EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000005029 (Gene tree)
Gene ID: 103670094
Gene Symbol: CPSF2
Alias: -
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 30979 bases
Position: chrKK498517.1:7490111-7521089
Accession: 103670094
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000006404	Beta-Casp	PF10996.8	9.7e-21	1	1
ENSUMAP00000006402	Beta-Casp	PF10996.8	1.1e-20	1	1
ENSUMAP00000006404	Lactamase_B	PF00753.27	1.7e-06	1	1
ENSUMAP00000006402	Lactamase_B	PF00753.27	1.8e-06	1	1
ENSUMAP00000006402	RMMBL	PF07521.12	1.3e-15	1	1
ENSUMAP00000006404	RMMBL	PF07521.12	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000007703	CPSF2-202	2370	-	ENSUMAP00000006404	715 (aa)	XP_008696719	UPI0004E0256C
ENSUMAT00000007701	CPSF2-201	2571	-	ENSUMAP00000006402	782 (aa)	XP_008696711	UPI000184C328

Gene Model

Click here to download ENSUMAG00000005029's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000005029's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000005029	CPSF2	100	99.744	ENSG00000165934	CPSF2	100	100.000	Homo_sapiens
ENSUMAG00000005029	CPSF2	99	90.580	ENSAPOG00000001242	cpsf2	100	85.932	Acanthochromis_polyacanthus
ENSUMAG00000005029	CPSF2	53	99.738	ENSAMEG00000014835	-	100	99.738	Ailuropoda_melanoleuca
ENSUMAG00000005029	CPSF2	99	91.566	ENSACIG00000009331	cpsf2	100	86.329	Amphilophus_citrinellus
ENSUMAG00000005029	CPSF2	99	90.338	ENSAOCG00000014095	cpsf2	100	86.058	Amphiprion_ocellaris
ENSUMAG00000005029	CPSF2	99	90.338	ENSAPEG00000009158	cpsf2	100	86.058	Amphiprion_percula
ENSUMAG00000005029	CPSF2	96	86.316	ENSATEG00000017644	cpsf2	100	84.474	Anabas_testudineus
ENSUMAG00000005029	CPSF2	100	96.178	ENSAPLG00000006330	CPSF2	100	96.178	Anas_platyrhynchos
ENSUMAG00000005029	CPSF2	100	95.147	ENSACAG00000009245	CPSF2	100	95.147	Anolis_carolinensis
ENSUMAG00000005029	CPSF2	100	99.744	ENSANAG00000022915	CPSF2	100	99.744	Aotus_nancymaae
ENSUMAG00000005029	CPSF2	100	91.304	ENSAMXG00000018696	cpsf2	100	85.769	Astyanax_mexicanus
ENSUMAG00000005029	CPSF2	100	99.744	ENSBTAG00000010227	CPSF2	100	99.744	Bos_taurus
ENSUMAG00000005029	CPSF2	96	50.808	WBGene00017313	cpsf-2	100	41.032	Caenorhabditis_elegans
ENSUMAG00000005029	CPSF2	100	99.744	ENSCJAG00000018069	CPSF2	100	99.744	Callithrix_jacchus
ENSUMAG00000005029	CPSF2	100	99.872	ENSCAFG00000010909	CPSF2	100	99.872	Canis_familiaris
ENSUMAG00000005029	CPSF2	100	99.872	ENSCAFG00020020670	CPSF2	100	99.872	Canis_lupus_dingo
ENSUMAG00000005029	CPSF2	100	99.744	ENSCHIG00000023848	CPSF2	100	99.744	Capra_hircus
ENSUMAG00000005029	CPSF2	100	99.279	ENSTSYG00000009036	CPSF2	100	98.593	Carlito_syrichta
ENSUMAG00000005029	CPSF2	100	100.000	ENSCPOG00000010899	CPSF2	100	100.000	Cavia_porcellus
ENSUMAG00000005029	CPSF2	100	99.744	ENSCCAG00000028088	CPSF2	100	99.744	Cebus_capucinus
ENSUMAG00000005029	CPSF2	100	99.872	ENSCATG00000030132	CPSF2	100	99.872	Cercocebus_atys
ENSUMAG00000005029	CPSF2	100	99.872	ENSCLAG00000012404	CPSF2	100	99.872	Chinchilla_lanigera
ENSUMAG00000005029	CPSF2	100	99.872	ENSCSAG00000011300	CPSF2	100	99.872	Chlorocebus_sabaeus
ENSUMAG00000005029	CPSF2	100	92.711	ENSCHOG00000012904	CPSF2	100	92.711	Choloepus_hoffmanni
ENSUMAG00000005029	CPSF2	100	97.585	ENSCPBG00000008766	CPSF2	97	96.552	Chrysemys_picta_bellii
ENSUMAG00000005029	CPSF2	100	54.795	ENSCING00000007881	-	89	66.247	Ciona_intestinalis
ENSUMAG00000005029	CPSF2	94	99.863	ENSCANG00000041651	CPSF2	100	99.863	Colobus_angolensis_palliatus
ENSUMAG00000005029	CPSF2	100	98.798	ENSCGRG00001006901	Cpsf2	100	98.721	Cricetulus_griseus_chok1gshd
ENSUMAG00000005029	CPSF2	100	98.798	ENSCGRG00000012416	Cpsf2	100	98.721	Cricetulus_griseus_crigri
ENSUMAG00000005029	CPSF2	97	89.231	ENSCSEG00000004116	cpsf2	100	83.904	Cynoglossus_semilaevis
ENSUMAG00000005029	CPSF2	99	89.614	ENSCVAG00000000095	cpsf2	100	85.425	Cyprinodon_variegatus
ENSUMAG00000005029	CPSF2	100	85.696	ENSDARG00000028971	cpsf2	100	85.696	Danio_rerio
ENSUMAG00000005029	CPSF2	100	99.744	ENSDNOG00000042757	CPSF2	100	99.744	Dasypus_novemcinctus
ENSUMAG00000005029	CPSF2	100	99.616	ENSDORG00000013709	Cpsf2	100	99.616	Dipodomys_ordii
ENSUMAG00000005029	CPSF2	98	67.813	FBgn0027873	Cpsf100	87	68.112	Drosophila_melanogaster
ENSUMAG00000005029	CPSF2	93	98.400	ENSETEG00000012123	CPSF2	100	90.549	Echinops_telfairi
ENSUMAG00000005029	CPSF2	52	76.471	ENSEBUG00000012098	cpsf2	93	76.471	Eptatretus_burgeri
ENSUMAG00000005029	CPSF2	91	97.611	ENSEASG00005021193	CPSF2	100	97.611	Equus_asinus_asinus
ENSUMAG00000005029	CPSF2	100	99.744	ENSECAG00000023935	CPSF2	100	99.744	Equus_caballus
ENSUMAG00000005029	CPSF2	100	84.065	ENSELUG00000008442	cpsf2	100	84.065	Esox_lucius
ENSUMAG00000005029	CPSF2	100	99.744	ENSFCAG00000007886	CPSF2	100	99.744	Felis_catus
ENSUMAG00000005029	CPSF2	100	96.424	ENSFALG00000002412	CPSF2	100	96.424	Ficedula_albicollis
ENSUMAG00000005029	CPSF2	100	99.872	ENSFDAG00000006327	CPSF2	100	99.872	Fukomys_damarensis
ENSUMAG00000005029	CPSF2	96	89.372	ENSFHEG00000015465	cpsf2	98	84.837	Fundulus_heteroclitus
ENSUMAG00000005029	CPSF2	100	83.586	ENSGMOG00000008761	cpsf2	100	83.586	Gadus_morhua
ENSUMAG00000005029	CPSF2	100	95.658	ENSGALG00000010783	CPSF2	100	96.169	Gallus_gallus
ENSUMAG00000005029	CPSF2	99	89.855	ENSGAFG00000001407	cpsf2	100	85.551	Gambusia_affinis
ENSUMAG00000005029	CPSF2	100	84.664	ENSGACG00000008418	cpsf2	100	84.664	Gasterosteus_aculeatus
ENSUMAG00000005029	CPSF2	100	97.826	ENSGAGG00000008287	CPSF2	100	96.679	Gopherus_agassizii
ENSUMAG00000005029	CPSF2	100	99.744	ENSGGOG00000011799	CPSF2	100	99.744	Gorilla_gorilla
ENSUMAG00000005029	CPSF2	99	90.338	ENSHBUG00000023466	cpsf2	100	85.298	Haplochromis_burtoni
ENSUMAG00000005029	CPSF2	100	100.000	ENSHGLG00000018311	CPSF2	100	99.744	Heterocephalus_glaber_female
ENSUMAG00000005029	CPSF2	100	100.000	ENSHGLG00100016460	CPSF2	100	99.744	Heterocephalus_glaber_male
ENSUMAG00000005029	CPSF2	99	89.346	ENSHCOG00000019527	cpsf2	98	84.664	Hippocampus_comes
ENSUMAG00000005029	CPSF2	100	85.769	ENSIPUG00000020857	cpsf2	100	85.769	Ictalurus_punctatus
ENSUMAG00000005029	CPSF2	100	99.872	ENSSTOG00000009528	CPSF2	100	99.872	Ictidomys_tridecemlineatus
ENSUMAG00000005029	CPSF2	100	99.488	ENSJJAG00000017925	Cpsf2	100	99.488	Jaculus_jaculus
ENSUMAG00000005029	CPSF2	100	84.791	ENSKMAG00000019429	cpsf2	100	84.791	Kryptolebias_marmoratus
ENSUMAG00000005029	CPSF2	95	84.203	ENSLBEG00000011585	cpsf2	100	84.358	Labrus_bergylta
ENSUMAG00000005029	CPSF2	100	92.788	ENSLACG00000019024	CPSF2	100	90.038	Latimeria_chalumnae
ENSUMAG00000005029	CPSF2	100	92.530	ENSLOCG00000014102	cpsf2	100	87.706	Lepisosteus_oculatus
ENSUMAG00000005029	CPSF2	100	99.490	ENSLAFG00000004891	CPSF2	100	99.490	Loxodonta_africana
ENSUMAG00000005029	CPSF2	100	99.872	ENSMFAG00000041212	CPSF2	100	99.872	Macaca_fascicularis
ENSUMAG00000005029	CPSF2	100	99.872	ENSMMUG00000000699	CPSF2	100	99.872	Macaca_mulatta
ENSUMAG00000005029	CPSF2	100	99.872	ENSMNEG00000031584	CPSF2	100	99.872	Macaca_nemestrina
ENSUMAG00000005029	CPSF2	100	99.872	ENSMLEG00000029394	CPSF2	100	99.872	Mandrillus_leucophaeus
ENSUMAG00000005029	CPSF2	100	85.932	ENSMAMG00000004235	cpsf2	100	85.932	Mastacembelus_armatus
ENSUMAG00000005029	CPSF2	99	90.338	ENSMZEG00005001769	cpsf2	100	85.425	Maylandia_zebra
ENSUMAG00000005029	CPSF2	100	95.663	ENSMGAG00000013122	CPSF2	100	96.173	Meleagris_gallopavo
ENSUMAG00000005029	CPSF2	100	98.798	ENSMAUG00000015160	Cpsf2	100	98.721	Mesocricetus_auratus
ENSUMAG00000005029	CPSF2	100	99.744	ENSMICG00000016441	CPSF2	100	99.744	Microcebus_murinus
ENSUMAG00000005029	CPSF2	100	98.798	ENSMOCG00000015372	Cpsf2	100	98.721	Microtus_ochrogaster
ENSUMAG00000005029	CPSF2	100	81.242	ENSMMOG00000015590	cpsf2	100	81.242	Mola_mola
ENSUMAG00000005029	CPSF2	100	99.105	ENSMODG00000002042	CPSF2	100	99.105	Monodelphis_domestica
ENSUMAG00000005029	CPSF2	100	88.889	ENSMALG00000022275	cpsf2	100	82.763	Monopterus_albus
ENSUMAG00000005029	CPSF2	100	98.317	ENSMUSG00000041781	Cpsf2	100	98.210	Mus_musculus
ENSUMAG00000005029	CPSF2	100	98.465	MGP_PahariEiJ_G0029791	Cpsf2	100	98.465	Mus_pahari
ENSUMAG00000005029	CPSF2	100	98.317	MGP_SPRETEiJ_G0018877	Cpsf2	100	98.210	Mus_spretus
ENSUMAG00000005029	CPSF2	100	99.872	ENSMPUG00000007617	CPSF2	98	99.872	Mustela_putorius_furo
ENSUMAG00000005029	CPSF2	100	99.105	ENSMLUG00000005570	CPSF2	100	99.105	Myotis_lucifugus
ENSUMAG00000005029	CPSF2	100	99.233	ENSNGAG00000020312	Cpsf2	100	99.233	Nannospalax_galili
ENSUMAG00000005029	CPSF2	99	90.580	ENSNBRG00000022402	cpsf2	100	85.805	Neolamprologus_brichardi
ENSUMAG00000005029	CPSF2	100	98.849	ENSNLEG00000017132	CPSF2	100	98.849	Nomascus_leucogenys
ENSUMAG00000005029	CPSF2	91	99.676	ENSMEUG00000008138	CPSF2	91	99.676	Notamacropus_eugenii
ENSUMAG00000005029	CPSF2	94	91.803	ENSOPRG00000008484	-	100	91.803	Ochotona_princeps
ENSUMAG00000005029	CPSF2	100	99.616	ENSODEG00000008682	CPSF2	100	99.616	Octodon_degus
ENSUMAG00000005029	CPSF2	99	90.821	ENSONIG00000005901	cpsf2	100	86.185	Oreochromis_niloticus
ENSUMAG00000005029	CPSF2	100	99.038	ENSOANG00000003822	CPSF2	100	98.721	Ornithorhynchus_anatinus
ENSUMAG00000005029	CPSF2	100	99.488	ENSOCUG00000005713	CPSF2	100	99.488	Oryctolagus_cuniculus
ENSUMAG00000005029	CPSF2	100	80.101	ENSORLG00000011628	cpsf2	100	80.101	Oryzias_latipes
ENSUMAG00000005029	CPSF2	99	90.097	ENSORLG00020016980	cpsf2	100	84.918	Oryzias_latipes_hni
ENSUMAG00000005029	CPSF2	99	90.097	ENSORLG00015011910	cpsf2	100	84.918	Oryzias_latipes_hsok
ENSUMAG00000005029	CPSF2	100	84.157	ENSOMEG00000022876	cpsf2	100	84.157	Oryzias_melastigma
ENSUMAG00000005029	CPSF2	100	99.669	ENSOARG00000012889	CPSF2	100	96.684	Ovis_aries
ENSUMAG00000005029	CPSF2	100	99.744	ENSPPAG00000039666	CPSF2	100	99.744	Pan_paniscus
ENSUMAG00000005029	CPSF2	99	99.744	ENSPPRG00000010869	CPSF2	100	99.744	Panthera_pardus
ENSUMAG00000005029	CPSF2	100	99.744	ENSPTIG00000021202	CPSF2	100	99.744	Panthera_tigris_altaica
ENSUMAG00000005029	CPSF2	100	99.744	ENSPTRG00000006651	CPSF2	100	99.744	Pan_troglodytes
ENSUMAG00000005029	CPSF2	100	99.872	ENSPANG00000017417	CPSF2	100	99.872	Papio_anubis
ENSUMAG00000005029	CPSF2	100	82.211	ENSPKIG00000021453	cpsf2	100	82.211	Paramormyrops_kingsleyae
ENSUMAG00000005029	CPSF2	100	96.041	ENSPSIG00000006289	CPSF2	100	96.041	Pelodiscus_sinensis
ENSUMAG00000005029	CPSF2	73	87.946	ENSPMGG00000002511	cpsf2	100	79.900	Periophthalmus_magnuspinnatus
ENSUMAG00000005029	CPSF2	100	98.977	ENSPEMG00000007917	Cpsf2	100	98.977	Peromyscus_maniculatus_bairdii
ENSUMAG00000005029	CPSF2	100	84.988	ENSPMAG00000006205	cpsf2	92	84.211	Petromyzon_marinus
ENSUMAG00000005029	CPSF2	100	99.105	ENSPCIG00000011393	CPSF2	100	99.105	Phascolarctos_cinereus
ENSUMAG00000005029	CPSF2	99	89.614	ENSPFOG00000018648	cpsf2	100	85.425	Poecilia_formosa
ENSUMAG00000005029	CPSF2	99	89.614	ENSPLAG00000019199	cpsf2	99	85.425	Poecilia_latipinna
ENSUMAG00000005029	CPSF2	96	89.855	ENSPMEG00000012100	cpsf2	100	85.160	Poecilia_mexicana
ENSUMAG00000005029	CPSF2	99	89.614	ENSPREG00000008960	cpsf2	100	85.298	Poecilia_reticulata
ENSUMAG00000005029	CPSF2	63	99.597	ENSPPYG00000029685	-	100	99.597	Pongo_abelii
ENSUMAG00000005029	CPSF2	100	99.361	ENSPCAG00000012477	CPSF2	100	99.361	Procavia_capensis
ENSUMAG00000005029	CPSF2	100	99.744	ENSPCOG00000026387	CPSF2	100	99.744	Propithecus_coquereli
ENSUMAG00000005029	CPSF2	65	100.000	ENSPVAG00000004223	CPSF2	65	100.000	Pteropus_vampyrus
ENSUMAG00000005029	CPSF2	99	90.361	ENSPNYG00000023356	cpsf2	100	85.443	Pundamilia_nyererei
ENSUMAG00000005029	CPSF2	100	91.304	ENSPNAG00000001849	cpsf2	100	86.912	Pygocentrus_nattereri
ENSUMAG00000005029	CPSF2	100	98.593	ENSRNOG00000005733	Cpsf2	100	98.593	Rattus_norvegicus
ENSUMAG00000005029	CPSF2	100	99.872	ENSRBIG00000044792	CPSF2	100	99.872	Rhinopithecus_bieti
ENSUMAG00000005029	CPSF2	100	99.872	ENSRROG00000034875	CPSF2	100	99.872	Rhinopithecus_roxellana
ENSUMAG00000005029	CPSF2	100	99.744	ENSSBOG00000024571	CPSF2	100	99.744	Saimiri_boliviensis_boliviensis
ENSUMAG00000005029	CPSF2	100	99.233	ENSSHAG00000010458	CPSF2	100	99.233	Sarcophilus_harrisii
ENSUMAG00000005029	CPSF2	100	91.304	ENSSFOG00015002117	cpsf2	100	87.294	Scleropages_formosus
ENSUMAG00000005029	CPSF2	99	89.831	ENSSMAG00000002001	cpsf2	100	84.157	Scophthalmus_maximus
ENSUMAG00000005029	CPSF2	99	91.304	ENSSDUG00000004084	cpsf2	100	86.312	Seriola_dumerili
ENSUMAG00000005029	CPSF2	100	85.805	ENSSLDG00000024330	cpsf2	100	85.805	Seriola_lalandi_dorsalis
ENSUMAG00000005029	CPSF2	58	100.000	ENSSARG00000009784	-	63	100.000	Sorex_araneus
ENSUMAG00000005029	CPSF2	100	95.913	ENSSPUG00000013485	CPSF2	100	95.913	Sphenodon_punctatus
ENSUMAG00000005029	CPSF2	100	85.298	ENSSPAG00000013284	cpsf2	100	85.298	Stegastes_partitus
ENSUMAG00000005029	CPSF2	100	99.744	ENSSSCG00000002447	CPSF2	100	99.744	Sus_scrofa
ENSUMAG00000005029	CPSF2	100	96.552	ENSTGUG00000012571	-	100	96.552	Taeniopygia_guttata
ENSUMAG00000005029	CPSF2	100	84.664	ENSTRUG00000003742	cpsf2	100	84.664	Takifugu_rubripes
ENSUMAG00000005029	CPSF2	100	83.565	ENSTNIG00000012228	cpsf2	100	84.324	Tetraodon_nigroviridis
ENSUMAG00000005029	CPSF2	91	100.000	ENSTBEG00000004530	CPSF2	94	100.000	Tupaia_belangeri
ENSUMAG00000005029	CPSF2	88	100.000	ENSTTRG00000008697	CPSF2	88	100.000	Tursiops_truncatus
ENSUMAG00000005029	CPSF2	100	100.000	ENSUAMG00000028071	CPSF2	100	100.000	Ursus_americanus
ENSUMAG00000005029	CPSF2	99	99.872	ENSVPAG00000003503	CPSF2	100	99.872	Vicugna_pacos
ENSUMAG00000005029	CPSF2	100	99.872	ENSVVUG00000024642	CPSF2	100	99.872	Vulpes_vulpes
ENSUMAG00000005029	CPSF2	100	92.209	ENSXETG00000010289	cpsf2	100	92.209	Xenopus_tropicalis
ENSUMAG00000005029	CPSF2	99	90.097	ENSXCOG00000001764	cpsf2	100	85.805	Xiphophorus_couchianus
ENSUMAG00000005029	CPSF2	99	90.097	ENSXMAG00000017048	cpsf2	100	85.932	Xiphophorus_maculatus