EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000003802 (Gene tree)
Gene ID: 103667566
Gene Symbol: SF3B4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 4621 bases
Position: chrKK498619.1:3054743-3059363
Accession: 103667566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000004742	RRM_1	PF00076.22	3.5e-39	1	2
ENSUMAP00000004742	RRM_1	PF00076.22	3.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000005736	SF3B4-201	1551	XM_008695739	ENSUMAP00000004742	422 (aa)	XP_008693961	UPI0004E00D1D

Gene Model

Click here to download ENSUMAG00000003802's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000003802's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000003802	SF3B4	55	36.296	ENSUMAG00000025436	PABPC1L	81	36.170
ENSUMAG00000003802	SF3B4	59	40.984	ENSUMAG00000017554	PABPC1	55	40.984

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000003802	SF3B4	100	98.821	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSUMAG00000003802	SF3B4	57	96.667	ENSAPOG00000017647	sf3b4	60	96.667	Acanthochromis_polyacanthus
ENSUMAG00000003802	SF3B4	100	99.057	ENSAMEG00000010073	SF3B4	100	99.057	Ailuropoda_melanoleuca
ENSUMAG00000003802	SF3B4	57	96.667	ENSAOCG00000019801	sf3b4	60	96.667	Amphiprion_ocellaris
ENSUMAG00000003802	SF3B4	57	96.667	ENSAPEG00000010365	sf3b4	60	96.667	Amphiprion_percula
ENSUMAG00000003802	SF3B4	57	96.250	ENSATEG00000012844	sf3b4	60	96.250	Anabas_testudineus
ENSUMAG00000003802	SF3B4	62	96.198	ENSACAG00000010019	SF3B4	93	89.594	Anolis_carolinensis
ENSUMAG00000003802	SF3B4	100	98.821	ENSANAG00000031025	SF3B4	100	98.821	Aotus_nancymaae
ENSUMAG00000003802	SF3B4	57	95.833	ENSACLG00000014260	sf3b4	93	71.899	Astatotilapia_calliptera
ENSUMAG00000003802	SF3B4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
ENSUMAG00000003802	SF3B4	91	96.335	ENSBTAG00000012793	-	93	96.335	Bos_taurus
ENSUMAG00000003802	SF3B4	100	99.057	ENSBTAG00000012495	SF3B4	100	99.057	Bos_taurus
ENSUMAG00000003802	SF3B4	90	81.443	ENSCJAG00000042351	SF3B4	91	82.119	Callithrix_jacchus
ENSUMAG00000003802	SF3B4	100	98.585	ENSCAFG00000011617	SF3B4	100	98.585	Canis_familiaris
ENSUMAG00000003802	SF3B4	100	98.585	ENSCAFG00020019775	SF3B4	100	98.585	Canis_lupus_dingo
ENSUMAG00000003802	SF3B4	100	99.057	ENSCHIG00000025663	-	100	99.057	Capra_hircus
ENSUMAG00000003802	SF3B4	100	98.821	ENSTSYG00000009295	SF3B4	100	98.821	Carlito_syrichta
ENSUMAG00000003802	SF3B4	100	98.821	ENSCPOG00000008267	SF3B4	100	98.821	Cavia_porcellus
ENSUMAG00000003802	SF3B4	100	86.334	ENSCCAG00000021751	-	69	92.284	Cebus_capucinus
ENSUMAG00000003802	SF3B4	100	98.821	ENSCATG00000033114	SF3B4	100	98.821	Cercocebus_atys
ENSUMAG00000003802	SF3B4	100	98.821	ENSCLAG00000015851	SF3B4	100	98.821	Chinchilla_lanigera
ENSUMAG00000003802	SF3B4	100	98.821	ENSCSAG00000018129	SF3B4	100	98.821	Chlorocebus_sabaeus
ENSUMAG00000003802	SF3B4	99	83.491	ENSCPBG00000008041	SF3B4	93	90.380	Chrysemys_picta_bellii
ENSUMAG00000003802	SF3B4	51	90.654	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSUMAG00000003802	SF3B4	100	98.821	ENSCANG00000035579	SF3B4	100	98.821	Colobus_angolensis_palliatus
ENSUMAG00000003802	SF3B4	100	99.292	ENSCGRG00001003590	Sf3b4	100	99.292	Cricetulus_griseus_chok1gshd
ENSUMAG00000003802	SF3B4	100	99.292	ENSCGRG00000016914	Sf3b4	100	99.292	Cricetulus_griseus_crigri
ENSUMAG00000003802	SF3B4	57	96.250	ENSDARG00000018574	sf3b4	60	96.250	Danio_rerio
ENSUMAG00000003802	SF3B4	98	96.154	ENSDNOG00000048908	-	99	96.154	Dasypus_novemcinctus
ENSUMAG00000003802	SF3B4	97	80.145	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSUMAG00000003802	SF3B4	100	99.057	ENSDORG00000016366	Sf3b4	100	99.057	Dipodomys_ordii
ENSUMAG00000003802	SF3B4	77	92.284	ENSETEG00000008963	SF3B4	93	89.594	Echinops_telfairi
ENSUMAG00000003802	SF3B4	100	99.057	ENSEASG00005001477	SF3B4	100	99.057	Equus_asinus_asinus
ENSUMAG00000003802	SF3B4	100	99.057	ENSECAG00000024737	SF3B4	100	99.057	Equus_caballus
ENSUMAG00000003802	SF3B4	57	97.083	ENSELUG00000012876	sf3b4	60	97.083	Esox_lucius
ENSUMAG00000003802	SF3B4	100	99.057	ENSFCAG00000010106	SF3B4	100	99.057	Felis_catus
ENSUMAG00000003802	SF3B4	100	98.821	ENSFDAG00000009286	SF3B4	100	98.821	Fukomys_damarensis
ENSUMAG00000003802	SF3B4	99	86.998	ENSGALG00000013352	SF3B4	93	89.594	Gallus_gallus
ENSUMAG00000003802	SF3B4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSUMAG00000003802	SF3B4	50	100.000	ENSGACG00000003819	sf3b4	58	97.807	Gasterosteus_aculeatus
ENSUMAG00000003802	SF3B4	99	83.255	ENSGAGG00000025055	SF3B4	82	90.127	Gopherus_agassizii
ENSUMAG00000003802	SF3B4	100	98.821	ENSGGOG00000004761	SF3B4	100	98.821	Gorilla_gorilla
ENSUMAG00000003802	SF3B4	100	72.749	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSUMAG00000003802	SF3B4	57	95.833	ENSHBUG00000002028	sf3b4	93	71.899	Haplochromis_burtoni
ENSUMAG00000003802	SF3B4	100	98.821	ENSHGLG00000012360	SF3B4	100	98.821	Heterocephalus_glaber_female
ENSUMAG00000003802	SF3B4	100	98.113	ENSHGLG00100008533	SF3B4	100	98.113	Heterocephalus_glaber_male
ENSUMAG00000003802	SF3B4	50	99.531	ENSHCOG00000003014	sf3b4	57	96.491	Hippocampus_comes
ENSUMAG00000003802	SF3B4	57	96.667	ENSIPUG00000012242	Sf3b4	60	96.667	Ictalurus_punctatus
ENSUMAG00000003802	SF3B4	100	99.057	ENSSTOG00000000684	-	100	99.057	Ictidomys_tridecemlineatus
ENSUMAG00000003802	SF3B4	76	84.483	ENSJJAG00000022500	Sf3b4	95	84.483	Jaculus_jaculus
ENSUMAG00000003802	SF3B4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSUMAG00000003802	SF3B4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSUMAG00000003802	SF3B4	58	95.473	ENSLACG00000004436	SF3B4	67	95.473	Latimeria_chalumnae
ENSUMAG00000003802	SF3B4	58	95.885	ENSLOCG00000009048	sf3b4	93	78.788	Lepisosteus_oculatus
ENSUMAG00000003802	SF3B4	100	98.588	ENSLAFG00000008531	SF3B4	100	98.588	Loxodonta_africana
ENSUMAG00000003802	SF3B4	100	98.821	ENSMFAG00000042395	SF3B4	100	98.821	Macaca_fascicularis
ENSUMAG00000003802	SF3B4	92	71.465	ENSMFAG00000039067	-	57	80.841	Macaca_fascicularis
ENSUMAG00000003802	SF3B4	100	98.821	ENSMMUG00000007256	SF3B4	100	98.821	Macaca_mulatta
ENSUMAG00000003802	SF3B4	92	70.951	ENSMNEG00000031526	-	57	80.374	Macaca_nemestrina
ENSUMAG00000003802	SF3B4	100	98.821	ENSMNEG00000031839	SF3B4	100	98.821	Macaca_nemestrina
ENSUMAG00000003802	SF3B4	100	98.821	ENSMLEG00000038667	SF3B4	100	98.821	Mandrillus_leucophaeus
ENSUMAG00000003802	SF3B4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSUMAG00000003802	SF3B4	57	95.833	ENSMZEG00005026741	sf3b4	93	71.899	Maylandia_zebra
ENSUMAG00000003802	SF3B4	99	87.441	ENSMGAG00000000653	SF3B4	93	87.563	Meleagris_gallopavo
ENSUMAG00000003802	SF3B4	100	99.292	ENSMAUG00000015266	Sf3b4	100	99.292	Mesocricetus_auratus
ENSUMAG00000003802	SF3B4	100	99.057	ENSMICG00000044961	SF3B4	100	99.057	Microcebus_murinus
ENSUMAG00000003802	SF3B4	100	99.057	ENSMOCG00000013658	-	100	99.057	Microtus_ochrogaster
ENSUMAG00000003802	SF3B4	98	94.217	ENSMOCG00000014155	-	100	94.217	Microtus_ochrogaster
ENSUMAG00000003802	SF3B4	55	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSUMAG00000003802	SF3B4	100	98.349	ENSMODG00000018767	SF3B4	100	98.349	Monodelphis_domestica
ENSUMAG00000003802	SF3B4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSUMAG00000003802	SF3B4	100	99.057	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.057	Mus_caroli
ENSUMAG00000003802	SF3B4	100	99.292	ENSMUSG00000068856	Sf3b4	100	99.292	Mus_musculus
ENSUMAG00000003802	SF3B4	100	99.292	MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	Mus_pahari
ENSUMAG00000003802	SF3B4	100	99.292	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.292	Mus_spretus
ENSUMAG00000003802	SF3B4	100	99.057	ENSMPUG00000005563	SF3B4	100	99.057	Mustela_putorius_furo
ENSUMAG00000003802	SF3B4	100	98.821	ENSMLUG00000010789	SF3B4	100	98.821	Myotis_lucifugus
ENSUMAG00000003802	SF3B4	100	99.057	ENSNGAG00000016337	Sf3b4	100	99.057	Nannospalax_galili
ENSUMAG00000003802	SF3B4	57	96.250	ENSNBRG00000013865	sf3b4	93	72.152	Neolamprologus_brichardi
ENSUMAG00000003802	SF3B4	100	69.159	ENSNLEG00000009693	-	100	69.159	Nomascus_leucogenys
ENSUMAG00000003802	SF3B4	100	76.540	ENSNLEG00000000537	-	60	90.678	Nomascus_leucogenys
ENSUMAG00000003802	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSUMAG00000003802	SF3B4	99	96.912	ENSOPRG00000010808	SF3B4	99	96.912	Ochotona_princeps
ENSUMAG00000003802	SF3B4	75	86.435	ENSODEG00000003597	-	79	86.435	Octodon_degus
ENSUMAG00000003802	SF3B4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSUMAG00000003802	SF3B4	98	57.944	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSUMAG00000003802	SF3B4	100	99.057	ENSOCUG00000004614	SF3B4	100	99.057	Oryctolagus_cuniculus
ENSUMAG00000003802	SF3B4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSUMAG00000003802	SF3B4	55	96.983	ENSORLG00020000687	sf3b4	57	97.807	Oryzias_latipes_hni
ENSUMAG00000003802	SF3B4	55	96.983	ENSORLG00015010989	sf3b4	57	97.807	Oryzias_latipes_hsok
ENSUMAG00000003802	SF3B4	100	99.057	ENSOGAG00000006265	SF3B4	100	99.057	Otolemur_garnettii
ENSUMAG00000003802	SF3B4	100	99.057	ENSOARG00000020718	-	100	99.057	Ovis_aries
ENSUMAG00000003802	SF3B4	86	78.571	ENSOARG00000007368	-	55	83.482	Ovis_aries
ENSUMAG00000003802	SF3B4	100	81.043	ENSPPAG00000030024	-	58	89.831	Pan_paniscus
ENSUMAG00000003802	SF3B4	100	98.821	ENSPPAG00000040904	SF3B4	100	98.821	Pan_paniscus
ENSUMAG00000003802	SF3B4	100	99.057	ENSPPRG00000007384	SF3B4	100	99.057	Panthera_pardus
ENSUMAG00000003802	SF3B4	100	98.585	ENSPTIG00000014530	SF3B4	100	98.585	Panthera_tigris_altaica
ENSUMAG00000003802	SF3B4	100	98.821	ENSPTRG00000001243	SF3B4	100	98.821	Pan_troglodytes
ENSUMAG00000003802	SF3B4	100	79.147	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSUMAG00000003802	SF3B4	100	98.821	ENSPANG00000005126	SF3B4	100	98.821	Papio_anubis
ENSUMAG00000003802	SF3B4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
ENSUMAG00000003802	SF3B4	66	75.357	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
ENSUMAG00000003802	SF3B4	100	99.292	ENSPEMG00000017568	Sf3b4	100	99.292	Peromyscus_maniculatus_bairdii
ENSUMAG00000003802	SF3B4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSUMAG00000003802	SF3B4	100	98.349	ENSPCIG00000008765	SF3B4	100	98.349	Phascolarctos_cinereus
ENSUMAG00000003802	SF3B4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSUMAG00000003802	SF3B4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSUMAG00000003802	SF3B4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSUMAG00000003802	SF3B4	100	99.057	ENSPCOG00000015399	SF3B4	100	99.057	Propithecus_coquereli
ENSUMAG00000003802	SF3B4	100	99.057	ENSPVAG00000014171	SF3B4	100	99.057	Pteropus_vampyrus
ENSUMAG00000003802	SF3B4	57	95.833	ENSPNYG00000012700	sf3b4	93	71.899	Pundamilia_nyererei
ENSUMAG00000003802	SF3B4	57	96.667	ENSPNAG00000000686	sf3b4	61	96.667	Pygocentrus_nattereri
ENSUMAG00000003802	SF3B4	100	99.292	ENSRNOG00000021181	Sf3b4	100	99.292	Rattus_norvegicus
ENSUMAG00000003802	SF3B4	100	98.821	ENSRBIG00000043392	SF3B4	100	98.821	Rhinopithecus_bieti
ENSUMAG00000003802	SF3B4	91	70.725	ENSRROG00000028213	-	56	76.364	Rhinopithecus_roxellana
ENSUMAG00000003802	SF3B4	100	98.821	ENSRROG00000029366	SF3B4	100	98.821	Rhinopithecus_roxellana
ENSUMAG00000003802	SF3B4	100	98.585	ENSSBOG00000012310	-	100	98.585	Saimiri_boliviensis_boliviensis
ENSUMAG00000003802	SF3B4	100	95.755	ENSSHAG00000004043	SF3B4	100	97.900	Sarcophilus_harrisii
ENSUMAG00000003802	SF3B4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
ENSUMAG00000003802	SF3B4	57	96.667	ENSSMAG00000006837	sf3b4	60	96.667	Scophthalmus_maximus
ENSUMAG00000003802	SF3B4	57	97.083	ENSSDUG00000012064	sf3b4	60	97.083	Seriola_dumerili
ENSUMAG00000003802	SF3B4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
ENSUMAG00000003802	SF3B4	77	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSUMAG00000003802	SF3B4	57	97.500	ENSSPAG00000019219	sf3b4	60	97.500	Stegastes_partitus
ENSUMAG00000003802	SF3B4	86	65.746	ENSSSCG00000039440	-	58	87.097	Sus_scrofa
ENSUMAG00000003802	SF3B4	100	98.821	ENSSSCG00000006665	-	100	98.821	Sus_scrofa
ENSUMAG00000003802	SF3B4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSUMAG00000003802	SF3B4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSUMAG00000003802	SF3B4	55	96.957	ENSTNIG00000009156	sf3b4	58	97.368	Tetraodon_nigroviridis
ENSUMAG00000003802	SF3B4	100	99.057	ENSTTRG00000005217	SF3B4	100	99.057	Tursiops_truncatus
ENSUMAG00000003802	SF3B4	100	99.057	ENSUAMG00000022468	SF3B4	100	99.057	Ursus_americanus
ENSUMAG00000003802	SF3B4	97	99.029	ENSVPAG00000008152	SF3B4	100	99.029	Vicugna_pacos
ENSUMAG00000003802	SF3B4	99	91.866	ENSVVUG00000007732	-	100	91.866	Vulpes_vulpes
ENSUMAG00000003802	SF3B4	61	96.899	ENSVVUG00000022697	-	54	96.899	Vulpes_vulpes
ENSUMAG00000003802	SF3B4	55	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSUMAG00000003802	SF3B4	55	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus