Sphenodon_punctatus
ENSUMAG00000003676CPSF39492.652ENSSPAG00000002906CPSF39986.032Stegastes_partitus
ENSUMAG00000003676CPSF39490.502ENSSPAG00000018579cpsf39384.806Stegastes_partitus
ENSUMAG00000003676CPSF39999.845ENSSSCG00000020799CPSF39998.562Sus_scrofa
ENSUMAG00000003676CPSF310095.363ENSTGUG00000013016CPSF39595.363Taeniopygia_guttata
ENSUMAG00000003676CPSF39589.261ENSTRUG00000007030cpsf39284.806Takifugu_rubripes
ENSUMAG00000003676CPSF36273.219ENSTRUG00000013905CPSF39973.219Takifugu_rubripes
ENSUMAG00000003676CPSF38592.988ENSTBEG00000002707CPSF37992.988Tupaia_belangeri
ENSUMAG00000003676CPSF38799.462ENSTTRG00000000861CPSF38299.462Tursiops_truncatus
ENSUMAG00000003676CPSF39996.744ENSUAMG00000007535CPSF39396.744Ursus_americanus
ENSUMAG00000003676CPSF394100.000ENSVPAG00000008041CPSF39795.928Vicugna_pacos
ENSUMAG00000003676CPSF3100100.000ENSVVUG00000002194CPSF395100.000Vulpes_vulpes
ENSUMAG00000003676CPSF39989.457ENSXETG00000008263cpsf39389.457Xenopus_tropicalis
ENSUMAG00000003676CPSF35780.054ENSXCOG00000000957-8780.054Xiphophorus_couchianus
ENSUMAG00000003676CPSF39589.027ENSXCOG00000019695cpsf39384.830Xiphophorus_couchianus
ENSUMAG00000003676CPSF39987.907ENSXMAG00000027291CPSF39387.907Xiphophorus_maculatus
ENSUMAG00000003676CPSF39489.785ENSXMAG00000009784cpsf39984.520Xiphophorus_maculatus

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