EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000004012 (Gene tree)
Gene ID: 103677852
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 67502 bases
Position: chrKK498742.1:694435-761936
Accession: 103677852
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000005030	XRN_N	PF03159.18	2.6e-93	1	1
ENSUMAP00000005033	XRN_N	PF03159.18	2.8e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000006084	XRN2-201	3646	XM_008707096	ENSUMAP00000005030	976 (aa)	XP_008705318	UPI0004E002DA
ENSUMAT00000006089	XRN2-202	3538	-	ENSUMAP00000005033	940 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000004012's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03008	Ribosome biogenesis in eukaryotes	KEGG
umr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000004012's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000004012	XRN2	95	97.730	ENSG00000088930	XRN2	97	97.730	Homo_sapiens
ENSUMAG00000004012	XRN2	92	71.116	ENSAPOG00000009818	xrn2	97	69.843	Acanthochromis_polyacanthus
ENSUMAG00000004012	XRN2	95	99.459	ENSAMEG00000012581	XRN2	97	99.459	Ailuropoda_melanoleuca
ENSUMAG00000004012	XRN2	85	69.601	ENSACIG00000015047	xrn2	90	73.737	Amphilophus_citrinellus
ENSUMAG00000004012	XRN2	92	71.429	ENSAOCG00000023632	xrn2	97	70.177	Amphiprion_ocellaris
ENSUMAG00000004012	XRN2	92	71.257	ENSAPEG00000014871	xrn2	97	69.979	Amphiprion_percula
ENSUMAG00000004012	XRN2	90	71.014	ENSATEG00000001273	xrn2	95	70.326	Anabas_testudineus
ENSUMAG00000004012	XRN2	95	83.208	ENSAPLG00000013869	XRN2	99	83.638	Anas_platyrhynchos
ENSUMAG00000004012	XRN2	95	82.340	ENSACAG00000005565	XRN2	97	82.340	Anolis_carolinensis
ENSUMAG00000004012	XRN2	95	97.405	ENSANAG00000020126	XRN2	97	97.405	Aotus_nancymaae
ENSUMAG00000004012	XRN2	85	73.063	ENSACLG00000010522	xrn2	77	98.667	Astatotilapia_calliptera
ENSUMAG00000004012	XRN2	95	70.471	ENSAMXG00000018301	xrn2	97	70.471	Astyanax_mexicanus
ENSUMAG00000004012	XRN2	95	96.112	ENSBTAG00000011304	XRN2	100	95.987	Bos_taurus
ENSUMAG00000004012	XRN2	82	55.755	WBGene00006964	xrn-2	86	55.012	Caenorhabditis_elegans
ENSUMAG00000004012	XRN2	95	97.514	ENSCJAG00000005611	XRN2	97	97.514	Callithrix_jacchus
ENSUMAG00000004012	XRN2	95	99.135	ENSCAFG00000005185	XRN2	98	99.135	Canis_familiaris
ENSUMAG00000004012	XRN2	95	99.135	ENSCAFG00020027479	XRN2	97	99.135	Canis_lupus_dingo
ENSUMAG00000004012	XRN2	95	96.328	ENSCHIG00000006921	XRN2	97	96.328	Capra_hircus
ENSUMAG00000004012	XRN2	95	96.973	ENSTSYG00000008315	XRN2	97	96.973	Carlito_syrichta
ENSUMAG00000004012	XRN2	95	82.093	ENSCAPG00000010773	XRN2	99	82.093	Cavia_aperea
ENSUMAG00000004012	XRN2	95	97.297	ENSCPOG00000009407	XRN2	97	97.297	Cavia_porcellus
ENSUMAG00000004012	XRN2	95	98.054	ENSCATG00000040350	XRN2	97	98.054	Cercocebus_atys
ENSUMAG00000004012	XRN2	95	97.730	ENSCLAG00000013419	XRN2	97	97.730	Chinchilla_lanigera
ENSUMAG00000004012	XRN2	95	98.054	ENSCSAG00000011094	XRN2	97	98.054	Chlorocebus_sabaeus
ENSUMAG00000004012	XRN2	69	99.462	ENSCHOG00000013404	XRN2	70	99.462	Choloepus_hoffmanni
ENSUMAG00000004012	XRN2	95	84.278	ENSCPBG00000023533	XRN2	99	84.920	Chrysemys_picta_bellii
ENSUMAG00000004012	XRN2	81	59.852	ENSCING00000022336	-	97	60.222	Ciona_intestinalis
ENSUMAG00000004012	XRN2	82	58.744	ENSCSAVG00000011217	-	95	61.000	Ciona_savignyi
ENSUMAG00000004012	XRN2	95	98.054	ENSCANG00000040240	XRN2	97	98.054	Colobus_angolensis_palliatus
ENSUMAG00000004012	XRN2	93	96.128	ENSCGRG00001010676	Xrn2	97	96.128	Cricetulus_griseus_chok1gshd
ENSUMAG00000004012	XRN2	95	95.469	ENSCGRG00000006378	Xrn2	99	95.469	Cricetulus_griseus_crigri
ENSUMAG00000004012	XRN2	50	71.281	ENSCSEG00000005628	xrn2	95	71.281	Cynoglossus_semilaevis
ENSUMAG00000004012	XRN2	84	70.769	ENSCVAG00000018999	xrn2	93	76.152	Cyprinodon_variegatus
ENSUMAG00000004012	XRN2	95	69.198	ENSDARG00000101900	xrn2	92	77.465	Danio_rerio
ENSUMAG00000004012	XRN2	95	96.973	ENSDNOG00000001895	XRN2	97	96.973	Dasypus_novemcinctus
ENSUMAG00000004012	XRN2	95	94.919	ENSDORG00000005434	Xrn2	97	94.919	Dipodomys_ordii
ENSUMAG00000004012	XRN2	81	56.156	FBgn0031868	Rat1	86	55.623	Drosophila_melanogaster
ENSUMAG00000004012	XRN2	88	93.714	ENSETEG00000001740	XRN2	87	93.714	Echinops_telfairi
ENSUMAG00000004012	XRN2	80	72.102	ENSEBUG00000016136	xrn2	99	72.102	Eptatretus_burgeri
ENSUMAG00000004012	XRN2	95	97.838	ENSEASG00005002484	XRN2	97	97.838	Equus_asinus_asinus
ENSUMAG00000004012	XRN2	94	97.939	ENSECAG00000018988	XRN2	97	96.076	Equus_caballus
ENSUMAG00000004012	XRN2	76	84.868	ENSEEUG00000009265	XRN2	78	84.868	Erinaceus_europaeus
ENSUMAG00000004012	XRN2	95	70.000	ENSELUG00000000552	xrn2	97	70.421	Esox_lucius
ENSUMAG00000004012	XRN2	95	99.135	ENSFCAG00000007970	XRN2	97	99.135	Felis_catus
ENSUMAG00000004012	XRN2	95	82.435	ENSFALG00000004508	XRN2	97	82.866	Ficedula_albicollis
ENSUMAG00000004012	XRN2	95	97.297	ENSFDAG00000016311	XRN2	97	97.297	Fukomys_damarensis
ENSUMAG00000004012	XRN2	50	68.876	ENSFHEG00000013039	xrn2	75	88.158	Fundulus_heteroclitus
ENSUMAG00000004012	XRN2	81	72.773	ENSGMOG00000013436	xrn2	97	72.773	Gadus_morhua
ENSUMAG00000004012	XRN2	95	82.562	ENSGALG00000008372	XRN2	97	82.562	Gallus_gallus
ENSUMAG00000004012	XRN2	84	73.141	ENSGAFG00000014284	xrn2	95	73.141	Gambusia_affinis
ENSUMAG00000004012	XRN2	82	74.442	ENSGACG00000011870	xrn2	97	74.442	Gasterosteus_aculeatus
ENSUMAG00000004012	XRN2	95	84.171	ENSGAGG00000004884	XRN2	97	84.813	Gopherus_agassizii
ENSUMAG00000004012	XRN2	95	97.946	ENSGGOG00000013738	XRN2	97	97.946	Gorilla_gorilla
ENSUMAG00000004012	XRN2	50	73.737	ENSHBUG00000005077	xrn2	77	98.667	Haplochromis_burtoni
ENSUMAG00000004012	XRN2	95	96.324	ENSHGLG00000014831	XRN2	97	96.324	Heterocephalus_glaber_female
ENSUMAG00000004012	XRN2	95	96.324	ENSHGLG00100013130	XRN2	97	96.324	Heterocephalus_glaber_male
ENSUMAG00000004012	XRN2	95	67.739	ENSHCOG00000011994	xrn2	97	68.672	Hippocampus_comes
ENSUMAG00000004012	XRN2	95	69.110	ENSIPUG00000006639	xrn2	97	69.110	Ictalurus_punctatus
ENSUMAG00000004012	XRN2	95	98.054	ENSSTOG00000000589	XRN2	97	98.054	Ictidomys_tridecemlineatus
ENSUMAG00000004012	XRN2	95	96.432	ENSJJAG00000022128	Xrn2	97	96.432	Jaculus_jaculus
ENSUMAG00000004012	XRN2	50	79.218	ENSLBEG00000010041	xrn2	95	79.218	Labrus_bergylta
ENSUMAG00000004012	XRN2	91	77.419	ENSLACG00000008307	XRN2	98	80.221	Latimeria_chalumnae
ENSUMAG00000004012	XRN2	95	72.473	ENSLOCG00000016874	xrn2	93	76.662	Lepisosteus_oculatus
ENSUMAG00000004012	XRN2	95	96.865	ENSLAFG00000014624	XRN2	97	96.865	Loxodonta_africana
ENSUMAG00000004012	XRN2	95	98.054	ENSMFAG00000038122	XRN2	97	98.054	Macaca_fascicularis
ENSUMAG00000004012	XRN2	95	98.054	ENSMMUG00000011405	XRN2	97	98.054	Macaca_mulatta
ENSUMAG00000004012	XRN2	95	98.162	ENSMNEG00000040626	XRN2	97	98.162	Macaca_nemestrina
ENSUMAG00000004012	XRN2	95	97.946	ENSMLEG00000041897	XRN2	97	97.946	Mandrillus_leucophaeus
ENSUMAG00000004012	XRN2	90	72.340	ENSMAMG00000008633	xrn2	95	70.797	Mastacembelus_armatus
ENSUMAG00000004012	XRN2	85	75.089	ENSMZEG00005022362	xrn2	94	75.089	Maylandia_zebra
ENSUMAG00000004012	XRN2	95	81.243	ENSMGAG00000003196	XRN2	97	81.243	Meleagris_gallopavo
ENSUMAG00000004012	XRN2	95	96.324	ENSMAUG00000021842	Xrn2	97	96.324	Mesocricetus_auratus
ENSUMAG00000004012	XRN2	95	97.081	ENSMICG00000008126	XRN2	97	97.081	Microcebus_murinus
ENSUMAG00000004012	XRN2	95	95.892	ENSMOCG00000012588	Xrn2	97	95.892	Microtus_ochrogaster
ENSUMAG00000004012	XRN2	84	73.318	ENSMMOG00000017576	xrn2	93	73.318	Mola_mola
ENSUMAG00000004012	XRN2	95	90.486	ENSMODG00000006163	XRN2	97	90.486	Monodelphis_domestica
ENSUMAG00000004012	XRN2	86	71.991	ENSMALG00000011355	xrn2	97	71.991	Monopterus_albus
ENSUMAG00000004012	XRN2	95	95.248	MGP_CAROLIEiJ_G0024400	Xrn2	97	95.248	Mus_caroli
ENSUMAG00000004012	XRN2	95	95.464	ENSMUSG00000027433	Xrn2	97	95.464	Mus_musculus
ENSUMAG00000004012	XRN2	95	95.351	MGP_PahariEiJ_G0025843	Xrn2	97	95.351	Mus_pahari
ENSUMAG00000004012	XRN2	95	95.464	MGP_SPRETEiJ_G0025318	Xrn2	97	95.464	Mus_spretus
ENSUMAG00000004012	XRN2	95	97.665	ENSMPUG00000001198	XRN2	91	97.665	Mustela_putorius_furo
ENSUMAG00000004012	XRN2	95	97.297	ENSMLUG00000001536	XRN2	97	97.297	Myotis_lucifugus
ENSUMAG00000004012	XRN2	95	96.649	ENSNGAG00000018138	Xrn2	97	96.649	Nannospalax_galili
ENSUMAG00000004012	XRN2	85	75.298	ENSNBRG00000008062	xrn2	77	98.667	Neolamprologus_brichardi
ENSUMAG00000004012	XRN2	95	97.946	ENSNLEG00000009991	XRN2	97	97.946	Nomascus_leucogenys
ENSUMAG00000004012	XRN2	65	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
ENSUMAG00000004012	XRN2	76	79.058	ENSOPRG00000001397	-	77	79.058	Ochotona_princeps
ENSUMAG00000004012	XRN2	95	97.189	ENSODEG00000010745	-	97	97.189	Octodon_degus
ENSUMAG00000004012	XRN2	94	87.978	ENSODEG00000000860	-	98	88.415	Octodon_degus
ENSUMAG00000004012	XRN2	95	71.081	ENSONIG00000018720	xrn2	97	71.292	Oreochromis_niloticus
ENSUMAG00000004012	XRN2	95	90.939	ENSOANG00000015673	XRN2	97	90.939	Ornithorhynchus_anatinus
ENSUMAG00000004012	XRN2	95	98.054	ENSOCUG00000013468	XRN2	97	98.054	Oryctolagus_cuniculus
ENSUMAG00000004012	XRN2	93	69.691	ENSORLG00000017213	xrn2	94	74.405	Oryzias_latipes
ENSUMAG00000004012	XRN2	93	69.691	ENSORLG00020001824	xrn2	97	69.658	Oryzias_latipes_hni
ENSUMAG00000004012	XRN2	93	69.477	ENSORLG00015019747	xrn2	97	69.444	Oryzias_latipes_hsok
ENSUMAG00000004012	XRN2	85	73.540	ENSOMEG00000019820	xrn2	97	68.613	Oryzias_melastigma
ENSUMAG00000004012	XRN2	95	96.973	ENSOGAG00000001068	XRN2	97	96.973	Otolemur_garnettii
ENSUMAG00000004012	XRN2	95	96.328	ENSOARG00000004443	XRN2	100	96.328	Ovis_aries
ENSUMAG00000004012	XRN2	95	97.946	ENSPPAG00000033549	XRN2	97	97.946	Pan_paniscus
ENSUMAG00000004012	XRN2	95	99.135	ENSPPRG00000008732	XRN2	97	99.135	Panthera_pardus
ENSUMAG00000004012	XRN2	95	99.135	ENSPTIG00000015683	XRN2	97	99.135	Panthera_tigris_altaica
ENSUMAG00000004012	XRN2	95	97.946	ENSPTRG00000013308	XRN2	97	97.946	Pan_troglodytes
ENSUMAG00000004012	XRN2	95	98.054	ENSPANG00000018088	XRN2	97	98.054	Papio_anubis
ENSUMAG00000004012	XRN2	95	70.242	ENSPKIG00000016889	xrn2	97	70.242	Paramormyrops_kingsleyae
ENSUMAG00000004012	XRN2	78	87.630	ENSPSIG00000014666	XRN2	100	87.630	Pelodiscus_sinensis
ENSUMAG00000004012	XRN2	95	95.676	ENSPEMG00000000111	Xrn2	97	95.676	Peromyscus_maniculatus_bairdii
ENSUMAG00000004012	XRN2	95	69.157	ENSPFOG00000004182	xrn2	97	69.574	Poecilia_formosa
ENSUMAG00000004012	XRN2	84	73.501	ENSPLAG00000007351	xrn2	93	73.501	Poecilia_latipinna
ENSUMAG00000004012	XRN2	92	68.118	ENSPMEG00000011798	xrn2	99	68.988	Poecilia_mexicana
ENSUMAG00000004012	XRN2	84	73.381	ENSPREG00000012452	xrn2	96	71.792	Poecilia_reticulata
ENSUMAG00000004012	XRN2	95	97.514	ENSPPYG00000010755	XRN2	97	97.514	Pongo_abelii
ENSUMAG00000004012	XRN2	95	90.723	ENSPCAG00000011191	XRN2	97	90.831	Procavia_capensis
ENSUMAG00000004012	XRN2	95	90.270	ENSPCOG00000016468	XRN2	97	90.270	Propithecus_coquereli
ENSUMAG00000004012	XRN2	88	95.441	ENSPVAG00000004596	XRN2	90	95.441	Pteropus_vampyrus
ENSUMAG00000004012	XRN2	85	73.063	ENSPNYG00000001765	xrn2	94	73.063	Pundamilia_nyererei
ENSUMAG00000004012	XRN2	95	70.409	ENSPNAG00000010956	xrn2	97	70.409	Pygocentrus_nattereri
ENSUMAG00000004012	XRN2	95	96.220	ENSRNOG00000011785	Xrn2	97	96.220	Rattus_norvegicus
ENSUMAG00000004012	XRN2	81	98.235	ENSRBIG00000036193	XRN2	97	98.235	Rhinopithecus_bieti
ENSUMAG00000004012	XRN2	95	98.054	ENSRROG00000044400	XRN2	88	98.054	Rhinopithecus_roxellana
ENSUMAG00000004012	XRN2	62	54.318	YOR048C	RAT1	61	52.393	Saccharomyces_cerevisiae
ENSUMAG00000004012	XRN2	95	97.946	ENSSBOG00000021014	XRN2	97	97.946	Saimiri_boliviensis_boliviensis
ENSUMAG00000004012	XRN2	95	71.474	ENSSFOG00015001091	xrn2	97	71.474	Scleropages_formosus
ENSUMAG00000004012	XRN2	87	72.791	ENSSMAG00000007834	xrn2	97	68.366	Scophthalmus_maximus
ENSUMAG00000004012	XRN2	86	71.445	ENSSDUG00000012802	xrn2	96	71.795	Seriola_dumerili
ENSUMAG00000004012	XRN2	88	73.225	ENSSLDG00000021273	xrn2	97	73.225	Seriola_lalandi_dorsalis
ENSUMAG00000004012	XRN2	72	97.297	ENSSARG00000005859	-	74	97.297	Sorex_araneus
ENSUMAG00000004012	XRN2	93	79.626	ENSSPUG00000005485	XRN2	93	79.736	Sphenodon_punctatus
ENSUMAG00000004012	XRN2	95	69.926	ENSSPAG00000016027	xrn2	97	69.926	Stegastes_partitus
ENSUMAG00000004012	XRN2	95	96.108	ENSSSCG00000007109	XRN2	97	96.108	Sus_scrofa
ENSUMAG00000004012	XRN2	95	81.116	ENSTGUG00000007535	XRN2	97	81.545	Taeniopygia_guttata
ENSUMAG00000004012	XRN2	95	67.220	ENSTRUG00000015489	xrn2	97	67.601	Takifugu_rubripes
ENSUMAG00000004012	XRN2	95	70.544	ENSTNIG00000010712	xrn2	97	70.544	Tetraodon_nigroviridis
ENSUMAG00000004012	XRN2	95	97.189	ENSTBEG00000004119	XRN2	97	97.189	Tupaia_belangeri
ENSUMAG00000004012	XRN2	88	98.113	ENSTTRG00000009087	XRN2	90	98.113	Tursiops_truncatus
ENSUMAG00000004012	XRN2	95	99.784	ENSUAMG00000024634	XRN2	97	99.784	Ursus_americanus
ENSUMAG00000004012	XRN2	80	97.407	ENSVPAG00000010694	XRN2	91	90.059	Vicugna_pacos
ENSUMAG00000004012	XRN2	95	99.243	ENSVVUG00000012178	XRN2	97	99.243	Vulpes_vulpes
ENSUMAG00000004012	XRN2	95	74.225	ENSXETG00000023501	xrn2	97	74.866	Xenopus_tropicalis
ENSUMAG00000004012	XRN2	95	67.687	ENSXMAG00000000242	xrn2	97	68.532	Xiphophorus_maculatus