EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000004073 (Gene tree)
Gene ID: 103667618
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 67531 bases
Position: chrKK498621.1:162935-230465
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000005716	ResIII	PF04851.15	1e-12	1	1
ENSUMAP00000005667	ResIII	PF04851.15	1.2e-12	1	1
ENSUMAP00000005321	ResIII	PF04851.15	1.7e-12	1	1
ENSUMAP00000005603	ResIII	PF04851.15	1.8e-12	1	1
ENSUMAP00000005598	ResIII	PF04851.15	3.5e-11	1	1
ENSUMAP00000005466	ResIII	PF04851.15	3.1e-10	1	1
ENSUMAP00000005716	DEAD	PF00270.29	1e-06	1	1
ENSUMAP00000005603	DEAD	PF00270.29	1.3e-06	1	1
ENSUMAP00000005321	DEAD	PF00270.29	1.3e-06	1	1
ENSUMAP00000005598	DEAD	PF00270.29	1.4e-06	1	1
ENSUMAP00000005667	DEAD	PF00270.29	1.4e-06	1	1
ENSUMAP00000005466	DEAD	PF00270.29	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000006594	SMARCA1-202	2844	-	ENSUMAP00000005466	947 (aa)	-	-
ENSUMAT00000006746	SMARCA1-204	2967	-	ENSUMAP00000005603	988 (aa)	-	-
ENSUMAT00000006741	SMARCA1-203	2772	-	ENSUMAP00000005598	923 (aa)	-	-
ENSUMAT00000006887	SMARCA1-206	1278	-	ENSUMAP00000005716	425 (aa)	-	-
ENSUMAT00000006428	SMARCA1-201	2991	-	ENSUMAP00000005321	996 (aa)	-	-
ENSUMAT00000006822	SMARCA1-205	3048	-	ENSUMAP00000005667	1015 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000004073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000004073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000004073	SMARCA1	73	40.498	ENSUMAG00000002017	CHD6	71	40.816
ENSUMAG00000004073	SMARCA1	67	31.410	ENSUMAG00000016401	-	55	34.638
ENSUMAG00000004073	SMARCA1	96	86.308	ENSUMAG00000015324	SMARCA5	95	81.549
ENSUMAG00000004073	SMARCA1	67	41.356	ENSUMAG00000004549	SMARCAD1	50	38.953
ENSUMAG00000004073	SMARCA1	75	44.099	ENSUMAG00000009733	CHD1L	88	42.090
ENSUMAG00000004073	SMARCA1	76	38.131	ENSUMAG00000004748	HELLS	77	49.004

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000004073	SMARCA1	97	98.783	ENSG00000102038	SMARCA1	95	94.071	Homo_sapiens
ENSUMAG00000004073	SMARCA1	95	85.360	ENSAPOG00000016035	smarca5	98	80.197	Acanthochromis_polyacanthus
ENSUMAG00000004073	SMARCA1	97	100.000	ENSAMEG00000015218	SMARCA1	95	94.466	Ailuropoda_melanoleuca
ENSUMAG00000004073	SMARCA1	92	80.046	ENSACIG00000016982	smarca5	99	80.469	Amphilophus_citrinellus
ENSUMAG00000004073	SMARCA1	95	85.360	ENSAOCG00000015578	smarca5	97	77.932	Amphiprion_ocellaris
ENSUMAG00000004073	SMARCA1	95	85.360	ENSAPEG00000011117	smarca5	99	79.953	Amphiprion_percula
ENSUMAG00000004073	SMARCA1	98	83.693	ENSATEG00000012894	smarca5	96	78.278	Anabas_testudineus
ENSUMAG00000004073	SMARCA1	96	92.910	ENSAPLG00000013149	SMARCA1	100	87.726	Anas_platyrhynchos
ENSUMAG00000004073	SMARCA1	99	91.647	ENSACAG00000011376	SMARCA1	95	85.771	Anolis_carolinensis
ENSUMAG00000004073	SMARCA1	97	94.891	ENSANAG00000023098	SMARCA1	94	89.219	Aotus_nancymaae
ENSUMAG00000004073	SMARCA1	96	84.841	ENSACLG00000025356	smarca5	95	79.133	Astatotilapia_calliptera
ENSUMAG00000004073	SMARCA1	97	84.428	ENSAMXG00000005709	smarca5	95	79.331	Astyanax_mexicanus
ENSUMAG00000004073	SMARCA1	92	84.086	ENSAMXG00000011227	smarca1	99	85.212	Astyanax_mexicanus
ENSUMAG00000004073	SMARCA1	97	98.540	ENSBTAG00000002292	SMARCA1	94	94.320	Bos_taurus
ENSUMAG00000004073	SMARCA1	96	62.439	WBGene00002169	isw-1	97	59.880	Caenorhabditis_elegans
ENSUMAG00000004073	SMARCA1	97	98.783	ENSCJAG00000002868	SMARCA1	95	93.874	Callithrix_jacchus
ENSUMAG00000004073	SMARCA1	96	88.998	ENSCAFG00000018673	SMARCA1	99	83.765	Canis_familiaris
ENSUMAG00000004073	SMARCA1	97	99.757	ENSCAFG00020001751	SMARCA1	95	93.874	Canis_lupus_dingo
ENSUMAG00000004073	SMARCA1	97	98.783	ENSCHIG00000009837	SMARCA1	93	94.422	Capra_hircus
ENSUMAG00000004073	SMARCA1	96	98.293	ENSTSYG00000004240	SMARCA1	99	93.428	Carlito_syrichta
ENSUMAG00000004073	SMARCA1	97	97.324	ENSCPOG00000013601	SMARCA1	94	92.901	Cavia_porcellus
ENSUMAG00000004073	SMARCA1	99	90.702	ENSCCAG00000030817	SMARCA1	94	90.711	Cebus_capucinus
ENSUMAG00000004073	SMARCA1	97	98.783	ENSCATG00000015921	SMARCA1	95	94.071	Cercocebus_atys
ENSUMAG00000004073	SMARCA1	97	97.080	ENSCLAG00000002171	SMARCA1	94	92.901	Chinchilla_lanigera
ENSUMAG00000004073	SMARCA1	97	98.783	ENSCSAG00000008460	SMARCA1	95	92.885	Chlorocebus_sabaeus
ENSUMAG00000004073	SMARCA1	98	92.105	ENSCPBG00000001146	SMARCA1	95	87.167	Chrysemys_picta_bellii
ENSUMAG00000004073	SMARCA1	97	73.366	ENSCING00000004110	swi/snf	98	68.993	Ciona_intestinalis
ENSUMAG00000004073	SMARCA1	97	72.881	ENSCSAVG00000004620	-	100	70.267	Ciona_savignyi
ENSUMAG00000004073	SMARCA1	97	98.540	ENSCANG00000007183	SMARCA1	95	93.972	Colobus_angolensis_palliatus
ENSUMAG00000004073	SMARCA1	99	95.943	ENSCGRG00001010776	Smarca1	95	90.020	Cricetulus_griseus_chok1gshd
ENSUMAG00000004073	SMARCA1	99	95.465	ENSCGRG00000015301	Smarca1	99	91.313	Cricetulus_griseus_crigri
ENSUMAG00000004073	SMARCA1	95	85.608	ENSCSEG00000000328	smarca5	96	78.131	Cynoglossus_semilaevis
ENSUMAG00000004073	SMARCA1	96	84.597	ENSCVAG00000008668	smarca5	99	79.623	Cyprinodon_variegatus
ENSUMAG00000004073	SMARCA1	97	86.715	ENSDARG00000012776	smarca1	96	81.754	Danio_rerio
ENSUMAG00000004073	SMARCA1	95	84.367	ENSDARG00000052348	smarca5	96	78.593	Danio_rerio
ENSUMAG00000004073	SMARCA1	97	97.567	ENSDNOG00000004315	SMARCA1	94	92.245	Dasypus_novemcinctus
ENSUMAG00000004073	SMARCA1	97	96.837	ENSDORG00000009270	Smarca1	97	89.391	Dipodomys_ordii
ENSUMAG00000004073	SMARCA1	97	72.263	FBgn0011604	Iswi	98	67.868	Drosophila_melanogaster
ENSUMAG00000004073	SMARCA1	86	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSUMAG00000004073	SMARCA1	96	82.020	ENSEBUG00000001239	smarca5	99	75.025	Eptatretus_burgeri
ENSUMAG00000004073	SMARCA1	97	97.080	ENSEASG00005008218	SMARCA1	100	88.611	Equus_asinus_asinus
ENSUMAG00000004073	SMARCA1	97	99.027	ENSECAG00000012106	SMARCA1	94	93.676	Equus_caballus
ENSUMAG00000004073	SMARCA1	79	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSUMAG00000004073	SMARCA1	98	86.364	ENSELUG00000010515	smarca1	96	83.003	Esox_lucius
ENSUMAG00000004073	SMARCA1	97	99.513	ENSFCAG00000018496	SMARCA1	95	94.592	Felis_catus
ENSUMAG00000004073	SMARCA1	94	92.732	ENSFALG00000000209	SMARCA1	98	88.901	Ficedula_albicollis
ENSUMAG00000004073	SMARCA1	97	97.810	ENSFDAG00000009818	SMARCA1	97	93.509	Fukomys_damarensis
ENSUMAG00000004073	SMARCA1	96	85.575	ENSFHEG00000007687	smarca5	96	77.668	Fundulus_heteroclitus
ENSUMAG00000004073	SMARCA1	96	93.171	ENSGALG00000008431	SMARCA1	97	87.971	Gallus_gallus
ENSUMAG00000004073	SMARCA1	96	85.086	ENSGAFG00000017731	smarca5	97	77.668	Gambusia_affinis
ENSUMAG00000004073	SMARCA1	96	92.138	ENSGAGG00000023575	SMARCA1	99	89.083	Gopherus_agassizii
ENSUMAG00000004073	SMARCA1	97	98.783	ENSGGOG00000012841	-	95	91.421	Gorilla_gorilla
ENSUMAG00000004073	SMARCA1	97	96.594	ENSHGLG00000003080	SMARCA1	94	92.394	Heterocephalus_glaber_female
ENSUMAG00000004073	SMARCA1	97	96.594	ENSHGLG00100001102	SMARCA1	100	90.622	Heterocephalus_glaber_male
ENSUMAG00000004073	SMARCA1	95	85.185	ENSHCOG00000005458	smarca5	97	77.988	Hippocampus_comes
ENSUMAG00000004073	SMARCA1	98	86.364	ENSIPUG00000016905	Smarca1	99	82.698	Ictalurus_punctatus
ENSUMAG00000004073	SMARCA1	97	83.942	ENSIPUG00000005229	SMARCA5	97	79.184	Ictalurus_punctatus
ENSUMAG00000004073	SMARCA1	97	99.027	ENSSTOG00000014524	SMARCA1	97	91.309	Ictidomys_tridecemlineatus
ENSUMAG00000004073	SMARCA1	99	96.420	ENSJJAG00000002593	Smarca1	95	91.616	Jaculus_jaculus
ENSUMAG00000004073	SMARCA1	95	85.926	ENSKMAG00000003777	smarca5	97	78.685	Kryptolebias_marmoratus
ENSUMAG00000004073	SMARCA1	98	83.693	ENSLBEG00000018112	smarca5	97	77.349	Labrus_bergylta
ENSUMAG00000004073	SMARCA1	98	83.693	ENSLBEG00000013295	SMARCA1	100	80.531	Labrus_bergylta
ENSUMAG00000004073	SMARCA1	98	89.952	ENSLACG00000016697	SMARCA1	99	84.418	Latimeria_chalumnae
ENSUMAG00000004073	SMARCA1	96	89.756	ENSLOCG00000014591	smarca1	98	83.054	Lepisosteus_oculatus
ENSUMAG00000004073	SMARCA1	97	96.394	ENSLAFG00000000896	SMARCA1	100	91.726	Loxodonta_africana
ENSUMAG00000004073	SMARCA1	97	98.783	ENSMFAG00000002117	SMARCA1	98	93.737	Macaca_fascicularis
ENSUMAG00000004073	SMARCA1	97	98.783	ENSMMUG00000008818	SMARCA1	99	93.796	Macaca_mulatta
ENSUMAG00000004073	SMARCA1	97	98.783	ENSMNEG00000041768	SMARCA1	98	93.737	Macaca_nemestrina
ENSUMAG00000004073	SMARCA1	97	98.783	ENSMLEG00000043198	SMARCA1	95	93.972	Mandrillus_leucophaeus
ENSUMAG00000004073	SMARCA1	96	84.841	ENSMAMG00000014294	smarca5	95	79.032	Mastacembelus_armatus
ENSUMAG00000004073	SMARCA1	96	84.841	ENSMZEG00005009369	smarca5	95	79.133	Maylandia_zebra
ENSUMAG00000004073	SMARCA1	96	93.171	ENSMGAG00000007042	SMARCA1	99	86.871	Meleagris_gallopavo
ENSUMAG00000004073	SMARCA1	99	96.659	ENSMAUG00000008133	Smarca1	98	89.137	Mesocricetus_auratus
ENSUMAG00000004073	SMARCA1	97	98.783	ENSMICG00000015768	SMARCA1	95	93.707	Microcebus_murinus
ENSUMAG00000004073	SMARCA1	99	95.943	ENSMOCG00000009464	Smarca1	94	92.292	Microtus_ochrogaster
ENSUMAG00000004073	SMARCA1	98	83.213	ENSMMOG00000005547	smarca5	99	78.883	Mola_mola
ENSUMAG00000004073	SMARCA1	98	90.431	ENSMODG00000013187	-	96	85.968	Monodelphis_domestica
ENSUMAG00000004073	SMARCA1	97	84.019	ENSMALG00000002081	smarca5	98	77.677	Monopterus_albus
ENSUMAG00000004073	SMARCA1	99	96.659	MGP_CAROLIEiJ_G0033034	Smarca1	99	89.158	Mus_caroli
ENSUMAG00000004073	SMARCA1	99	96.897	ENSMUSG00000031099	Smarca1	93	95.251	Mus_musculus
ENSUMAG00000004073	SMARCA1	99	96.897	MGP_PahariEiJ_G0031579	Smarca1	93	95.112	Mus_pahari
ENSUMAG00000004073	SMARCA1	99	96.897	MGP_SPRETEiJ_G0034192	Smarca1	99	89.255	Mus_spretus
ENSUMAG00000004073	SMARCA1	97	99.513	ENSMPUG00000017423	SMARCA1	89	94.960	Mustela_putorius_furo
ENSUMAG00000004073	SMARCA1	97	98.054	ENSMLUG00000029614	SMARCA1	95	91.026	Myotis_lucifugus
ENSUMAG00000004073	SMARCA1	99	97.375	ENSNGAG00000006492	Smarca1	95	92.836	Nannospalax_galili
ENSUMAG00000004073	SMARCA1	96	84.841	ENSNBRG00000004463	smarca5	99	79.234	Neolamprologus_brichardi
ENSUMAG00000004073	SMARCA1	97	97.080	ENSNLEG00000015179	SMARCA1	99	92.641	Nomascus_leucogenys
ENSUMAG00000004073	SMARCA1	98	90.909	ENSMEUG00000008819	SMARCA1	88	90.789	Notamacropus_eugenii
ENSUMAG00000004073	SMARCA1	97	97.080	ENSODEG00000012163	SMARCA1	94	92.129	Octodon_degus
ENSUMAG00000004073	SMARCA1	96	84.841	ENSONIG00000009993	smarca5	95	79.234	Oreochromis_niloticus
ENSUMAG00000004073	SMARCA1	96	92.383	ENSOANG00000002862	SMARCA1	99	89.186	Ornithorhynchus_anatinus
ENSUMAG00000004073	SMARCA1	97	97.567	ENSOCUG00000001047	SMARCA1	95	91.502	Oryctolagus_cuniculus
ENSUMAG00000004073	SMARCA1	95	85.185	ENSORLG00000021998	smarca5	97	77.438	Oryzias_latipes
ENSUMAG00000004073	SMARCA1	95	85.185	ENSORLG00020017679	smarca5	97	77.438	Oryzias_latipes_hni
ENSUMAG00000004073	SMARCA1	95	85.185	ENSORLG00015017210	smarca5	98	77.438	Oryzias_latipes_hsok
ENSUMAG00000004073	SMARCA1	95	85.185	ENSOMEG00000000086	smarca5	98	77.438	Oryzias_melastigma
ENSUMAG00000004073	SMARCA1	97	98.783	ENSOGAG00000004399	SMARCA1	94	94.016	Otolemur_garnettii
ENSUMAG00000004073	SMARCA1	97	98.783	ENSOARG00000014638	SMARCA1	100	93.347	Ovis_aries
ENSUMAG00000004073	SMARCA1	97	98.783	ENSPPAG00000034647	SMARCA1	95	94.071	Pan_paniscus
ENSUMAG00000004073	SMARCA1	97	99.757	ENSPPRG00000008929	SMARCA1	95	94.789	Panthera_pardus
ENSUMAG00000004073	SMARCA1	97	99.757	ENSPTIG00000000915	SMARCA1	98	93.222	Panthera_tigris_altaica
ENSUMAG00000004073	SMARCA1	97	98.783	ENSPTRG00000049876	SMARCA1	95	94.071	Pan_troglodytes
ENSUMAG00000004073	SMARCA1	97	98.783	ENSPANG00000003871	SMARCA1	95	94.071	Papio_anubis
ENSUMAG00000004073	SMARCA1	97	82.725	ENSPKIG00000013411	smarca1	98	81.865	Paramormyrops_kingsleyae
ENSUMAG00000004073	SMARCA1	98	92.105	ENSPSIG00000010101	SMARCA1	99	88.774	Pelodiscus_sinensis
ENSUMAG00000004073	SMARCA1	99	97.136	ENSPEMG00000017503	Smarca1	98	89.719	Peromyscus_maniculatus_bairdii
ENSUMAG00000004073	SMARCA1	98	91.148	ENSPCIG00000015460	SMARCA1	97	87.845	Phascolarctos_cinereus
ENSUMAG00000004073	SMARCA1	95	85.679	ENSPFOG00000007649	smarca5	97	77.767	Poecilia_formosa
ENSUMAG00000004073	SMARCA1	95	85.679	ENSPLAG00000003363	smarca5	97	77.767	Poecilia_latipinna
ENSUMAG00000004073	SMARCA1	95	85.432	ENSPMEG00000019849	smarca5	97	77.668	Poecilia_mexicana
ENSUMAG00000004073	SMARCA1	95	85.432	ENSPREG00000023250	smarca5	97	77.668	Poecilia_reticulata
ENSUMAG00000004073	SMARCA1	99	90.109	ENSPPYG00000020703	SMARCA1	95	90.119	Pongo_abelii
ENSUMAG00000004073	SMARCA1	94	91.250	ENSPCOG00000020722	SMARCA1	94	93.058	Propithecus_coquereli
ENSUMAG00000004073	SMARCA1	91	93.421	ENSPVAG00000003805	SMARCA1	88	93.421	Pteropus_vampyrus
ENSUMAG00000004073	SMARCA1	86	84.384	ENSPNYG00000012299	smarca5	92	83.200	Pundamilia_nyererei
ENSUMAG00000004073	SMARCA1	99	96.897	ENSRNOG00000003762	Smarca1	95	90.954	Rattus_norvegicus
ENSUMAG00000004073	SMARCA1	97	98.540	ENSRROG00000034167	SMARCA1	95	93.972	Rhinopithecus_roxellana
ENSUMAG00000004073	SMARCA1	97	98.540	ENSSBOG00000020641	SMARCA1	100	93.044	Saimiri_boliviensis_boliviensis
ENSUMAG00000004073	SMARCA1	97	81.421	ENSSHAG00000013518	SMARCA1	99	82.407	Sarcophilus_harrisii
ENSUMAG00000004073	SMARCA1	97	83.212	ENSSFOG00015016794	smarca5	98	80.781	Scleropages_formosus
ENSUMAG00000004073	SMARCA1	96	88.509	ENSSFOG00015009043	smarca1	98	81.988	Scleropages_formosus
ENSUMAG00000004073	SMARCA1	99	83.055	ENSSMAG00000004801	smarca5	97	77.106	Scophthalmus_maximus
ENSUMAG00000004073	SMARCA1	98	83.933	ENSSDUG00000020690	smarca5	97	77.634	Seriola_dumerili
ENSUMAG00000004073	SMARCA1	98	83.933	ENSSLDG00000025190	smarca5	97	77.634	Seriola_lalandi_dorsalis
ENSUMAG00000004073	SMARCA1	83	97.490	ENSSARG00000000842	SMARCA1	87	97.163	Sorex_araneus
ENSUMAG00000004073	SMARCA1	97	92.214	ENSSPUG00000000590	SMARCA1	95	87.080	Sphenodon_punctatus
ENSUMAG00000004073	SMARCA1	96	84.597	ENSSPAG00000002894	smarca5	97	80.306	Stegastes_partitus
ENSUMAG00000004073	SMARCA1	97	99.270	ENSSSCG00000012649	SMARCA1	97	91.412	Sus_scrofa
ENSUMAG00000004073	SMARCA1	96	92.665	ENSTGUG00000003899	-	100	87.223	Taeniopygia_guttata
ENSUMAG00000004073	SMARCA1	96	85.330	ENSTRUG00000014094	smarca5	96	78.378	Takifugu_rubripes
ENSUMAG00000004073	SMARCA1	95	82.878	ENSTNIG00000017717	smarca5	95	77.522	Tetraodon_nigroviridis
ENSUMAG00000004073	SMARCA1	97	86.714	ENSTBEG00000014973	SMARCA1	99	86.714	Tupaia_belangeri
ENSUMAG00000004073	SMARCA1	96	95.086	ENSTTRG00000006168	SMARCA1	99	91.327	Tursiops_truncatus
ENSUMAG00000004073	SMARCA1	97	100.000	ENSUAMG00000020201	SMARCA1	95	94.466	Ursus_americanus
ENSUMAG00000004073	SMARCA1	94	99.246	ENSVPAG00000010492	-	81	99.274	Vicugna_pacos
ENSUMAG00000004073	SMARCA1	97	99.513	ENSVVUG00000008878	SMARCA1	99	94.781	Vulpes_vulpes
ENSUMAG00000004073	SMARCA1	96	90.732	ENSXETG00000001526	smarca1	98	85.729	Xenopus_tropicalis
ENSUMAG00000004073	SMARCA1	96	85.086	ENSXCOG00000011170	smarca5	99	78.187	Xiphophorus_couchianus
ENSUMAG00000004073	SMARCA1	96	85.086	ENSXMAG00000009678	smarca5	98	80.916	Xiphophorus_maculatus