EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000005960 (Gene tree)
Gene ID: 103676629
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 405071 bases
Position: chrKK498719.1:9744960-10150030
Accession: 103676629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000007751	TUDOR	PF00567.24	5.1e-28	1	1
ENSUMAP00000007751	SNase	PF00565.17	2.3e-69	1	5
ENSUMAP00000007751	SNase	PF00565.17	2.3e-69	2	5
ENSUMAP00000007751	SNase	PF00565.17	2.3e-69	3	5
ENSUMAP00000007751	SNase	PF00565.17	2.3e-69	4	5
ENSUMAP00000007751	SNase	PF00565.17	2.3e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000009284	SND1-201	3288	XM_008705837	ENSUMAP00000007751	910 (aa)	XP_008704059	UPI0004E01F5A

Gene Model

Click here to download ENSUMAG00000005960's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000005960's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000005960	SND1	100	98.791	ENSG00000197157	SND1	100	98.791	Homo_sapiens
ENSUMAG00000005960	SND1	100	83.882	ENSAPOG00000017599	snd1	100	83.882	Acanthochromis_polyacanthus
ENSUMAG00000005960	SND1	100	99.342	ENSAMEG00000004664	SND1	94	99.342	Ailuropoda_melanoleuca
ENSUMAG00000005960	SND1	98	82.083	ENSACIG00000003551	snd1	100	81.010	Amphilophus_citrinellus
ENSUMAG00000005960	SND1	100	83.662	ENSAOCG00000014166	snd1	100	83.662	Amphiprion_ocellaris
ENSUMAG00000005960	SND1	100	83.662	ENSAPEG00000007067	snd1	100	83.662	Amphiprion_percula
ENSUMAG00000005960	SND1	98	83.017	ENSATEG00000018475	snd1	89	83.017	Anabas_testudineus
ENSUMAG00000005960	SND1	100	99.011	ENSANAG00000034463	SND1	100	99.011	Aotus_nancymaae
ENSUMAG00000005960	SND1	100	83.333	ENSACLG00000022897	snd1	100	83.333	Astatotilapia_calliptera
ENSUMAG00000005960	SND1	99	84.378	ENSAMXG00000016318	snd1	99	84.378	Astyanax_mexicanus
ENSUMAG00000005960	SND1	100	98.571	ENSBTAG00000010692	SND1	100	98.571	Bos_taurus
ENSUMAG00000005960	SND1	97	46.645	WBGene00006626	tsn-1	98	47.085	Caenorhabditis_elegans
ENSUMAG00000005960	SND1	100	98.791	ENSCJAG00000017668	SND1	100	98.791	Callithrix_jacchus
ENSUMAG00000005960	SND1	100	99.451	ENSCAFG00000001700	SND1	100	99.451	Canis_familiaris
ENSUMAG00000005960	SND1	100	99.451	ENSCAFG00020021639	SND1	100	99.451	Canis_lupus_dingo
ENSUMAG00000005960	SND1	100	98.901	ENSCHIG00000023390	SND1	100	98.901	Capra_hircus
ENSUMAG00000005960	SND1	73	99.296	ENSTSYG00000004979	SND1	96	99.296	Carlito_syrichta
ENSUMAG00000005960	SND1	99	84.889	ENSCAPG00000010677	SND1	98	84.889	Cavia_aperea
ENSUMAG00000005960	SND1	100	98.022	ENSCPOG00000006251	SND1	100	98.022	Cavia_porcellus
ENSUMAG00000005960	SND1	100	99.121	ENSCCAG00000036847	SND1	100	99.121	Cebus_capucinus
ENSUMAG00000005960	SND1	100	99.011	ENSCATG00000035214	SND1	100	99.011	Cercocebus_atys
ENSUMAG00000005960	SND1	100	98.022	ENSCLAG00000011796	SND1	100	98.022	Chinchilla_lanigera
ENSUMAG00000005960	SND1	100	99.011	ENSCSAG00000010182	SND1	100	99.011	Chlorocebus_sabaeus
ENSUMAG00000005960	SND1	77	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSUMAG00000005960	SND1	100	91.868	ENSCPBG00000018094	SND1	100	91.868	Chrysemys_picta_bellii
ENSUMAG00000005960	SND1	98	57.080	ENSCING00000000524	-	98	57.080	Ciona_intestinalis
ENSUMAG00000005960	SND1	99	57.751	ENSCSAVG00000008807	-	99	57.751	Ciona_savignyi
ENSUMAG00000005960	SND1	100	99.011	ENSCANG00000035119	SND1	100	99.011	Colobus_angolensis_palliatus
ENSUMAG00000005960	SND1	100	97.143	ENSCGRG00001022514	Snd1	100	97.143	Cricetulus_griseus_chok1gshd
ENSUMAG00000005960	SND1	97	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSUMAG00000005960	SND1	98	84.228	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSUMAG00000005960	SND1	100	83.991	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSUMAG00000005960	SND1	100	84.666	ENSDARG00000006766	snd1	99	86.316	Danio_rerio
ENSUMAG00000005960	SND1	97	96.167	ENSDNOG00000006795	SND1	100	96.167	Dasypus_novemcinctus
ENSUMAG00000005960	SND1	100	98.462	ENSDORG00000000336	Snd1	100	98.462	Dipodomys_ordii
ENSUMAG00000005960	SND1	98	50.703	FBgn0035121	Tudor-SN	99	50.212	Drosophila_melanogaster
ENSUMAG00000005960	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSUMAG00000005960	SND1	60	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSUMAG00000005960	SND1	100	97.408	ENSEASG00005008513	SND1	100	97.408	Equus_asinus_asinus
ENSUMAG00000005960	SND1	100	99.011	ENSECAG00000011451	SND1	100	99.011	Equus_caballus
ENSUMAG00000005960	SND1	100	86.813	ENSEEUG00000014737	SND1	100	86.813	Erinaceus_europaeus
ENSUMAG00000005960	SND1	99	82.237	ENSELUG00000001805	snd1	96	82.237	Esox_lucius
ENSUMAG00000005960	SND1	100	99.341	ENSFCAG00000008289	SND1	100	99.341	Felis_catus
ENSUMAG00000005960	SND1	100	98.132	ENSFDAG00000015881	SND1	100	98.132	Fukomys_damarensis
ENSUMAG00000005960	SND1	99	82.201	ENSFHEG00000004093	snd1	99	83.927	Fundulus_heteroclitus
ENSUMAG00000005960	SND1	64	74.576	ENSGMOG00000018932	snd1	66	74.576	Gadus_morhua
ENSUMAG00000005960	SND1	100	84.211	ENSGAFG00000008421	snd1	100	84.211	Gambusia_affinis
ENSUMAG00000005960	SND1	100	53.529	ENSGACG00000019793	snd1	100	53.529	Gasterosteus_aculeatus
ENSUMAG00000005960	SND1	100	99.011	ENSGGOG00000009614	SND1	100	99.011	Gorilla_gorilla
ENSUMAG00000005960	SND1	99	83.480	ENSHBUG00000019135	snd1	99	83.480	Haplochromis_burtoni
ENSUMAG00000005960	SND1	100	97.912	ENSHGLG00000003618	SND1	100	97.912	Heterocephalus_glaber_female
ENSUMAG00000005960	SND1	99	97.459	ENSHGLG00100012449	SND1	100	97.459	Heterocephalus_glaber_male
ENSUMAG00000005960	SND1	100	82.895	ENSHCOG00000005266	snd1	100	82.895	Hippocampus_comes
ENSUMAG00000005960	SND1	100	82.932	ENSIPUG00000013279	snd1	100	82.932	Ictalurus_punctatus
ENSUMAG00000005960	SND1	100	98.462	ENSSTOG00000002140	SND1	100	98.462	Ictidomys_tridecemlineatus
ENSUMAG00000005960	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSUMAG00000005960	SND1	100	83.991	ENSKMAG00000016997	snd1	100	83.991	Kryptolebias_marmoratus
ENSUMAG00000005960	SND1	100	84.732	ENSLBEG00000013563	snd1	100	82.456	Labrus_bergylta
ENSUMAG00000005960	SND1	99	85.557	ENSLOCG00000015537	snd1	100	84.799	Lepisosteus_oculatus
ENSUMAG00000005960	SND1	100	98.242	ENSLAFG00000009696	SND1	100	98.242	Loxodonta_africana
ENSUMAG00000005960	SND1	100	99.011	ENSMFAG00000038114	SND1	100	99.011	Macaca_fascicularis
ENSUMAG00000005960	SND1	100	99.011	ENSMMUG00000015432	SND1	100	99.011	Macaca_mulatta
ENSUMAG00000005960	SND1	100	99.011	ENSMNEG00000039808	SND1	100	99.209	Macaca_nemestrina
ENSUMAG00000005960	SND1	100	99.121	ENSMLEG00000029040	SND1	100	99.322	Mandrillus_leucophaeus
ENSUMAG00000005960	SND1	100	83.553	ENSMAMG00000011739	snd1	100	83.553	Mastacembelus_armatus
ENSUMAG00000005960	SND1	100	83.333	ENSMZEG00005005681	snd1	100	83.333	Maylandia_zebra
ENSUMAG00000005960	SND1	100	98.791	ENSMICG00000000097	SND1	100	98.791	Microcebus_murinus
ENSUMAG00000005960	SND1	100	98.022	ENSMOCG00000005040	Snd1	100	98.022	Microtus_ochrogaster
ENSUMAG00000005960	SND1	100	83.443	ENSMMOG00000001795	snd1	100	83.443	Mola_mola
ENSUMAG00000005960	SND1	99	95.764	ENSMODG00000015182	SND1	100	95.714	Monodelphis_domestica
ENSUMAG00000005960	SND1	100	83.224	ENSMALG00000012071	snd1	100	83.224	Monopterus_albus
ENSUMAG00000005960	SND1	100	97.582	MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	Mus_caroli
ENSUMAG00000005960	SND1	100	97.363	ENSMUSG00000001424	Snd1	100	97.363	Mus_musculus
ENSUMAG00000005960	SND1	100	97.582	MGP_PahariEiJ_G0021917	Snd1	100	98.145	Mus_pahari
ENSUMAG00000005960	SND1	100	97.582	MGP_SPRETEiJ_G0029159	Snd1	100	97.582	Mus_spretus
ENSUMAG00000005960	SND1	100	98.681	ENSMPUG00000006545	SND1	100	98.681	Mustela_putorius_furo
ENSUMAG00000005960	SND1	97	97.318	ENSMLUG00000017130	SND1	99	97.318	Myotis_lucifugus
ENSUMAG00000005960	SND1	100	97.802	ENSNGAG00000011186	Snd1	100	97.802	Nannospalax_galili
ENSUMAG00000005960	SND1	100	83.224	ENSNBRG00000006681	snd1	100	83.224	Neolamprologus_brichardi
ENSUMAG00000005960	SND1	100	98.901	ENSNLEG00000012263	SND1	100	99.209	Nomascus_leucogenys
ENSUMAG00000005960	SND1	91	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSUMAG00000005960	SND1	100	98.462	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSUMAG00000005960	SND1	100	83.224	ENSONIG00000011481	snd1	97	83.224	Oreochromis_niloticus
ENSUMAG00000005960	SND1	98	94.482	ENSOANG00000000817	SND1	99	93.282	Ornithorhynchus_anatinus
ENSUMAG00000005960	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSUMAG00000005960	SND1	98	83.911	ENSORLG00000015201	snd1	99	83.742	Oryzias_latipes
ENSUMAG00000005960	SND1	98	84.022	ENSORLG00020013991	snd1	99	83.853	Oryzias_latipes_hni
ENSUMAG00000005960	SND1	98	84.022	ENSORLG00015012436	snd1	99	83.853	Oryzias_latipes_hsok
ENSUMAG00000005960	SND1	100	83.114	ENSOMEG00000006406	snd1	99	83.114	Oryzias_melastigma
ENSUMAG00000005960	SND1	100	98.575	ENSOGAG00000013356	SND1	94	98.575	Otolemur_garnettii
ENSUMAG00000005960	SND1	97	96.271	ENSOARG00000002149	SND1	100	96.271	Ovis_aries
ENSUMAG00000005960	SND1	100	98.901	ENSPPAG00000042947	SND1	100	98.901	Pan_paniscus
ENSUMAG00000005960	SND1	100	99.341	ENSPPRG00000004494	SND1	100	99.341	Panthera_pardus
ENSUMAG00000005960	SND1	100	99.231	ENSPTIG00000014214	SND1	100	99.231	Panthera_tigris_altaica
ENSUMAG00000005960	SND1	100	98.901	ENSPTRG00000023911	SND1	100	98.901	Pan_troglodytes
ENSUMAG00000005960	SND1	97	99.208	ENSPANG00000011997	SND1	99	99.208	Papio_anubis
ENSUMAG00000005960	SND1	99	81.588	ENSPKIG00000023494	snd1	100	80.849	Paramormyrops_kingsleyae
ENSUMAG00000005960	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSUMAG00000005960	SND1	100	97.912	ENSPEMG00000010240	Snd1	100	97.912	Peromyscus_maniculatus_bairdii
ENSUMAG00000005960	SND1	97	73.672	ENSPMAG00000007915	-	99	73.672	Petromyzon_marinus
ENSUMAG00000005960	SND1	100	96.154	ENSPCIG00000011561	SND1	100	96.154	Phascolarctos_cinereus
ENSUMAG00000005960	SND1	100	83.662	ENSPFOG00000001557	snd1	100	83.662	Poecilia_formosa
ENSUMAG00000005960	SND1	100	83.662	ENSPLAG00000018459	snd1	97	83.662	Poecilia_latipinna
ENSUMAG00000005960	SND1	100	84.101	ENSPMEG00000006803	snd1	100	84.101	Poecilia_mexicana
ENSUMAG00000005960	SND1	100	83.991	ENSPREG00000002189	snd1	100	83.991	Poecilia_reticulata
ENSUMAG00000005960	SND1	93	99.007	ENSPPYG00000017972	SND1	100	99.007	Pongo_abelii
ENSUMAG00000005960	SND1	100	86.484	ENSPCAG00000011305	SND1	100	86.484	Procavia_capensis
ENSUMAG00000005960	SND1	100	98.791	ENSPCOG00000026791	SND1	100	98.983	Propithecus_coquereli
ENSUMAG00000005960	SND1	100	96.923	ENSPVAG00000013945	SND1	100	96.923	Pteropus_vampyrus
ENSUMAG00000005960	SND1	100	83.333	ENSPNYG00000000932	snd1	100	83.333	Pundamilia_nyererei
ENSUMAG00000005960	SND1	100	83.589	ENSPNAG00000001206	snd1	100	83.589	Pygocentrus_nattereri
ENSUMAG00000005960	SND1	99	97.247	ENSRNOG00000031173	Snd1	100	96.271	Rattus_norvegicus
ENSUMAG00000005960	SND1	73	99.436	ENSRBIG00000027782	-	93	99.620	Rhinopithecus_bieti
ENSUMAG00000005960	SND1	100	99.011	ENSRROG00000033020	SND1	100	99.011	Rhinopithecus_roxellana
ENSUMAG00000005960	SND1	100	99.011	ENSSBOG00000032461	SND1	100	99.011	Saimiri_boliviensis_boliviensis
ENSUMAG00000005960	SND1	98	93.131	ENSSHAG00000015359	SND1	100	93.131	Sarcophilus_harrisii
ENSUMAG00000005960	SND1	100	82.372	ENSSFOG00015001103	snd1	100	82.372	Scleropages_formosus
ENSUMAG00000005960	SND1	98	83.669	ENSSMAG00000001932	snd1	95	82.566	Scophthalmus_maximus
ENSUMAG00000005960	SND1	100	83.662	ENSSDUG00000002699	snd1	94	83.662	Seriola_dumerili
ENSUMAG00000005960	SND1	100	76.425	ENSSLDG00000001950	snd1	100	76.425	Seriola_lalandi_dorsalis
ENSUMAG00000005960	SND1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSUMAG00000005960	SND1	73	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSUMAG00000005960	SND1	75	85.110	ENSSPAG00000021398	snd1	99	85.110	Stegastes_partitus
ENSUMAG00000005960	SND1	100	98.791	ENSSSCG00000016590	SND1	100	98.791	Sus_scrofa
ENSUMAG00000005960	SND1	100	82.675	ENSTRUG00000014067	snd1	100	82.675	Takifugu_rubripes
ENSUMAG00000005960	SND1	100	83.224	ENSTNIG00000011019	snd1	98	85.762	Tetraodon_nigroviridis
ENSUMAG00000005960	SND1	93	93.160	ENSTBEG00000003999	SND1	100	93.160	Tupaia_belangeri
ENSUMAG00000005960	SND1	100	94.615	ENSTTRG00000006059	SND1	100	94.615	Tursiops_truncatus
ENSUMAG00000005960	SND1	91	100.000	ENSUAMG00000005604	-	93	100.000	Ursus_americanus
ENSUMAG00000005960	SND1	71	90.649	ENSUAMG00000002820	-	90	90.649	Ursus_americanus
ENSUMAG00000005960	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSUMAG00000005960	SND1	100	99.231	ENSVVUG00000007226	SND1	100	99.231	Vulpes_vulpes
ENSUMAG00000005960	SND1	97	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSUMAG00000005960	SND1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSUMAG00000005960	SND1	100	84.211	ENSXMAG00000011469	snd1	100	84.211	Xiphophorus_maculatus