EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000005552 (Gene tree)
Gene ID: 103667673
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 127657 bases
Position: chrKK498623.1:3372106-3499762
Accession: 103667673
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000007151	R3H	PF01424.22	1.9e-11	1	1
ENSUMAP00000007145	R3H	PF01424.22	2.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000008576	R3HDM1-201	4424	XM_008695855	ENSUMAP00000007145	1046 (aa)	XP_008694077	UPI0004E01B50
ENSUMAT00000008582	R3HDM1-202	4169	XM_008695857	ENSUMAP00000007151	961 (aa)	XP_008694079	-

Gene Model

Click here to download ENSUMAG00000005552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000005552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000005552	R3HDM1	66	50.000	ENSUMAG00000006519	ARPP21	85	38.720
ENSUMAG00000005552	R3HDM1	99	47.394	ENSUMAG00000019179	R3HDM2	94	55.208

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000005552	R3HDM1	100	94.251	ENSG00000048991	R3HDM1	100	94.148	Homo_sapiens
ENSUMAG00000005552	R3HDM1	88	63.200	ENSAPOG00000020850	r3hdm1	92	63.200	Acanthochromis_polyacanthus
ENSUMAG00000005552	R3HDM1	100	96.254	ENSAMEG00000014886	R3HDM1	100	94.560	Ailuropoda_melanoleuca
ENSUMAG00000005552	R3HDM1	87	57.843	ENSAOCG00000005192	r3hdm1	95	57.843	Amphiprion_ocellaris
ENSUMAG00000005552	R3HDM1	87	62.933	ENSAPEG00000016108	r3hdm1	95	63.733	Amphiprion_percula
ENSUMAG00000005552	R3HDM1	87	63.172	ENSATEG00000000232	r3hdm1	99	48.024	Anabas_testudineus
ENSUMAG00000005552	R3HDM1	100	75.928	ENSAPLG00000015231	R3HDM1	100	76.018	Anas_platyrhynchos
ENSUMAG00000005552	R3HDM1	100	76.355	ENSACAG00000001676	R3HDM1	100	73.509	Anolis_carolinensis
ENSUMAG00000005552	R3HDM1	100	94.154	ENSANAG00000035334	R3HDM1	100	97.238	Aotus_nancymaae
ENSUMAG00000005552	R3HDM1	87	61.867	ENSACLG00000027282	r3hdm1	94	61.867	Astatotilapia_calliptera
ENSUMAG00000005552	R3HDM1	100	74.124	ENSAMXG00000012861	R3HDM1	100	60.731	Astyanax_mexicanus
ENSUMAG00000005552	R3HDM1	58	40.092	ENSAMXG00000020587	arpp21	78	41.552	Astyanax_mexicanus
ENSUMAG00000005552	R3HDM1	87	74.603	ENSAMXG00000003536	r3hdm1	100	53.480	Astyanax_mexicanus
ENSUMAG00000005552	R3HDM1	100	93.283	ENSBTAG00000013302	R3HDM1	100	92.715	Bos_taurus
ENSUMAG00000005552	R3HDM1	100	94.245	ENSCJAG00000011718	R3HDM1	100	94.142	Callithrix_jacchus
ENSUMAG00000005552	R3HDM1	100	95.765	ENSCAFG00000005075	R3HDM1	100	94.198	Canis_familiaris
ENSUMAG00000005552	R3HDM1	100	95.922	ENSCAFG00020016119	R3HDM1	100	94.283	Canis_lupus_dingo
ENSUMAG00000005552	R3HDM1	100	92.974	ENSCHIG00000020851	R3HDM1	100	91.371	Capra_hircus
ENSUMAG00000005552	R3HDM1	100	85.413	ENSCPOG00000012784	R3HDM1	93	95.023	Cavia_porcellus
ENSUMAG00000005552	R3HDM1	100	93.943	ENSCCAG00000027199	R3HDM1	100	93.840	Cebus_capucinus
ENSUMAG00000005552	R3HDM1	100	93.943	ENSCATG00000023642	R3HDM1	100	93.840	Cercocebus_atys
ENSUMAG00000005552	R3HDM1	100	85.714	ENSCLAG00000007962	R3HDM1	91	96.606	Chinchilla_lanigera
ENSUMAG00000005552	R3HDM1	100	87.192	ENSCSAG00000016356	R3HDM1	100	87.071	Chlorocebus_sabaeus
ENSUMAG00000005552	R3HDM1	79	93.939	ENSCHOG00000013638	R3HDM1	77	92.500	Choloepus_hoffmanni
ENSUMAG00000005552	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSUMAG00000005552	R3HDM1	100	93.846	ENSCANG00000034748	R3HDM1	100	93.744	Colobus_angolensis_palliatus
ENSUMAG00000005552	R3HDM1	99	85.714	ENSCGRG00001012357	R3hdm1	97	84.996	Cricetulus_griseus_chok1gshd
ENSUMAG00000005552	R3HDM1	99	88.525	ENSCGRG00000012080	R3hdm1	100	86.063	Cricetulus_griseus_crigri
ENSUMAG00000005552	R3HDM1	88	40.772	ENSCSEG00000008944	r3hdm1	82	64.918	Cynoglossus_semilaevis
ENSUMAG00000005552	R3HDM1	87	60.800	ENSCVAG00000007582	r3hdm1	91	60.800	Cyprinodon_variegatus
ENSUMAG00000005552	R3HDM1	100	92.308	ENSDNOG00000000771	R3HDM1	100	87.715	Dasypus_novemcinctus
ENSUMAG00000005552	R3HDM1	96	84.767	ENSETEG00000013606	R3HDM1	100	80.563	Echinops_telfairi
ENSUMAG00000005552	R3HDM1	61	42.921	ENSEBUG00000014746	arpp21	97	42.705	Eptatretus_burgeri
ENSUMAG00000005552	R3HDM1	100	99.448	ENSEASG00005007392	R3HDM1	100	93.578	Equus_asinus_asinus
ENSUMAG00000005552	R3HDM1	99	99.448	ENSECAG00000019114	R3HDM1	100	93.000	Equus_caballus
ENSUMAG00000005552	R3HDM1	90	90.566	ENSEEUG00000012589	R3HDM1	83	92.453	Erinaceus_europaeus
ENSUMAG00000005552	R3HDM1	92	74.913	ENSELUG00000004909	R3HDM1	95	55.707	Esox_lucius
ENSUMAG00000005552	R3HDM1	91	51.576	ENSELUG00000014413	r3hdm1	87	77.978	Esox_lucius
ENSUMAG00000005552	R3HDM1	100	99.724	ENSFCAG00000027113	R3HDM1	100	97.729	Felis_catus
ENSUMAG00000005552	R3HDM1	92	67.874	ENSFALG00000013731	R3HDM1	93	68.224	Ficedula_albicollis
ENSUMAG00000005552	R3HDM1	100	85.714	ENSFDAG00000016478	R3HDM1	91	97.511	Fukomys_damarensis
ENSUMAG00000005552	R3HDM1	87	56.863	ENSFHEG00000018713	r3hdm1	91	61.600	Fundulus_heteroclitus
ENSUMAG00000005552	R3HDM1	50	80.827	ENSGMOG00000006042	-	74	64.348	Gadus_morhua
ENSUMAG00000005552	R3HDM1	100	71.581	ENSGALG00000012246	R3HDM1	100	85.342	Gallus_gallus
ENSUMAG00000005552	R3HDM1	87	61.867	ENSGAFG00000006203	r3hdm1	95	61.867	Gambusia_affinis
ENSUMAG00000005552	R3HDM1	86	67.949	ENSGACG00000014925	r3hdm1	92	67.949	Gasterosteus_aculeatus
ENSUMAG00000005552	R3HDM1	99	83.380	ENSGAGG00000007840	R3HDM1	100	74.024	Gopherus_agassizii
ENSUMAG00000005552	R3HDM1	100	93.943	ENSGGOG00000008156	R3HDM1	100	93.840	Gorilla_gorilla
ENSUMAG00000005552	R3HDM1	100	85.979	ENSHGLG00000015718	R3HDM1	91	97.285	Heterocephalus_glaber_female
ENSUMAG00000005552	R3HDM1	100	86.042	ENSHGLG00100003184	-	91	97.285	Heterocephalus_glaber_male
ENSUMAG00000005552	R3HDM1	100	73.689	ENSHGLG00100015374	-	100	73.689	Heterocephalus_glaber_male
ENSUMAG00000005552	R3HDM1	87	59.030	ENSHCOG00000013366	r3hdm1	91	59.838	Hippocampus_comes
ENSUMAG00000005552	R3HDM1	87	68.901	ENSIPUG00000001676	R3HDM1	99	59.751	Ictalurus_punctatus
ENSUMAG00000005552	R3HDM1	93	61.399	ENSIPUG00000013629	r3hdm1	100	62.567	Ictalurus_punctatus
ENSUMAG00000005552	R3HDM1	100	91.042	ENSSTOG00000007572	R3HDM1	100	90.481	Ictidomys_tridecemlineatus
ENSUMAG00000005552	R3HDM1	94	85.806	ENSLACG00000005334	R3HDM1	99	70.545	Latimeria_chalumnae
ENSUMAG00000005552	R3HDM1	100	69.734	ENSLOCG00000001641	r3hdm1	100	63.523	Lepisosteus_oculatus
ENSUMAG00000005552	R3HDM1	100	88.018	ENSLAFG00000009065	R3HDM1	100	88.018	Loxodonta_africana
ENSUMAG00000005552	R3HDM1	100	94.148	ENSMFAG00000030331	R3HDM1	100	94.045	Macaca_fascicularis
ENSUMAG00000005552	R3HDM1	100	94.045	ENSMMUG00000009844	R3HDM1	100	93.943	Macaca_mulatta
ENSUMAG00000005552	R3HDM1	100	94.045	ENSMNEG00000027793	R3HDM1	100	93.943	Macaca_nemestrina
ENSUMAG00000005552	R3HDM1	100	94.251	ENSMLEG00000043189	R3HDM1	100	94.148	Mandrillus_leucophaeus
ENSUMAG00000005552	R3HDM1	87	62.198	ENSMAMG00000004532	r3hdm1	91	57.389	Mastacembelus_armatus
ENSUMAG00000005552	R3HDM1	87	61.867	ENSMZEG00005003157	r3hdm1	95	61.867	Maylandia_zebra
ENSUMAG00000005552	R3HDM1	100	75.543	ENSMGAG00000012461	R3HDM1	100	75.453	Meleagris_gallopavo
ENSUMAG00000005552	R3HDM1	100	86.207	ENSMAUG00000010315	R3hdm1	100	86.411	Mesocricetus_auratus
ENSUMAG00000005552	R3HDM1	100	92.923	ENSMICG00000005900	-	100	97.238	Microcebus_murinus
ENSUMAG00000005552	R3HDM1	95	92.849	ENSMICG00000042655	-	100	96.961	Microcebus_murinus
ENSUMAG00000005552	R3HDM1	88	78.708	ENSMODG00000000923	R3HDM1	97	73.549	Monodelphis_domestica
ENSUMAG00000005552	R3HDM1	99	57.816	ENSMALG00000009000	r3hdm1	91	57.816	Monopterus_albus
ENSUMAG00000005552	R3HDM1	100	85.222	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.979	Mus_caroli
ENSUMAG00000005552	R3HDM1	100	85.222	ENSMUSG00000056211	R3hdm1	100	94.979	Mus_musculus
ENSUMAG00000005552	R3HDM1	100	85.432	MGP_PahariEiJ_G0027779	R3hdm1	100	94.979	Mus_pahari
ENSUMAG00000005552	R3HDM1	100	85.222	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.979	Mus_spretus
ENSUMAG00000005552	R3HDM1	100	96.242	ENSMPUG00000002412	R3HDM1	100	94.005	Mustela_putorius_furo
ENSUMAG00000005552	R3HDM1	100	91.734	ENSMLUG00000013824	R3HDM1	100	90.778	Myotis_lucifugus
ENSUMAG00000005552	R3HDM1	100	94.045	ENSNLEG00000008622	R3HDM1	100	93.943	Nomascus_leucogenys
ENSUMAG00000005552	R3HDM1	89	69.121	ENSMEUG00000011784	R3HDM1	100	69.018	Notamacropus_eugenii
ENSUMAG00000005552	R3HDM1	100	86.207	ENSODEG00000008607	R3HDM1	91	97.059	Octodon_degus
ENSUMAG00000005552	R3HDM1	94	66.563	ENSONIG00000012017	r3hdm1	91	66.563	Oreochromis_niloticus
ENSUMAG00000005552	R3HDM1	100	77.958	ENSOANG00000007987	R3HDM1	100	77.958	Ornithorhynchus_anatinus
ENSUMAG00000005552	R3HDM1	89	89.115	ENSOCUG00000017366	R3HDM1	98	89.115	Oryctolagus_cuniculus
ENSUMAG00000005552	R3HDM1	87	60.904	ENSORLG00000004297	r3hdm1	90	60.904	Oryzias_latipes
ENSUMAG00000005552	R3HDM1	88	61.333	ENSORLG00015017355	r3hdm1	91	61.333	Oryzias_latipes_hsok
ENSUMAG00000005552	R3HDM1	100	91.340	ENSOGAG00000003136	R3HDM1	100	90.372	Otolemur_garnettii
ENSUMAG00000005552	R3HDM1	100	92.320	ENSOARG00000010788	R3HDM1	100	90.917	Ovis_aries
ENSUMAG00000005552	R3HDM1	100	94.057	ENSPPAG00000027858	R3HDM1	100	93.955	Pan_paniscus
ENSUMAG00000005552	R3HDM1	100	97.222	ENSPPRG00000002626	R3HDM1	100	99.448	Panthera_pardus
ENSUMAG00000005552	R3HDM1	100	97.222	ENSPTIG00000016581	R3HDM1	100	99.724	Panthera_tigris_altaica
ENSUMAG00000005552	R3HDM1	100	94.057	ENSPTRG00000012494	R3HDM1	100	93.955	Pan_troglodytes
ENSUMAG00000005552	R3HDM1	100	94.251	ENSPANG00000026448	R3HDM1	100	94.148	Papio_anubis
ENSUMAG00000005552	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	95	58.240	Paramormyrops_kingsleyae
ENSUMAG00000005552	R3HDM1	100	74.796	ENSPSIG00000012915	R3HDM1	100	74.705	Pelodiscus_sinensis
ENSUMAG00000005552	R3HDM1	100	85.714	ENSPEMG00000015187	R3hdm1	100	86.411	Peromyscus_maniculatus_bairdii
ENSUMAG00000005552	R3HDM1	100	91.209	ENSPCIG00000002491	R3HDM1	93	89.812	Phascolarctos_cinereus
ENSUMAG00000005552	R3HDM1	87	55.231	ENSPFOG00000015036	r3hdm1	94	55.961	Poecilia_formosa
ENSUMAG00000005552	R3HDM1	87	59.682	ENSPLAG00000018042	r3hdm1	91	59.682	Poecilia_latipinna
ENSUMAG00000005552	R3HDM1	87	59.682	ENSPMEG00000023947	r3hdm1	91	59.682	Poecilia_mexicana
ENSUMAG00000005552	R3HDM1	80	68.285	ENSPREG00000007902	r3hdm1	94	60.317	Poecilia_reticulata
ENSUMAG00000005552	R3HDM1	100	90.538	ENSPPYG00000012815	R3HDM1	100	89.393	Pongo_abelii
ENSUMAG00000005552	R3HDM1	98	83.232	ENSPCAG00000006208	R3HDM1	100	78.344	Procavia_capensis
ENSUMAG00000005552	R3HDM1	100	91.470	ENSPCOG00000012698	R3HDM1	100	91.470	Propithecus_coquereli
ENSUMAG00000005552	R3HDM1	100	82.971	ENSPVAG00000006098	R3HDM1	100	82.880	Pteropus_vampyrus
ENSUMAG00000005552	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	89	74.522	Pygocentrus_nattereri
ENSUMAG00000005552	R3HDM1	87	76.603	ENSPNAG00000005436	R3HDM1	99	61.058	Pygocentrus_nattereri
ENSUMAG00000005552	R3HDM1	60	40.439	ENSPNAG00000004162	arpp21	58	49.354	Pygocentrus_nattereri
ENSUMAG00000005552	R3HDM1	100	84.975	ENSRNOG00000004099	R3hdm1	100	83.774	Rattus_norvegicus
ENSUMAG00000005552	R3HDM1	100	89.919	ENSRBIG00000033317	R3HDM1	100	94.227	Rhinopithecus_bieti
ENSUMAG00000005552	R3HDM1	100	97.790	ENSRROG00000034534	R3HDM1	100	93.949	Rhinopithecus_roxellana
ENSUMAG00000005552	R3HDM1	100	93.634	ENSSBOG00000020389	R3HDM1	100	96.685	Saimiri_boliviensis_boliviensis
ENSUMAG00000005552	R3HDM1	100	84.166	ENSSHAG00000016999	R3HDM1	100	84.072	Sarcophilus_harrisii
ENSUMAG00000005552	R3HDM1	100	58.707	ENSSFOG00015014134	r3hdm1	100	66.010	Scleropages_formosus
ENSUMAG00000005552	R3HDM1	100	54.408	ENSSFOG00015019851	-	96	63.221	Scleropages_formosus
ENSUMAG00000005552	R3HDM1	99	60.270	ENSSMAG00000001669	r3hdm1	99	44.614	Scophthalmus_maximus
ENSUMAG00000005552	R3HDM1	87	62.500	ENSSDUG00000010749	r3hdm1	91	62.500	Seriola_dumerili
ENSUMAG00000005552	R3HDM1	92	68.910	ENSSLDG00000004499	r3hdm1	91	57.213	Seriola_lalandi_dorsalis
ENSUMAG00000005552	R3HDM1	74	78.478	ENSSARG00000000352	-	69	78.478	Sorex_araneus
ENSUMAG00000005552	R3HDM1	100	76.721	ENSSPUG00000004167	R3HDM1	100	76.449	Sphenodon_punctatus
ENSUMAG00000005552	R3HDM1	87	63.200	ENSSPAG00000004648	r3hdm1	91	63.200	Stegastes_partitus
ENSUMAG00000005552	R3HDM1	100	99.171	ENSSSCG00000015692	R3HDM1	100	96.594	Sus_scrofa
ENSUMAG00000005552	R3HDM1	100	70.280	ENSTGUG00000011750	R3HDM1	100	70.370	Taeniopygia_guttata
ENSUMAG00000005552	R3HDM1	87	57.841	ENSTRUG00000011654	r3hdm1	91	57.841	Takifugu_rubripes
ENSUMAG00000005552	R3HDM1	83	46.834	ENSTNIG00000010362	r3hdm1	92	47.097	Tetraodon_nigroviridis
ENSUMAG00000005552	R3HDM1	100	88.670	ENSTTRG00000003935	R3HDM1	100	87.545	Tursiops_truncatus
ENSUMAG00000005552	R3HDM1	66	99.842	ENSUAMG00000024806	R3HDM1	97	95.676	Ursus_americanus
ENSUMAG00000005552	R3HDM1	97	100.000	ENSVPAG00000007333	R3HDM1	93	100.000	Vicugna_pacos
ENSUMAG00000005552	R3HDM1	100	99.724	ENSVVUG00000006457	R3HDM1	100	98.110	Vulpes_vulpes
ENSUMAG00000005552	R3HDM1	89	66.129	ENSXETG00000019330	r3hdm1	100	65.927	Xenopus_tropicalis
ENSUMAG00000005552	R3HDM1	70	50.775	ENSXCOG00000017448	r3hdm1	94	49.547	Xiphophorus_couchianus
ENSUMAG00000005552	R3HDM1	87	61.600	ENSXMAG00000007885	r3hdm1	82	67.961	Xiphophorus_maculatus