EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000006177 (Gene tree)
Gene ID: 103671444
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein F-like
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 258 bases
Position: chrKK498653.1:37246409-37246666
Accession: 103671444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000008059	LSM	PF01423.22	1.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000009642	-	258	XM_008700057	ENSUMAP00000008059	85 (aa)	XP_008698279	UPI0004DFF12D

Gene Model

Click here to download ENSUMAG00000006177's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000006177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000006177	-	88	89.333	ENSUMAG00000003528	-	87	89.333
ENSUMAG00000006177	-	73	38.710	ENSUMAG00000015727	LSM6	51	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000006177	-	88	89.333	ENSG00000139343	SNRPF	87	89.333	Homo_sapiens
ENSUMAG00000006177	-	87	86.486	ENSAPOG00000003377	snrpf	58	86.486	Acanthochromis_polyacanthus
ENSUMAG00000006177	-	89	94.737	ENSAMEG00000018718	-	87	94.667	Ailuropoda_melanoleuca
ENSUMAG00000006177	-	87	89.189	ENSAMEG00000002166	-	87	89.189	Ailuropoda_melanoleuca
ENSUMAG00000006177	-	86	86.301	ENSACIG00000013216	snrpf	86	86.301	Amphilophus_citrinellus
ENSUMAG00000006177	-	86	86.301	ENSAOCG00000015108	snrpf	86	86.301	Amphiprion_ocellaris
ENSUMAG00000006177	-	86	86.301	ENSAPEG00000022022	snrpf	86	86.301	Amphiprion_percula
ENSUMAG00000006177	-	86	86.301	ENSATEG00000022625	snrpf	78	86.301	Anabas_testudineus
ENSUMAG00000006177	-	87	87.838	ENSACAG00000014073	SNRPF	85	87.838	Anolis_carolinensis
ENSUMAG00000006177	-	87	79.730	ENSANAG00000020297	-	68	79.730	Aotus_nancymaae
ENSUMAG00000006177	-	88	61.333	ENSANAG00000025860	-	85	61.333	Aotus_nancymaae
ENSUMAG00000006177	-	88	89.333	ENSANAG00000032845	SNRPF	87	89.333	Aotus_nancymaae
ENSUMAG00000006177	-	86	86.301	ENSACLG00000016066	snrpf	86	86.301	Astatotilapia_calliptera
ENSUMAG00000006177	-	88	84.000	ENSAMXG00000007421	snrpf	87	84.000	Astyanax_mexicanus
ENSUMAG00000006177	-	92	82.051	ENSBTAG00000050012	-	93	82.667	Bos_taurus
ENSUMAG00000006177	-	88	89.333	ENSBTAG00000016271	SNRPF	87	89.333	Bos_taurus
ENSUMAG00000006177	-	89	64.474	WBGene00004918	snr-5	84	66.197	Caenorhabditis_elegans
ENSUMAG00000006177	-	88	89.333	ENSCJAG00000002705	-	87	89.333	Callithrix_jacchus
ENSUMAG00000006177	-	86	80.822	ENSCAFG00000031151	-	85	83.562	Canis_familiaris
ENSUMAG00000006177	-	88	89.333	ENSCAFG00000006395	-	68	89.333	Canis_familiaris
ENSUMAG00000006177	-	86	80.822	ENSCAFG00020010823	-	85	83.562	Canis_lupus_dingo
ENSUMAG00000006177	-	88	82.667	ENSCAFG00020013161	-	74	87.143	Canis_lupus_dingo
ENSUMAG00000006177	-	88	76.000	ENSTSYG00000030635	-	87	76.000	Carlito_syrichta
ENSUMAG00000006177	-	88	84.211	ENSTSYG00000036502	-	87	84.211	Carlito_syrichta
ENSUMAG00000006177	-	92	85.897	ENSTSYG00000031636	-	61	84.932	Carlito_syrichta
ENSUMAG00000006177	-	87	89.189	ENSCAPG00000007242	SNRPF	87	89.189	Cavia_aperea
ENSUMAG00000006177	-	88	89.333	ENSCPOG00000013898	SNRPF	87	89.333	Cavia_porcellus
ENSUMAG00000006177	-	88	89.333	ENSCCAG00000037378	-	87	89.333	Cebus_capucinus
ENSUMAG00000006177	-	86	89.041	ENSCCAG00000017356	-	87	89.333	Cebus_capucinus
ENSUMAG00000006177	-	100	75.581	ENSCCAG00000033627	-	59	80.000	Cebus_capucinus
ENSUMAG00000006177	-	88	89.333	ENSCLAG00000007200	SNRPF	87	89.333	Chinchilla_lanigera
ENSUMAG00000006177	-	88	89.333	ENSCSAG00000003602	-	61	89.333	Chlorocebus_sabaeus
ENSUMAG00000006177	-	75	89.062	ENSCHOG00000009392	SNRPF	100	89.062	Choloepus_hoffmanni
ENSUMAG00000006177	-	100	76.471	ENSCPBG00000001985	-	89	80.000	Chrysemys_picta_bellii
ENSUMAG00000006177	-	99	82.143	ENSCPBG00000024287	-	60	85.135	Chrysemys_picta_bellii
ENSUMAG00000006177	-	100	76.744	ENSCPBG00000026463	-	87	80.000	Chrysemys_picta_bellii
ENSUMAG00000006177	-	88	81.333	ENSCPBG00000006227	-	87	81.333	Chrysemys_picta_bellii
ENSUMAG00000006177	-	99	76.471	ENSCSAVG00000007498	-	84	79.730	Ciona_savignyi
ENSUMAG00000006177	-	88	89.333	ENSCGRG00001017100	-	87	89.333	Cricetulus_griseus_chok1gshd
ENSUMAG00000006177	-	88	81.333	ENSCGRG00001008965	-	58	81.333	Cricetulus_griseus_chok1gshd
ENSUMAG00000006177	-	94	81.250	ENSCGRG00000018878	-	94	81.333	Cricetulus_griseus_crigri
ENSUMAG00000006177	-	88	89.333	ENSCGRG00000000336	-	87	89.333	Cricetulus_griseus_crigri
ENSUMAG00000006177	-	88	85.333	ENSCSEG00000004748	snrpf	87	85.333	Cynoglossus_semilaevis
ENSUMAG00000006177	-	87	86.486	ENSCVAG00000000397	snrpf	59	86.486	Cyprinodon_variegatus
ENSUMAG00000006177	-	88	84.416	ENSDARG00000105037	snrpf	88	84.416	Danio_rerio
ENSUMAG00000006177	-	88	78.667	ENSDNOG00000049373	-	65	78.667	Dasypus_novemcinctus
ENSUMAG00000006177	-	88	88.000	ENSDNOG00000048989	-	67	88.000	Dasypus_novemcinctus
ENSUMAG00000006177	-	69	86.441	ENSDORG00000029740	-	72	86.441	Dipodomys_ordii
ENSUMAG00000006177	-	85	77.778	ENSDORG00000025351	-	100	77.778	Dipodomys_ordii
ENSUMAG00000006177	-	94	71.605	FBgn0000426	SmF	81	74.648	Drosophila_melanogaster
ENSUMAG00000006177	-	88	89.333	ENSETEG00000001558	-	87	89.333	Echinops_telfairi
ENSUMAG00000006177	-	89	72.727	ENSEBUG00000001793	-	72	79.104	Eptatretus_burgeri
ENSUMAG00000006177	-	88	89.333	ENSECAG00000019817	SNRPF	61	89.333	Equus_caballus
ENSUMAG00000006177	-	87	89.189	ENSEEUG00000013509	SNRPF	87	89.189	Erinaceus_europaeus
ENSUMAG00000006177	-	88	84.000	ENSELUG00000003121	RUXF	87	84.000	Esox_lucius
ENSUMAG00000006177	-	99	81.176	ENSELUG00000007737	RUXF	86	82.667	Esox_lucius
ENSUMAG00000006177	-	88	89.333	ENSFCAG00000029966	-	87	89.333	Felis_catus
ENSUMAG00000006177	-	88	68.000	ENSFCAG00000021942	-	87	68.000	Felis_catus
ENSUMAG00000006177	-	98	67.857	ENSFCAG00000031148	-	69	68.000	Felis_catus
ENSUMAG00000006177	-	87	89.189	ENSFALG00000010799	SNRPF	86	89.189	Ficedula_albicollis
ENSUMAG00000006177	-	88	89.333	ENSFDAG00000002831	-	87	89.333	Fukomys_damarensis
ENSUMAG00000006177	-	87	86.486	ENSFHEG00000003240	snrpf	65	86.486	Fundulus_heteroclitus
ENSUMAG00000006177	-	87	86.486	ENSGMOG00000007741	snrpf	87	86.486	Gadus_morhua
ENSUMAG00000006177	-	88	89.333	ENSGALG00000011409	SNRPF	87	89.333	Gallus_gallus
ENSUMAG00000006177	-	86	86.301	ENSGAFG00000016187	snrpf	84	86.301	Gambusia_affinis
ENSUMAG00000006177	-	87	85.135	ENSGACG00000020055	snrpf	87	85.135	Gasterosteus_aculeatus
ENSUMAG00000006177	-	81	76.812	ENSGAGG00000014132	-	83	76.812	Gopherus_agassizii
ENSUMAG00000006177	-	73	85.484	ENSGAGG00000020974	-	54	82.812	Gopherus_agassizii
ENSUMAG00000006177	-	86	84.932	ENSGAGG00000012945	-	69	88.000	Gopherus_agassizii
ENSUMAG00000006177	-	69	81.356	ENSGAGG00000011163	-	86	87.755	Gopherus_agassizii
ENSUMAG00000006177	-	98	75.904	ENSGAGG00000022991	-	86	79.452	Gopherus_agassizii
ENSUMAG00000006177	-	88	89.333	ENSGGOG00000001127	-	87	89.333	Gorilla_gorilla
ENSUMAG00000006177	-	98	72.619	ENSGGOG00000039936	-	83	73.333	Gorilla_gorilla
ENSUMAG00000006177	-	96	67.073	ENSGGOG00000039564	-	90	68.000	Gorilla_gorilla
ENSUMAG00000006177	-	88	89.333	ENSHGLG00000021172	-	87	89.333	Heterocephalus_glaber_female
ENSUMAG00000006177	-	88	89.333	ENSHGLG00000009108	SNRPF	87	89.333	Heterocephalus_glaber_female
ENSUMAG00000006177	-	88	89.333	ENSHGLG00100019596	-	87	89.333	Heterocephalus_glaber_male
ENSUMAG00000006177	-	87	89.189	ENSHGLG00100008103	-	87	89.189	Heterocephalus_glaber_male
ENSUMAG00000006177	-	75	76.056	ENSHCOG00000018663	snrpf	55	76.056	Hippocampus_comes
ENSUMAG00000006177	-	88	86.667	ENSIPUG00000018994	snrpf	87	86.667	Ictalurus_punctatus
ENSUMAG00000006177	-	88	89.333	ENSSTOG00000010434	-	87	89.333	Ictidomys_tridecemlineatus
ENSUMAG00000006177	-	88	89.333	ENSJJAG00000011272	-	87	89.333	Jaculus_jaculus
ENSUMAG00000006177	-	100	72.941	ENSJJAG00000004558	-	89	73.333	Jaculus_jaculus
ENSUMAG00000006177	-	100	74.118	ENSJJAG00000010502	-	89	77.333	Jaculus_jaculus
ENSUMAG00000006177	-	78	83.333	ENSJJAG00000004828	-	86	87.500	Jaculus_jaculus
ENSUMAG00000006177	-	88	85.333	ENSKMAG00000013566	snrpf	87	85.333	Kryptolebias_marmoratus
ENSUMAG00000006177	-	88	86.667	ENSLBEG00000008800	snrpf	87	86.667	Labrus_bergylta
ENSUMAG00000006177	-	88	88.000	ENSLACG00000002456	-	64	88.000	Latimeria_chalumnae
ENSUMAG00000006177	-	88	85.333	ENSLOCG00000015744	snrpf	87	85.333	Lepisosteus_oculatus
ENSUMAG00000006177	-	87	89.189	ENSLAFG00000017426	SNRPF	86	89.189	Loxodonta_africana
ENSUMAG00000006177	-	86	86.301	ENSMAMG00000016593	snrpf	86	86.301	Mastacembelus_armatus
ENSUMAG00000006177	-	86	86.301	ENSMZEG00005014701	snrpf	86	86.301	Maylandia_zebra
ENSUMAG00000006177	-	86	89.041	ENSMGAG00000011453	-	66	89.041	Meleagris_gallopavo
ENSUMAG00000006177	-	74	88.889	ENSMAUG00000019737	-	85	88.889	Mesocricetus_auratus
ENSUMAG00000006177	-	71	83.333	ENSMAUG00000010289	-	66	90.000	Mesocricetus_auratus
ENSUMAG00000006177	-	74	88.889	ENSMAUG00000016909	-	85	88.889	Mesocricetus_auratus
ENSUMAG00000006177	-	88	84.000	ENSMAUG00000008799	-	87	84.000	Mesocricetus_auratus
ENSUMAG00000006177	-	88	82.667	ENSMICG00000030494	-	60	82.667	Microcebus_murinus
ENSUMAG00000006177	-	88	89.333	ENSMICG00000012153	-	87	89.333	Microcebus_murinus
ENSUMAG00000006177	-	88	74.667	ENSMOCG00000022166	-	82	74.667	Microtus_ochrogaster
ENSUMAG00000006177	-	88	89.333	ENSMOCG00000020437	Snrpf	87	89.333	Microtus_ochrogaster
ENSUMAG00000006177	-	80	77.941	ENSMOCG00000020220	-	87	77.941	Microtus_ochrogaster
ENSUMAG00000006177	-	87	85.135	ENSMMOG00000007127	snrpf	87	85.135	Mola_mola
ENSUMAG00000006177	-	88	89.333	ENSMODG00000008091	SNRPF	66	89.333	Monodelphis_domestica
ENSUMAG00000006177	-	86	86.301	ENSMALG00000012328	snrpf	86	86.301	Monopterus_albus
ENSUMAG00000006177	-	88	89.333	MGP_CAROLIEiJ_G0015735	-	87	89.333	Mus_caroli
ENSUMAG00000006177	-	88	89.333	ENSMUSG00000020018	Snrpf	87	89.333	Mus_musculus
ENSUMAG00000006177	-	88	89.333	MGP_PahariEiJ_G0031350	Snrpf	87	89.333	Mus_pahari
ENSUMAG00000006177	-	88	89.333	MGP_SPRETEiJ_G0016553	Snrpf	87	89.333	Mus_spretus
ENSUMAG00000006177	-	88	89.333	ENSMPUG00000007176	-	67	89.333	Mustela_putorius_furo
ENSUMAG00000006177	-	87	89.189	ENSMLUG00000013577	-	87	89.189	Myotis_lucifugus
ENSUMAG00000006177	-	88	89.333	ENSMLUG00000027932	-	71	89.333	Myotis_lucifugus
ENSUMAG00000006177	-	88	89.333	ENSMLUG00000029201	-	71	89.333	Myotis_lucifugus
ENSUMAG00000006177	-	88	89.333	ENSMLUG00000026149	-	71	89.333	Myotis_lucifugus
ENSUMAG00000006177	-	100	69.767	ENSMLUG00000026269	-	71	70.667	Myotis_lucifugus
ENSUMAG00000006177	-	88	89.333	ENSNGAG00000024292	-	87	89.333	Nannospalax_galili
ENSUMAG00000006177	-	74	77.778	ENSNGAG00000005851	-	71	78.333	Nannospalax_galili
ENSUMAG00000006177	-	87	86.486	ENSNBRG00000011682	snrpf	76	86.486	Neolamprologus_brichardi
ENSUMAG00000006177	-	87	63.514	ENSMEUG00000000671	SNRPF	87	63.514	Notamacropus_eugenii
ENSUMAG00000006177	-	88	89.333	ENSODEG00000010328	-	87	89.333	Octodon_degus
ENSUMAG00000006177	-	88	88.000	ENSOCUG00000010925	SNRPF	66	88.000	Oryctolagus_cuniculus
ENSUMAG00000006177	-	87	83.784	ENSORLG00020008216	snrpf	87	83.784	Oryzias_latipes_hni
ENSUMAG00000006177	-	87	83.784	ENSORLG00015007418	snrpf	87	83.784	Oryzias_latipes_hsok
ENSUMAG00000006177	-	86	84.932	ENSOMEG00000003018	snrpf	86	84.932	Oryzias_melastigma
ENSUMAG00000006177	-	88	88.000	ENSOGAG00000030323	-	87	88.000	Otolemur_garnettii
ENSUMAG00000006177	-	88	89.333	ENSOARG00000011853	-	65	89.333	Ovis_aries
ENSUMAG00000006177	-	96	65.854	ENSPPAG00000037479	-	91	66.667	Pan_paniscus
ENSUMAG00000006177	-	98	72.619	ENSPPAG00000037544	-	83	73.333	Pan_paniscus
ENSUMAG00000006177	-	94	71.250	ENSPPRG00000007449	-	77	69.333	Panthera_pardus
ENSUMAG00000006177	-	88	89.333	ENSPPRG00000005875	-	87	89.333	Panthera_pardus
ENSUMAG00000006177	-	98	69.048	ENSPTIG00000005117	-	89	69.333	Panthera_tigris_altaica
ENSUMAG00000006177	-	88	89.333	ENSPTIG00000007520	SNRPF	87	89.333	Panthera_tigris_altaica
ENSUMAG00000006177	-	98	72.619	ENSPTRG00000043814	-	83	73.333	Pan_troglodytes
ENSUMAG00000006177	-	96	65.854	ENSPTRG00000047717	-	91	66.667	Pan_troglodytes
ENSUMAG00000006177	-	87	86.486	ENSPKIG00000014784	snrpf	81	86.486	Paramormyrops_kingsleyae
ENSUMAG00000006177	-	87	89.189	ENSPSIG00000016462	SNRPF	86	89.189	Pelodiscus_sinensis
ENSUMAG00000006177	-	87	85.135	ENSPMGG00000023548	snrpf	87	85.135	Periophthalmus_magnuspinnatus
ENSUMAG00000006177	-	88	89.333	ENSPEMG00000023326	Snrpf	87	89.333	Peromyscus_maniculatus_bairdii
ENSUMAG00000006177	-	86	86.301	ENSPLAG00000023932	snrpf	86	86.301	Poecilia_latipinna
ENSUMAG00000006177	-	86	86.301	ENSPMEG00000003377	snrpf	86	86.301	Poecilia_mexicana
ENSUMAG00000006177	-	88	86.842	ENSPREG00000022635	snrpf	87	86.842	Poecilia_reticulata
ENSUMAG00000006177	-	88	89.333	ENSPPYG00000004847	-	87	89.333	Pongo_abelii
ENSUMAG00000006177	-	88	89.333	ENSPCOG00000023833	-	87	89.333	Propithecus_coquereli
ENSUMAG00000006177	-	88	89.333	ENSPVAG00000009036	SNRPF	87	89.333	Pteropus_vampyrus
ENSUMAG00000006177	-	86	86.301	ENSPNYG00000021712	snrpf	86	86.301	Pundamilia_nyererei
ENSUMAG00000006177	-	86	84.932	ENSPNAG00000019117	snrpf	86	84.932	Pygocentrus_nattereri
ENSUMAG00000006177	-	88	89.333	ENSRNOG00000005556	Snrpf	87	89.333	Rattus_norvegicus
ENSUMAG00000006177	-	88	86.667	ENSRBIG00000030414	-	87	86.667	Rhinopithecus_bieti
ENSUMAG00000006177	-	88	86.667	ENSRROG00000021975	-	87	86.667	Rhinopithecus_roxellana
ENSUMAG00000006177	-	81	51.429	YPR182W	SMX3	81	51.429	Saccharomyces_cerevisiae
ENSUMAG00000006177	-	88	89.333	ENSSBOG00000012868	-	87	89.333	Saimiri_boliviensis_boliviensis
ENSUMAG00000006177	-	84	73.239	ENSSBOG00000027638	-	82	73.239	Saimiri_boliviensis_boliviensis
ENSUMAG00000006177	-	88	89.333	ENSSBOG00000036179	-	87	89.333	Saimiri_boliviensis_boliviensis
ENSUMAG00000006177	-	88	74.667	ENSSBOG00000032297	-	86	74.667	Saimiri_boliviensis_boliviensis
ENSUMAG00000006177	-	87	89.189	ENSSHAG00000012294	SNRPF	67	89.189	Sarcophilus_harrisii
ENSUMAG00000006177	-	75	85.938	ENSSFOG00015021523	snrpf	96	85.938	Scleropages_formosus
ENSUMAG00000006177	-	88	84.000	ENSSMAG00000005533	snrpf	86	84.000	Scophthalmus_maximus
ENSUMAG00000006177	-	78	86.364	ENSSDUG00000016283	snrpf	79	86.364	Seriola_dumerili
ENSUMAG00000006177	-	93	68.354	ENSSLDG00000003885	-	87	73.239	Seriola_lalandi_dorsalis
ENSUMAG00000006177	-	88	85.333	ENSSLDG00000005119	snrpf	87	85.333	Seriola_lalandi_dorsalis
ENSUMAG00000006177	-	86	89.041	ENSSPUG00000014590	-	86	89.041	Sphenodon_punctatus
ENSUMAG00000006177	-	87	86.486	ENSSPAG00000003283	snrpf	84	86.486	Stegastes_partitus
ENSUMAG00000006177	-	88	89.333	ENSSSCG00000000895	SNRPF	87	89.333	Sus_scrofa
ENSUMAG00000006177	-	68	84.483	ENSTRUG00000014956	snrpf	84	84.483	Takifugu_rubripes
ENSUMAG00000006177	-	88	86.667	ENSTNIG00000012672	snrpf	87	86.667	Tetraodon_nigroviridis
ENSUMAG00000006177	-	88	64.000	ENSTTRG00000006070	SNRPF	87	64.000	Tursiops_truncatus
ENSUMAG00000006177	-	88	89.333	ENSUAMG00000008176	-	87	89.333	Ursus_americanus
ENSUMAG00000006177	-	100	98.824	ENSUAMG00000001101	-	100	98.824	Ursus_americanus
ENSUMAG00000006177	-	88	89.333	ENSVPAG00000008712	-	87	89.333	Vicugna_pacos
ENSUMAG00000006177	-	92	80.769	ENSVVUG00000023821	-	96	81.333	Vulpes_vulpes
ENSUMAG00000006177	-	87	65.789	ENSXETG00000021630	snrpf	87	65.789	Xenopus_tropicalis
ENSUMAG00000006177	-	88	85.526	ENSXCOG00000013860	snrpf	87	85.526	Xiphophorus_couchianus
ENSUMAG00000006177	-	86	86.301	ENSXMAG00000015448	snrpf	86	86.301	Xiphophorus_maculatus