EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000004527 (Gene tree)
Gene ID: 103668616
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 150551 bases
Position: chrKK498627.1:13938111-14088661
Accession: 103668616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000005739	R3H	PF01424.22	4.8e-05	1	1
ENSUMAP00000005739	RNA_bind	PF08675.11	2.7e-33	1	1
ENSUMAP00000005739	CAF1	PF04857.20	2.2e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000006915	PARN-201	1987	XM_008696916	ENSUMAP00000005739	638 (aa)	XP_008695138	UPI0004E02375

Gene Model

Click here to download ENSUMAG00000004527's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000004527's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000004527	PARN	100	93.271	ENSG00000140694	PARN	100	98.305	Homo_sapiens
ENSUMAG00000004527	PARN	100	98.905	ENSAMEG00000011208	PARN	100	98.905	Ailuropoda_melanoleuca
ENSUMAG00000004527	PARN	83	75.933	ENSACIG00000000619	parn	83	75.933	Amphilophus_citrinellus
ENSUMAG00000004527	PARN	83	78.464	ENSAOCG00000003465	parn	78	78.464	Amphiprion_ocellaris
ENSUMAG00000004527	PARN	74	78.436	ENSAPEG00000010661	parn	91	78.436	Amphiprion_percula
ENSUMAG00000004527	PARN	83	79.291	ENSATEG00000004661	parn	78	79.291	Anabas_testudineus
ENSUMAG00000004527	PARN	99	83.412	ENSAPLG00000013914	PARN	99	83.412	Anas_platyrhynchos
ENSUMAG00000004527	PARN	100	77.846	ENSACAG00000004973	PARN	100	78.714	Anolis_carolinensis
ENSUMAG00000004527	PARN	100	92.019	ENSANAG00000031516	PARN	100	98.305	Aotus_nancymaae
ENSUMAG00000004527	PARN	89	75.130	ENSACLG00000004742	parn	82	75.130	Astatotilapia_calliptera
ENSUMAG00000004527	PARN	90	73.391	ENSAMXG00000012390	parn	92	71.826	Astyanax_mexicanus
ENSUMAG00000004527	PARN	100	91.850	ENSBTAG00000018097	PARN	100	94.281	Bos_taurus
ENSUMAG00000004527	PARN	100	92.488	ENSCJAG00000015866	PARN	100	98.305	Callithrix_jacchus
ENSUMAG00000004527	PARN	100	97.022	ENSCAFG00000018795	PARN	100	97.022	Canis_familiaris
ENSUMAG00000004527	PARN	100	97.022	ENSCAFG00020024126	PARN	100	97.022	Canis_lupus_dingo
ENSUMAG00000004527	PARN	100	94.984	ENSCHIG00000018143	PARN	100	94.984	Capra_hircus
ENSUMAG00000004527	PARN	73	62.578	ENSCAPG00000007984	PARN	78	62.578	Cavia_aperea
ENSUMAG00000004527	PARN	100	89.185	ENSCPOG00000002263	PARN	100	89.185	Cavia_porcellus
ENSUMAG00000004527	PARN	100	92.801	ENSCCAG00000030367	PARN	100	98.305	Cebus_capucinus
ENSUMAG00000004527	PARN	90	97.160	ENSCATG00000041368	PARN	100	98.305	Cercocebus_atys
ENSUMAG00000004527	PARN	100	89.969	ENSCLAG00000015406	PARN	99	89.969	Chinchilla_lanigera
ENSUMAG00000004527	PARN	100	93.427	ENSCSAG00000008142	PARN	100	93.427	Chlorocebus_sabaeus
ENSUMAG00000004527	PARN	99	76.228	ENSCHOG00000007014	PARN	100	76.228	Choloepus_hoffmanni
ENSUMAG00000004527	PARN	88	84.752	ENSCPBG00000006609	PARN	97	84.815	Chrysemys_picta_bellii
ENSUMAG00000004527	PARN	80	43.715	ENSCING00000010142	-	99	43.715	Ciona_intestinalis
ENSUMAG00000004527	PARN	100	80.851	ENSCANG00000028849	-	100	98.305	Colobus_angolensis_palliatus
ENSUMAG00000004527	PARN	100	85.335	ENSCGRG00001012096	Parn	100	85.335	Cricetulus_griseus_chok1gshd
ENSUMAG00000004527	PARN	100	85.335	ENSCGRG00000004939	Parn	100	85.335	Cricetulus_griseus_crigri
ENSUMAG00000004527	PARN	100	62.931	ENSCSEG00000002064	parn	100	63.801	Cynoglossus_semilaevis
ENSUMAG00000004527	PARN	83	77.985	ENSCVAG00000014848	parn	79	77.985	Cyprinodon_variegatus
ENSUMAG00000004527	PARN	98	66.667	ENSDARG00000102634	parn	100	58.333	Danio_rerio
ENSUMAG00000004527	PARN	100	92.947	ENSDNOG00000000833	PARN	98	95.683	Dasypus_novemcinctus
ENSUMAG00000004527	PARN	74	93.916	ENSETEG00000014828	-	78	93.916	Echinops_telfairi
ENSUMAG00000004527	PARN	100	93.730	ENSEASG00005011400	PARN	100	93.730	Equus_asinus_asinus
ENSUMAG00000004527	PARN	100	93.574	ENSECAG00000017792	PARN	100	93.574	Equus_caballus
ENSUMAG00000004527	PARN	86	85.068	ENSEEUG00000010370	PARN	86	85.068	Erinaceus_europaeus
ENSUMAG00000004527	PARN	90	72.680	ENSELUG00000013139	parn	75	72.680	Esox_lucius
ENSUMAG00000004527	PARN	100	96.395	ENSFCAG00000044961	PARN	100	98.305	Felis_catus
ENSUMAG00000004527	PARN	58	30.829	ENSFALG00000012081	PNLDC1	70	30.829	Ficedula_albicollis
ENSUMAG00000004527	PARN	99	82.409	ENSFALG00000003911	PARN	98	82.409	Ficedula_albicollis
ENSUMAG00000004527	PARN	100	89.342	ENSFDAG00000009234	PARN	100	89.342	Fukomys_damarensis
ENSUMAG00000004527	PARN	92	65.943	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSUMAG00000004527	PARN	83	76.493	ENSGMOG00000003231	parn	97	76.493	Gadus_morhua
ENSUMAG00000004527	PARN	100	81.591	ENSGALG00000003091	PARN	100	81.591	Gallus_gallus
ENSUMAG00000004527	PARN	100	64.900	ENSGAFG00000011061	parn	84	71.906	Gambusia_affinis
ENSUMAG00000004527	PARN	100	68.012	ENSGACG00000019501	parn	100	68.012	Gasterosteus_aculeatus
ENSUMAG00000004527	PARN	51	79.331	ENSGAGG00000023281	PARN	83	79.331	Gopherus_agassizii
ENSUMAG00000004527	PARN	97	93.559	ENSGGOG00000025224	PARN	100	98.305	Gorilla_gorilla
ENSUMAG00000004527	PARN	83	79.213	ENSHBUG00000017906	parn	90	77.095	Haplochromis_burtoni
ENSUMAG00000004527	PARN	100	89.342	ENSHGLG00000010886	PARN	100	89.342	Heterocephalus_glaber_female
ENSUMAG00000004527	PARN	100	89.342	ENSHGLG00100014659	PARN	100	89.342	Heterocephalus_glaber_male
ENSUMAG00000004527	PARN	82	73.346	ENSHCOG00000008683	parn	91	73.346	Hippocampus_comes
ENSUMAG00000004527	PARN	84	65.854	ENSIPUG00000012401	parn	79	65.854	Ictalurus_punctatus
ENSUMAG00000004527	PARN	100	91.536	ENSSTOG00000007519	PARN	100	91.536	Ictidomys_tridecemlineatus
ENSUMAG00000004527	PARN	100	88.401	ENSJJAG00000023049	Parn	100	88.401	Jaculus_jaculus
ENSUMAG00000004527	PARN	95	71.545	ENSKMAG00000009462	parn	84	73.514	Kryptolebias_marmoratus
ENSUMAG00000004527	PARN	92	71.669	ENSLBEG00000009167	parn	90	71.669	Labrus_bergylta
ENSUMAG00000004527	PARN	79	78.770	ENSLACG00000004207	PARN	100	77.123	Latimeria_chalumnae
ENSUMAG00000004527	PARN	97	71.632	ENSLOCG00000000715	parn	87	73.520	Lepisosteus_oculatus
ENSUMAG00000004527	PARN	100	92.633	ENSLAFG00000015036	PARN	100	92.633	Loxodonta_africana
ENSUMAG00000004527	PARN	100	88.281	ENSMFAG00000044852	PARN	100	98.305	Macaca_fascicularis
ENSUMAG00000004527	PARN	100	93.114	ENSMMUG00000018849	PARN	100	98.305	Macaca_mulatta
ENSUMAG00000004527	PARN	100	93.271	ENSMNEG00000045108	PARN	100	98.305	Macaca_nemestrina
ENSUMAG00000004527	PARN	100	93.114	ENSMLEG00000031743	PARN	100	98.305	Mandrillus_leucophaeus
ENSUMAG00000004527	PARN	92	72.222	ENSMAMG00000006939	parn	84	72.222	Mastacembelus_armatus
ENSUMAG00000004527	PARN	89	73.509	ENSMZEG00005013590	parn	95	73.509	Maylandia_zebra
ENSUMAG00000004527	PARN	95	81.506	ENSMGAG00000001004	PARN	95	81.506	Meleagris_gallopavo
ENSUMAG00000004527	PARN	100	79.045	ENSMAUG00000008025	Parn	100	79.045	Mesocricetus_auratus
ENSUMAG00000004527	PARN	100	93.887	ENSMICG00000016053	PARN	100	100.000	Microcebus_murinus
ENSUMAG00000004527	PARN	77	91.296	ENSMOCG00000022211	Parn	100	91.296	Microtus_ochrogaster
ENSUMAG00000004527	PARN	83	76.449	ENSMMOG00000011333	parn	87	76.449	Mola_mola
ENSUMAG00000004527	PARN	77	93.750	ENSMODG00000004915	PARN	99	93.750	Monodelphis_domestica
ENSUMAG00000004527	PARN	83	78.585	ENSMALG00000019426	parn	91	78.585	Monopterus_albus
ENSUMAG00000004527	PARN	100	86.050	MGP_CAROLIEiJ_G0020466	Parn	100	86.050	Mus_caroli
ENSUMAG00000004527	PARN	51	30.723	ENSMUSG00000073460	Pnldc1	97	30.723	Mus_musculus
ENSUMAG00000004527	PARN	100	86.050	ENSMUSG00000022685	Parn	100	95.122	Mus_musculus
ENSUMAG00000004527	PARN	100	85.737	MGP_PahariEiJ_G0016172	Parn	100	85.737	Mus_pahari
ENSUMAG00000004527	PARN	100	86.050	MGP_SPRETEiJ_G0021361	Parn	100	86.050	Mus_spretus
ENSUMAG00000004527	PARN	100	96.865	ENSMPUG00000014464	PARN	100	96.865	Mustela_putorius_furo
ENSUMAG00000004527	PARN	77	94.737	ENSMLUG00000005414	PARN	100	94.737	Myotis_lucifugus
ENSUMAG00000004527	PARN	83	76.779	ENSNBRG00000006805	parn	90	76.779	Neolamprologus_brichardi
ENSUMAG00000004527	PARN	100	93.114	ENSNLEG00000010241	PARN	100	98.305	Nomascus_leucogenys
ENSUMAG00000004527	PARN	99	61.331	ENSMEUG00000008178	-	100	61.331	Notamacropus_eugenii
ENSUMAG00000004527	PARN	99	86.054	ENSOPRG00000012187	PARN	100	86.054	Ochotona_princeps
ENSUMAG00000004527	PARN	100	81.123	ENSODEG00000001617	PARN	100	81.123	Octodon_degus
ENSUMAG00000004527	PARN	100	69.585	ENSONIG00000000151	parn	100	69.585	Oreochromis_niloticus
ENSUMAG00000004527	PARN	60	82.078	ENSOANG00000020155	-	97	83.158	Ornithorhynchus_anatinus
ENSUMAG00000004527	PARN	99	91.181	ENSOCUG00000000322	PARN	100	91.181	Oryctolagus_cuniculus
ENSUMAG00000004527	PARN	83	77.239	ENSORLG00020010313	parn	100	64.493	Oryzias_latipes_hni
ENSUMAG00000004527	PARN	83	77.239	ENSORLG00015000300	parn	100	64.493	Oryzias_latipes_hsok
ENSUMAG00000004527	PARN	100	65.926	ENSOMEG00000019555	parn	100	65.926	Oryzias_melastigma
ENSUMAG00000004527	PARN	77	93.333	ENSOGAG00000014626	PARN	100	93.333	Otolemur_garnettii
ENSUMAG00000004527	PARN	77	97.773	ENSOARG00000007574	PARN	100	97.773	Ovis_aries
ENSUMAG00000004527	PARN	100	92.958	ENSPPAG00000031438	PARN	100	98.305	Pan_paniscus
ENSUMAG00000004527	PARN	100	96.238	ENSPPRG00000018583	PARN	100	98.305	Panthera_pardus
ENSUMAG00000004527	PARN	100	96.238	ENSPTIG00000012135	PARN	100	98.305	Panthera_tigris_altaica
ENSUMAG00000004527	PARN	100	92.958	ENSPTRG00000007792	PARN	100	98.305	Pan_troglodytes
ENSUMAG00000004527	PARN	100	90.141	ENSPANG00000020099	PARN	100	98.305	Papio_anubis
ENSUMAG00000004527	PARN	91	73.575	ENSPKIG00000022807	parn	90	70.052	Paramormyrops_kingsleyae
ENSUMAG00000004527	PARN	97	84.640	ENSPSIG00000014804	PARN	100	83.448	Pelodiscus_sinensis
ENSUMAG00000004527	PARN	80	76.654	ENSPMGG00000014431	parn	77	73.285	Periophthalmus_magnuspinnatus
ENSUMAG00000004527	PARN	100	83.386	ENSPEMG00000018439	Parn	100	83.386	Peromyscus_maniculatus_bairdii
ENSUMAG00000004527	PARN	80	67.379	ENSPMAG00000003956	parn	98	67.636	Petromyzon_marinus
ENSUMAG00000004527	PARN	66	86.052	ENSPCIG00000001259	PARN	91	93.220	Phascolarctos_cinereus
ENSUMAG00000004527	PARN	83	77.799	ENSPFOG00000012823	parn	78	77.799	Poecilia_formosa
ENSUMAG00000004527	PARN	83	77.985	ENSPLAG00000006395	parn	78	77.985	Poecilia_latipinna
ENSUMAG00000004527	PARN	83	77.985	ENSPMEG00000007711	parn	84	71.980	Poecilia_mexicana
ENSUMAG00000004527	PARN	83	77.612	ENSPREG00000000147	parn	84	71.644	Poecilia_reticulata
ENSUMAG00000004527	PARN	100	92.668	ENSPPYG00000007123	PARN	100	92.668	Pongo_abelii
ENSUMAG00000004527	PARN	95	82.479	ENSPCAG00000001741	PARN	100	82.479	Procavia_capensis
ENSUMAG00000004527	PARN	100	91.693	ENSPCOG00000019292	PARN	100	100.000	Propithecus_coquereli
ENSUMAG00000004527	PARN	99	90.016	ENSPVAG00000002547	PARN	100	90.016	Pteropus_vampyrus
ENSUMAG00000004527	PARN	83	79.213	ENSPNYG00000006835	parn	95	70.753	Pundamilia_nyererei
ENSUMAG00000004527	PARN	83	74.102	ENSPNAG00000018905	parn	84	74.102	Pygocentrus_nattereri
ENSUMAG00000004527	PARN	100	82.927	ENSRNOG00000002912	Parn	98	86.869	Rattus_norvegicus
ENSUMAG00000004527	PARN	52	89.790	ENSRBIG00000018726	PARN	100	89.790	Rhinopithecus_bieti
ENSUMAG00000004527	PARN	52	89.790	ENSRROG00000011162	-	100	89.790	Rhinopithecus_roxellana
ENSUMAG00000004527	PARN	100	91.236	ENSSBOG00000034726	PARN	100	98.305	Saimiri_boliviensis_boliviensis
ENSUMAG00000004527	PARN	66	93.062	ENSSHAG00000008493	PARN	94	93.062	Sarcophilus_harrisii
ENSUMAG00000004527	PARN	62	30.073	ENSSHAG00000015192	PNLDC1	65	30.073	Sarcophilus_harrisii
ENSUMAG00000004527	PARN	96	72.358	ENSSFOG00015014165	parn	96	71.812	Scleropages_formosus
ENSUMAG00000004527	PARN	100	62.096	ENSSMAG00000000685	parn	100	62.250	Scophthalmus_maximus
ENSUMAG00000004527	PARN	86	75.812	ENSSDUG00000014555	parn	80	75.812	Seriola_dumerili
ENSUMAG00000004527	PARN	91	81.002	ENSSARG00000014339	PARN	100	81.002	Sorex_araneus
ENSUMAG00000004527	PARN	100	84.326	ENSSPUG00000007719	PARN	100	84.326	Sphenodon_punctatus
ENSUMAG00000004527	PARN	91	73.737	ENSSPAG00000007095	parn	86	74.719	Stegastes_partitus
ENSUMAG00000004527	PARN	100	93.887	ENSSSCG00000007878	PARN	89	93.887	Sus_scrofa
ENSUMAG00000004527	PARN	55	30.919	ENSTGUG00000011418	PNLDC1	68	30.919	Taeniopygia_guttata
ENSUMAG00000004527	PARN	99	82.306	ENSTGUG00000004971	PARN	99	82.306	Taeniopygia_guttata
ENSUMAG00000004527	PARN	100	68.266	ENSTNIG00000008252	parn	100	68.421	Tetraodon_nigroviridis
ENSUMAG00000004527	PARN	91	78.584	ENSTBEG00000010407	PARN	100	78.584	Tupaia_belangeri
ENSUMAG00000004527	PARN	99	89.540	ENSTTRG00000002843	PARN	100	89.540	Tursiops_truncatus
ENSUMAG00000004527	PARN	68	86.239	ENSUAMG00000008283	PARN	90	86.239	Ursus_americanus
ENSUMAG00000004527	PARN	96	91.042	ENSVPAG00000008968	PARN	100	91.042	Vicugna_pacos
ENSUMAG00000004527	PARN	100	97.492	ENSVVUG00000019509	PARN	100	97.492	Vulpes_vulpes
ENSUMAG00000004527	PARN	100	74.531	ENSXETG00000010994	parn	100	82.510	Xenopus_tropicalis
ENSUMAG00000004527	PARN	90	69.191	ENSXCOG00000015990	parn	96	68.359	Xiphophorus_couchianus
ENSUMAG00000004527	PARN	92	72.391	ENSXMAG00000014783	parn	84	72.391	Xiphophorus_maculatus